RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 PPARGC1BQ86YN6 1023 aaKnown RBP32.34■■■□□ 2.77
SHANK1-206ENST00000468654 ZFYVE9O95405 1425 aa32.34■■■□□ 2.77
SHANK1-206ENST00000468654 NKTRP30414 1462 aaKnown RBP32.32■■■□□ 2.76
SHANK1-206ENST00000468654 ROBO1Q9Y6N7 1651 aa32.31■■■□□ 2.76
SHANK1-206ENST00000468654 SPHKAPQ2M3C7 1700 aa32.26■■■□□ 2.76
SHANK1-206ENST00000468654 ITGAEP38570 1179 aa32.26■■■□□ 2.75
SHANK1-206ENST00000468654 TMEM94Q12767 1356 aa32.25■■■□□ 2.75
SHANK1-206ENST00000468654 SENP3Q9H4L4 574 aaPredicted RBP32.24■■■□□ 2.75
SHANK1-206ENST00000468654 RRBP1Q9P2E9 1410 aaKnown RBP32.23■■■□□ 2.75
SHANK1-206ENST00000468654 RIMS2Q9UQ26 1411 aa32.23■■■□□ 2.75
SHANK1-206ENST00000468654 SLC26A8Q96RN1 970 aa32.22■■■□□ 2.75
SHANK1-206ENST00000468654 PLEKHG1Q9ULL1 1385 aa32.2■■■□□ 2.75
SHANK1-206ENST00000468654 NUP155O75694 1391 aa32.19■■■□□ 2.74
SHANK1-206ENST00000468654 DIP2AQ14689 1571 aa32.19■■■□□ 2.74
SHANK1-206ENST00000468654 KCNA6P17658 529 aa32.19■■■□□ 2.74
SHANK1-206ENST00000468654 FAM135BQ49AJ0 1406 aa32.15■■■□□ 2.74
SHANK1-206ENST00000468654 PHLPP1O60346 1717 aa32.14■■■□□ 2.74
SHANK1-206ENST00000468654 NRXN3Q9Y4C0 1643 aa32.11■■■□□ 2.73
SHANK1-206ENST00000468654 RBM33Q96EV2 1170 aaKnown RBP32.1■■■□□ 2.73
SHANK1-206ENST00000468654 ADAMTS13Q76LX8 1427 aa32.09■■■□□ 2.73
SHANK1-206ENST00000468654 PHF23Q9BUL5 403 aaPredicted RBP32.08■■■□□ 2.73
SHANK1-206ENST00000468654 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.08■■■□□ 2.73
SHANK1-206ENST00000468654 PROSER2Q86WR7 435 aaPredicted RBP32.07■■■□□ 2.72
SHANK1-206ENST00000468654 PPP1R15AO75807 674 aaPredicted RBP32.06■■■□□ 2.72
SHANK1-206ENST00000468654 HDGFP51858 240 aaKnown RBP32.06■■■□□ 2.72
SHANK1-206ENST00000468654 CHGAP10645 457 aaKnown RBP32.05■■■□□ 2.72
SHANK1-206ENST00000468654 NAIPQ13075 1403 aa32.05■■■□□ 2.72
SHANK1-206ENST00000468654 XRN1Q8IZH2 1706 aaKnown RBP32.05■■■□□ 2.72
SHANK1-206ENST00000468654 TRPM2O94759 1503 aa32.05■■■□□ 2.72
SHANK1-206ENST00000468654 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.04■■■□□ 2.72
SHANK1-206ENST00000468654 BCANQ96GW7 911 aa32.04■■■□□ 2.72
SHANK1-206ENST00000468654 MSH6P52701 1360 aa32.04■■■□□ 2.72
SHANK1-206ENST00000468654 CLTCL1P53675 1640 aa32.04■■■□□ 2.72
SHANK1-206ENST00000468654 COL16A1Q07092 1604 aaPredicted RBP32.02■■■□□ 2.72
SHANK1-206ENST00000468654 KIF1BO60333 1816 aa32.02■■■□□ 2.72
SHANK1-206ENST00000468654 SETBP1Q9Y6X0 1596 aa31.99■■■□□ 2.71
SHANK1-206ENST00000468654 NUTM2DQ5VT03 806 aaPredicted RBP31.96■■■□□ 2.71
SHANK1-206ENST00000468654 TBX22Q9Y458 520 aa31.96■■■□□ 2.71
SHANK1-206ENST00000468654 HFM1A2PYH4 1435 aa31.95■■■□□ 2.71
SHANK1-206ENST00000468654 PIK3R4Q99570 1358 aa31.93■■■□□ 2.7
SHANK1-206ENST00000468654 NCOA3Q9Y6Q9 1424 aa31.92■■■□□ 2.7
SHANK1-206ENST00000468654 NEXMIFQ5QGS0 1516 aa31.92■■■□□ 2.7
SHANK1-206ENST00000468654 PTPRUQ92729 1446 aa31.92■■■□□ 2.7
SHANK1-206ENST00000468654 AHDC1Q5TGY3 1603 aaPredicted RBP31.9■■■□□ 2.7
SHANK1-206ENST00000468654 RGS17Q9UGC6 210 aaPredicted RBP31.9■■■□□ 2.7
SHANK1-206ENST00000468654 SETD1AO15047 1707 aaKnown RBP31.89■■■□□ 2.7
SHANK1-206ENST00000468654 SHPRHQ149N8 1683 aa31.89■■■□□ 2.7
SHANK1-206ENST00000468654 NALCNQ8IZF0 1738 aa31.87■■■□□ 2.69
SHANK1-206ENST00000468654 SLAIN2Q9P270 581 aa31.85■■■□□ 2.69
SHANK1-206ENST00000468654 NHSL1Q5SYE7 1610 aa31.81■■■□□ 2.68
SHANK1-206ENST00000468654 PPLO60437 1756 aa31.81■■■□□ 2.68
SHANK1-206ENST00000468654 ZNF326Q5BKZ1 582 aaKnown RBP31.78■■■□□ 2.68
SHANK1-206ENST00000468654 JCADQ9P266 1359 aa31.78■■■□□ 2.68
SHANK1-206ENST00000468654 DCCP43146 1447 aa31.77■■■□□ 2.68
SHANK1-206ENST00000468654 LRP6O75581 1613 aa31.77■■■□□ 2.68
SHANK1-206ENST00000468654 C14orf37Q86TY3 774 aa31.76■■■□□ 2.67
SHANK1-206ENST00000468654 TRIM52Q96A61 297 aa31.76■■■□□ 2.67
SHANK1-206ENST00000468654 ASXL1Q8IXJ9 1541 aa31.74■■■□□ 2.67
SHANK1-206ENST00000468654 AMOTL2Q9Y2J4 779 aa31.73■■■□□ 2.67
SHANK1-206ENST00000468654 METP08581 1390 aa31.72■■■□□ 2.67
SHANK1-206ENST00000468654 SLC4A1APQ9BWU0 796 aaKnown RBP31.71■■■□□ 2.67
SHANK1-206ENST00000468654 CADPS2Q86UW7 1296 aa31.7■■■□□ 2.67
SHANK1-206ENST00000468654 C19orf44Q9H6X5 657 aa31.7■■■□□ 2.67
SHANK1-206ENST00000468654 POTEAQ6S8J7 498 aa31.69■■■□□ 2.66
SHANK1-206ENST00000468654 MST1RQ04912 1400 aa31.67■■■□□ 2.66
SHANK1-206ENST00000468654 ADGRL3Q9HAR2 1447 aa31.66■■■□□ 2.66
SHANK1-206ENST00000468654 IFT172Q9UG01 1749 aa31.66■■■□□ 2.66
SHANK1-206ENST00000468654 ATF3P18847 181 aa31.66■■■□□ 2.66
SHANK1-206ENST00000468654 BRINP3Q76B58 766 aa31.61■■■□□ 2.65
SHANK1-206ENST00000468654 LAMC1P11047 1609 aa31.6■■■□□ 2.65
SHANK1-206ENST00000468654 PTCH1Q13635 1447 aa31.59■■■□□ 2.65
SHANK1-206ENST00000468654 SPATA31A6Q5VVP1 1343 aa31.58■■■□□ 2.65
SHANK1-206ENST00000468654 RPGRIP1LQ68CZ1 1315 aa31.57■■■□□ 2.64
SHANK1-206ENST00000468654 PRAG1Q86YV5 1406 aa31.57■■■□□ 2.64
SHANK1-206ENST00000468654 VGFO15240 615 aaPredicted RBP31.56■■■□□ 2.64
SHANK1-206ENST00000468654 FOXD1Q16676 465 aa31.54■■■□□ 2.64
SHANK1-206ENST00000468654 SETD5Q9C0A6 1442 aa31.53■■■□□ 2.64
SHANK1-206ENST00000468654 CCDC144AA2RUR9 1427 aa31.51■■■□□ 2.64
SHANK1-206ENST00000468654 KNDC1Q76NI1 1749 aa31.49■■■□□ 2.63
SHANK1-206ENST00000468654 MPHOSPH9Q99550 1183 aa31.48■■■□□ 2.63
SHANK1-206ENST00000468654 ROBO2Q9HCK4 1378 aa31.47■■■□□ 2.63
SHANK1-206ENST00000468654 SPATA31E1Q6ZUB1 1445 aa31.47■■■□□ 2.63
SHANK1-206ENST00000468654 CDC42BPGQ6DT37 1551 aa31.46■■■□□ 2.63
SHANK1-206ENST00000468654 C1orf167Q5SNV9 1468 aa31.46■■■□□ 2.63
SHANK1-206ENST00000468654 MEX3CQ5U5Q3 659 aaKnown RBP31.44■■■□□ 2.62
SHANK1-206ENST00000468654 ACIN1Q9UKV3 1341 aaKnown RBP31.43■■■□□ 2.62
SHANK1-206ENST00000468654 PNPLA6Q8IY17 1366 aa31.4■■■□□ 2.62
SHANK1-206ENST00000468654 COL22A1Q8NFW1 1626 aaPredicted RBP31.38■■■□□ 2.61
SHANK1-206ENST00000468654 DDX17Q92841 729 aaKnown RBP31.38■■■□□ 2.61
SHANK1-206ENST00000468654 ANKRD30BQ9BXX2 1392 aa31.37■■■□□ 2.61
SHANK1-206ENST00000468654 MARF1Q9Y4F3 1742 aaKnown RBP31.36■■■□□ 2.61
SHANK1-206ENST00000468654 ADGRF5Q8IZF2 1346 aa31.36■■■□□ 2.61
SHANK1-206ENST00000468654 ZNF772Q68DY9 489 aaPredicted RBP31.35■■■□□ 2.61
SHANK1-206ENST00000468654 NUTM2BA6NNL0 878 aaPredicted RBP31.34■■■□□ 2.61
SHANK1-206ENST00000468654 NUTM2EB1AL46 878 aaPredicted RBP31.34■■■□□ 2.61
SHANK1-206ENST00000468654 RGL3Q3MIN7 710 aa31.34■■■□□ 2.61
SHANK1-206ENST00000468654 NUTM2AQ8IVF1 878 aaPredicted RBP31.34■■■□□ 2.61
SHANK1-206ENST00000468654 FMN2Q9NZ56 1722 aa31.33■■■□□ 2.61
SHANK1-206ENST00000468654 RAB3GAP2Q9H2M9 1393 aa31.32■■■□□ 2.6
SHANK1-206ENST00000468654 TECPR2O15040 1411 aa31.31■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms