RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TMEM131LA2VDJ0 1609 aa25.32■■□□□ 1.64
CCDC28B-204ENST00000469003 NUP155O75694 1391 aa25.31■■□□□ 1.64
CCDC28B-204ENST00000469003 ZFYVE9O95405 1425 aa25.3■■□□□ 1.64
CCDC28B-204ENST00000469003 SENP3Q9H4L4 574 aaPredicted RBP25.3■■□□□ 1.64
CCDC28B-204ENST00000469003 SLC26A8Q96RN1 970 aa25.29■■□□□ 1.64
CCDC28B-204ENST00000469003 KCNA6P17658 529 aa25.28■■□□□ 1.64
CCDC28B-204ENST00000469003 RRBP1Q9P2E9 1410 aaKnown RBP25.28■■□□□ 1.64
CCDC28B-204ENST00000469003 RIMS2Q9UQ26 1411 aa25.28■■□□□ 1.64
CCDC28B-204ENST00000469003 HDGFP51858 240 aaKnown RBP25.26■■□□□ 1.63
CCDC28B-204ENST00000469003 PLEKHG1Q9ULL1 1385 aa25.26■■□□□ 1.63
CCDC28B-204ENST00000469003 NWD1Q149M9 1564 aa25.25■■□□□ 1.63
CCDC28B-204ENST00000469003 BCANQ96GW7 911 aa25.24■■□□□ 1.63
CCDC28B-204ENST00000469003 CHGAP10645 457 aaKnown RBP25.23■■□□□ 1.63
CCDC28B-204ENST00000469003 NKTRP30414 1462 aaKnown RBP25.22■■□□□ 1.63
CCDC28B-204ENST00000469003 TMEM94Q12767 1356 aa25.22■■□□□ 1.63
CCDC28B-204ENST00000469003 PPP1R15AO75807 674 aaPredicted RBP25.22■■□□□ 1.63
CCDC28B-204ENST00000469003 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.21■■□□□ 1.63
CCDC28B-204ENST00000469003 PROSER2Q86WR7 435 aaPredicted RBP25.2■■□□□ 1.62
CCDC28B-204ENST00000469003 CHD2O14647 1828 aaKnown RBP25.18■■□□□ 1.62
CCDC28B-204ENST00000469003 SPHKAPQ2M3C7 1700 aa25.17■■□□□ 1.62
CCDC28B-204ENST00000469003 TBX22Q9Y458 520 aa25.15■■□□□ 1.62
CCDC28B-204ENST00000469003 NAIPQ13075 1403 aa25.14■■□□□ 1.62
CCDC28B-204ENST00000469003 DIP2AQ14689 1571 aa25.13■■□□□ 1.61
CCDC28B-204ENST00000469003 FAM135BQ49AJ0 1406 aa25.12■■□□□ 1.61
CCDC28B-204ENST00000469003 RBM33Q96EV2 1170 aaKnown RBP25.12■■□□□ 1.61
CCDC28B-204ENST00000469003 ADAMTS13Q76LX8 1427 aa25.12■■□□□ 1.61
CCDC28B-204ENST00000469003 NUTM2DQ5VT03 806 aaPredicted RBP25.11■■□□□ 1.61
CCDC28B-204ENST00000469003 MSH6P52701 1360 aa25.08■■□□□ 1.61
CCDC28B-204ENST00000469003 PIK3R4Q99570 1358 aa25.07■■□□□ 1.6
CCDC28B-204ENST00000469003 HFM1A2PYH4 1435 aa25.06■■□□□ 1.6
CCDC28B-204ENST00000469003 ROBO1Q9Y6N7 1651 aa25.06■■□□□ 1.6
CCDC28B-204ENST00000469003 RGS17Q9UGC6 210 aaPredicted RBP25.05■■□□□ 1.6
CCDC28B-204ENST00000469003 TRPM2O94759 1503 aa25.05■■□□□ 1.6
CCDC28B-204ENST00000469003 NCOA3Q9Y6Q9 1424 aa25.04■■□□□ 1.6
CCDC28B-204ENST00000469003 CLTCL1P53675 1640 aa25.04■■□□□ 1.6
CCDC28B-204ENST00000469003 SETBP1Q9Y6X0 1596 aa25.01■■□□□ 1.59
CCDC28B-204ENST00000469003 NRXN3Q9Y4C0 1643 aa25.01■■□□□ 1.59
CCDC28B-204ENST00000469003 ZNF326Q5BKZ1 582 aaKnown RBP25■■□□□ 1.59
CCDC28B-204ENST00000469003 KIF1BO60333 1816 aa24.99■■□□□ 1.59
CCDC28B-204ENST00000469003 SLAIN2Q9P270 581 aa24.99■■□□□ 1.59
CCDC28B-204ENST00000469003 TRIM52Q96A61 297 aa24.98■■□□□ 1.59
CCDC28B-204ENST00000469003 PTPRUQ92729 1446 aa24.97■■□□□ 1.59
CCDC28B-204ENST00000469003 NEXMIFQ5QGS0 1516 aa24.96■■□□□ 1.59
CCDC28B-204ENST00000469003 AMOTL2Q9Y2J4 779 aa24.96■■□□□ 1.59
CCDC28B-204ENST00000469003 C14orf37Q86TY3 774 aa24.95■■□□□ 1.58
CCDC28B-204ENST00000469003 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.95■■□□□ 1.58
CCDC28B-204ENST00000469003 XRN1Q8IZH2 1706 aaKnown RBP24.94■■□□□ 1.58
CCDC28B-204ENST00000469003 C19orf44Q9H6X5 657 aa24.93■■□□□ 1.58
CCDC28B-204ENST00000469003 SLC4A1APQ9BWU0 796 aaKnown RBP24.92■■□□□ 1.58
CCDC28B-204ENST00000469003 PHLPP1O60346 1717 aa24.92■■□□□ 1.58
CCDC28B-204ENST00000469003 CADPS2Q86UW7 1296 aa24.91■■□□□ 1.58
CCDC28B-204ENST00000469003 POTEAQ6S8J7 498 aa24.9■■□□□ 1.58
CCDC28B-204ENST00000469003 METP08581 1390 aa24.89■■□□□ 1.57
CCDC28B-204ENST00000469003 ATF3P18847 181 aa24.88■■□□□ 1.57
CCDC28B-204ENST00000469003 DCCP43146 1447 aa24.86■■□□□ 1.57
CCDC28B-204ENST00000469003 COL16A1Q07092 1604 aaPredicted RBP24.84■■□□□ 1.57
CCDC28B-204ENST00000469003 VGFO15240 615 aaPredicted RBP24.83■■□□□ 1.57
CCDC28B-204ENST00000469003 RPGRIP1LQ68CZ1 1315 aa24.83■■□□□ 1.56
CCDC28B-204ENST00000469003 JCADQ9P266 1359 aa24.82■■□□□ 1.56
CCDC28B-204ENST00000469003 AHDC1Q5TGY3 1603 aaPredicted RBP24.82■■□□□ 1.56
CCDC28B-204ENST00000469003 SETD1AO15047 1707 aaKnown RBP24.81■■□□□ 1.56
CCDC28B-204ENST00000469003 PPLO60437 1756 aa24.8■■□□□ 1.56
CCDC28B-204ENST00000469003 FOXD1Q16676 465 aa24.78■■□□□ 1.56
CCDC28B-204ENST00000469003 ADGRL3Q9HAR2 1447 aa24.77■■□□□ 1.56
CCDC28B-204ENST00000469003 BRINP3Q76B58 766 aa24.76■■□□□ 1.55
CCDC28B-204ENST00000469003 MST1RQ04912 1400 aa24.76■■□□□ 1.55
CCDC28B-204ENST00000469003 NALCNQ8IZF0 1738 aa24.75■■□□□ 1.55
CCDC28B-204ENST00000469003 MPHOSPH9Q99550 1183 aa24.75■■□□□ 1.55
CCDC28B-204ENST00000469003 CCDC144AA2RUR9 1427 aa24.75■■□□□ 1.55
CCDC28B-204ENST00000469003 PTCH1Q13635 1447 aa24.74■■□□□ 1.55
CCDC28B-204ENST00000469003 ASXL1Q8IXJ9 1541 aa24.73■■□□□ 1.55
CCDC28B-204ENST00000469003 PRAG1Q86YV5 1406 aa24.72■■□□□ 1.55
CCDC28B-204ENST00000469003 ACIN1Q9UKV3 1341 aaKnown RBP24.72■■□□□ 1.55
CCDC28B-204ENST00000469003 SHPRHQ149N8 1683 aa24.72■■□□□ 1.55
CCDC28B-204ENST00000469003 SPATA31A6Q5VVP1 1343 aa24.71■■□□□ 1.55
CCDC28B-204ENST00000469003 SPATA31E1Q6ZUB1 1445 aa24.69■■□□□ 1.54
CCDC28B-204ENST00000469003 NHSL1Q5SYE7 1610 aa24.69■■□□□ 1.54
CCDC28B-204ENST00000469003 SETD5Q9C0A6 1442 aa24.69■■□□□ 1.54
CCDC28B-204ENST00000469003 ROBO2Q9HCK4 1378 aa24.68■■□□□ 1.54
CCDC28B-204ENST00000469003 IFT172Q9UG01 1749 aa24.67■■□□□ 1.54
CCDC28B-204ENST00000469003 LRP6O75581 1613 aa24.67■■□□□ 1.54
CCDC28B-204ENST00000469003 RGL3Q3MIN7 710 aa24.65■■□□□ 1.54
CCDC28B-204ENST00000469003 ANKRD30BQ9BXX2 1392 aa24.65■■□□□ 1.54
CCDC28B-204ENST00000469003 ADGRF5Q8IZF2 1346 aa24.64■■□□□ 1.54
CCDC28B-204ENST00000469003 C1orf167Q5SNV9 1468 aa24.63■■□□□ 1.53
CCDC28B-204ENST00000469003 MEX3CQ5U5Q3 659 aaKnown RBP24.62■■□□□ 1.53
CCDC28B-204ENST00000469003 LRRC59Q96AG4 307 aaKnown RBP24.58■■□□□ 1.53
CCDC28B-204ENST00000469003 LAMC1P11047 1609 aa24.57■■□□□ 1.52
CCDC28B-204ENST00000469003 RAB3GAP2Q9H2M9 1393 aa24.57■■□□□ 1.52
CCDC28B-204ENST00000469003 ZNF772Q68DY9 489 aaPredicted RBP24.57■■□□□ 1.52
CCDC28B-204ENST00000469003 PIK3C2GO75747 1445 aa24.57■■□□□ 1.52
CCDC28B-204ENST00000469003 TECPR2O15040 1411 aa24.56■■□□□ 1.52
CCDC28B-204ENST00000469003 DDX17Q92841 729 aaKnown RBP24.56■■□□□ 1.52
CCDC28B-204ENST00000469003 UPF1Q92900 1129 aaKnown RBP eCLIP24.55■■□□□ 1.52
CCDC28B-204ENST00000469003 LRPPRCP42704 1394 aaKnown RBP24.54■■□□□ 1.52
CCDC28B-204ENST00000469003 CDC42BPGQ6DT37 1551 aa24.54■■□□□ 1.52
CCDC28B-204ENST00000469003 NUTM2BA6NNL0 878 aaPredicted RBP24.54■■□□□ 1.52
CCDC28B-204ENST00000469003 NUTM2EB1AL46 878 aaPredicted RBP24.54■■□□□ 1.52
CCDC28B-204ENST00000469003 NUTM2AQ8IVF1 878 aaPredicted RBP24.54■■□□□ 1.52
CCDC28B-204ENST00000469003 KNDC1Q76NI1 1749 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms