RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 PTPRMP28827 1452 aa15.37■□□□□ 0.05
MSX1-202ENST00000468421 ZNF142P52746 1687 aaPredicted RBP15.37■□□□□ 0.05
MSX1-202ENST00000468421 NRXN1Q9ULB1 1477 aa15.36■□□□□ 0.05
MSX1-202ENST00000468421 KIAA1210Q9ULL0 1709 aa15.36■□□□□ 0.05
MSX1-202ENST00000468421 CEP170BQ9Y4F5 1589 aaPredicted RBP15.34■□□□□ 0.05
MSX1-202ENST00000468421 LAMC1P11047 1609 aa15.33■□□□□ 0.04
MSX1-202ENST00000468421 KDM4FA0A1W2PPD8 638 aa15.33■□□□□ 0.04
MSX1-202ENST00000468421 RPGRIP1LQ68CZ1 1315 aa15.33■□□□□ 0.04
MSX1-202ENST00000468421 ADGRF5Q8IZF2 1346 aa15.33■□□□□ 0.04
MSX1-202ENST00000468421 SETD1BQ9UPS6 1966 aaKnown RBP15.32■□□□□ 0.04
MSX1-202ENST00000468421 ZFYVE9O95405 1425 aa15.32■□□□□ 0.04
MSX1-202ENST00000468421 STAC3Q96MF2 364 aa15.31■□□□□ 0.04
MSX1-202ENST00000468421 STAG3Q9UJ98 1225 aa15.31■□□□□ 0.04
MSX1-202ENST00000468421 PIK3C2GO75747 1445 aa15.31■□□□□ 0.04
MSX1-202ENST00000468421 RIMS2Q9UQ26 1411 aa15.31■□□□□ 0.04
MSX1-202ENST00000468421 NUTM2DQ5VT03 806 aaPredicted RBP15.3■□□□□ 0.04
MSX1-202ENST00000468421 IQGAP1P46940 1657 aa15.29■□□□□ 0.04
MSX1-202ENST00000468421 SETD1AO15047 1707 aaKnown RBP15.29■□□□□ 0.04
MSX1-202ENST00000468421 GPRASP1Q5JY77 1395 aa15.28■□□□□ 0.04
MSX1-202ENST00000468421 NBPF1Q3BBV0 1214 aa15.28■□□□□ 0.04
MSX1-202ENST00000468421 NRXN3Q9Y4C0 1643 aa15.28■□□□□ 0.04
MSX1-202ENST00000468421 SLIT1O75093 1534 aa15.27■□□□□ 0.04
MSX1-202ENST00000468421 ARHGAP23Q9P227 1491 aa15.27■□□□□ 0.04
MSX1-202ENST00000468421 ROCK2O75116 1388 aaKnown RBP15.27■□□□□ 0.04
MSX1-202ENST00000468421 TMEM2Q9UHN6 1383 aa15.26■□□□□ 0.03
MSX1-202ENST00000468421 SETBP1Q9Y6X0 1596 aa15.26■□□□□ 0.03
MSX1-202ENST00000468421 ZNF316A6NFI3 1004 aaPredicted RBP15.25■□□□□ 0.03
MSX1-202ENST00000468421 VGFO15240 615 aaPredicted RBP15.25■□□□□ 0.03
MSX1-202ENST00000468421 ASXL1Q8IXJ9 1541 aa15.25■□□□□ 0.03
MSX1-202ENST00000468421 ADGRB1O14514 1584 aa15.24■□□□□ 0.03
MSX1-202ENST00000468421 HSPA5P11021 654 aaKnown RBP15.24■□□□□ 0.03
MSX1-202ENST00000468421 CFAP70Q5T0N1 1121 aa15.24■□□□□ 0.03
MSX1-202ENST00000468421 HIRIP3Q9BW71 556 aaPredicted RBP15.24■□□□□ 0.03
MSX1-202ENST00000468421 ALKQ9UM73 1620 aa15.24■□□□□ 0.03
MSX1-202ENST00000468421 USP47Q96K76 1375 aa15.24■□□□□ 0.03
MSX1-202ENST00000468421 CARD11Q9BXL7 1154 aa15.23■□□□□ 0.03
MSX1-202ENST00000468421 POLR1AO95602 1720 aaPredicted RBP15.23■□□□□ 0.03
MSX1-202ENST00000468421 EIF4G2P78344 907 aaKnown RBP eCLIP15.22■□□□□ 0.03
MSX1-202ENST00000468421 ILDR1Q86SU0 546 aaPredicted RBP15.22■□□□□ 0.03
MSX1-202ENST00000468421 SENP3Q9H4L4 574 aaPredicted RBP15.21■□□□□ 0.03
MSX1-202ENST00000468421 C14orf93Q9H972 538 aaKnown RBP15.21■□□□□ 0.03
MSX1-202ENST00000468421 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.2■□□□□ 0.02
MSX1-202ENST00000468421 ARHGEF28Q8N1W1 1705 aaKnown RBP15.2■□□□□ 0.02
MSX1-202ENST00000468421 LTKP29376 864 aa15.19■□□□□ 0.02
MSX1-202ENST00000468421 THEMISQ8N1K5 641 aaPredicted RBP15.19■□□□□ 0.02
MSX1-202ENST00000468421 SCAF11Q99590 1463 aaKnown RBP15.19■□□□□ 0.02
MSX1-202ENST00000468421 PLEKHG1Q9ULL1 1385 aa15.17■□□□□ 0.02
MSX1-202ENST00000468421 TMEM132EQ6IEE7 984 aa15.16■□□□□ 0.02
MSX1-202ENST00000468421 TXNDC2Q86VQ3 553 aa15.16■□□□□ 0.02
MSX1-202ENST00000468421 ADAMTS13Q76LX8 1427 aa15.16■□□□□ 0.02
MSX1-202ENST00000468421 HDGFP51858 240 aaKnown RBP15.15■□□□□ 0.02
MSX1-202ENST00000468421 QRICH2Q9H0J4 1663 aa15.15■□□□□ 0.02
MSX1-202ENST00000468421 KNDC1Q76NI1 1749 aa15.14■□□□□ 0.01
MSX1-202ENST00000468421 MED14O60244 1454 aa15.14■□□□□ 0.01
MSX1-202ENST00000468421 DIP2AQ14689 1571 aa15.14■□□□□ 0.01
MSX1-202ENST00000468421 ST20-MTHFSA0A0A6YYL1 179 aa15.13■□□□□ 0.01
MSX1-202ENST00000468421 EID1Q9Y6B2 187 aa15.13■□□□□ 0.01
MSX1-202ENST00000468421 YTHDC2Q9H6S0 1430 aaKnown RBP15.12■□□□□ 0.01
MSX1-202ENST00000468421 LMTK3Q96Q04 1460 aa15.12■□□□□ 0.01
MSX1-202ENST00000468421 METP08581 1390 aa15.11■□□□□ 0.01
MSX1-202ENST00000468421 C11orf95C9JLR9 678 aaPredicted RBP15.1■□□□□ 0.01
MSX1-202ENST00000468421 EIF3AQ14152 1382 aaKnown RBP15.1■□□□□ 0.01
MSX1-202ENST00000468421 TRAK1Q9UPV9 953 aa15.09■□□□□ 0.01
MSX1-202ENST00000468421 CPS1P31327 1500 aa15.08■□□□□ 0.01
MSX1-202ENST00000468421 DLC1Q96QB1 1528 aa15.08■□□□□ 0.01
MSX1-202ENST00000468421 ANKLE2Q86XL3 938 aa15.08■□□□□ 0
MSX1-202ENST00000468421 BCANQ96GW7 911 aa15.08■□□□□ 0
MSX1-202ENST00000468421 TESK2Q96S53 571 aa15.08■□□□□ 0
MSX1-202ENST00000468421 WASHC2AQ641Q2 1341 aa15.08■□□□□ 0
MSX1-202ENST00000468421 XRN1Q8IZH2 1706 aaKnown RBP15.08■□□□□ 0
MSX1-202ENST00000468421 LRPPRCP42704 1394 aaKnown RBP15.08■□□□□ 0
MSX1-202ENST00000468421 STRCQ7RTU9 1775 aa15.07■□□□□ 0
MSX1-202ENST00000468421 SLC26A8Q96RN1 970 aa15.07■□□□□ 0
MSX1-202ENST00000468421 CCDC7Q96M83 1385 aa15.07■□□□□ 0
MSX1-202ENST00000468421 NPHP4O75161 1426 aaPredicted RBP15.07■□□□□ 0
MSX1-202ENST00000468421 PTPRUQ92729 1446 aa15.07■□□□□ 0
MSX1-202ENST00000468421 CHD2O14647 1828 aaKnown RBP15.06■□□□□ 0
MSX1-202ENST00000468421 STK26Q9P289 416 aa15.06■□□□□ 0
MSX1-202ENST00000468421 KIF7Q2M1P5 1343 aa15.06■□□□□ 0
MSX1-202ENST00000468421 DISP3Q9P2K9 1392 aa15.06■□□□□ 0
MSX1-202ENST00000468421 HSPA2P54652 639 aa15.05■□□□□ -0
MSX1-202ENST00000468421 NCKAP5LQ9HCH0 1330 aa15.05■□□□□ -0
MSX1-202ENST00000468421 TECPR2O15040 1411 aa15.05■□□□□ -0
MSX1-202ENST00000468421 ABCC11Q96J66 1382 aa15.04■□□□□ -0
MSX1-202ENST00000468421 CENPJQ9HC77 1338 aaPredicted RBP15.04■□□□□ -0
MSX1-202ENST00000468421 TBX22Q9Y458 520 aa15.04■□□□□ -0
MSX1-202ENST00000468421 SBNO2Q9Y2G9 1366 aa15.03■□□□□ -0
MSX1-202ENST00000468421 MYOM1P52179 1685 aa15.03■□□□□ -0
MSX1-202ENST00000468421 TULP4Q9NRJ4 1543 aa15.02■□□□□ -0
MSX1-202ENST00000468421 PLEKHH1Q9ULM0 1364 aa15.01□□□□□ -0.01
MSX1-202ENST00000468421 NWD1Q149M9 1564 aa15□□□□□ -0.01
MSX1-202ENST00000468421 DDX10Q13206 875 aaKnown RBP15□□□□□ -0.01
MSX1-202ENST00000468421 PRAM1Q96QH2 718 aa15□□□□□ -0.01
MSX1-202ENST00000468421 SIPA1L2Q9P2F8 1722 aaPredicted RBP15□□□□□ -0.01
MSX1-202ENST00000468421 PIK3R4Q99570 1358 aa14.99□□□□□ -0.01
MSX1-202ENST00000468421 ROBO2Q9HCK4 1378 aa14.99□□□□□ -0.01
MSX1-202ENST00000468421 TMF1P82094 1093 aa14.99□□□□□ -0.01
MSX1-202ENST00000468421 SAFB2Q14151 953 aaKnown RBP eCLIP14.99□□□□□ -0.01
MSX1-202ENST00000468421 DIEXFQ68CQ4 756 aaKnown RBP14.99□□□□□ -0.01
MSX1-202ENST00000468421 FAM135BQ49AJ0 1406 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms