RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 RBM33Q96EV2 1170 aaKnown RBP31.92■■■□□ 2.7
COL6A1-203ENST00000466285 TMEM94Q12767 1356 aa31.92■■■□□ 2.7
COL6A1-203ENST00000466285 PPARGC1BQ86YN6 1023 aaKnown RBP31.9■■■□□ 2.7
COL6A1-203ENST00000466285 CHD2O14647 1828 aaKnown RBP31.86■■■□□ 2.69
COL6A1-203ENST00000466285 ROBO1Q9Y6N7 1651 aa31.86■■■□□ 2.69
COL6A1-203ENST00000466285 ROCK1Q13464 1354 aa31.86■■■□□ 2.69
COL6A1-203ENST00000466285 RIMS2Q9UQ26 1411 aa31.85■■■□□ 2.69
COL6A1-203ENST00000466285 SLC52A1Q9NWF4 448 aa31.85■■■□□ 2.69
COL6A1-203ENST00000466285 NKTRP30414 1462 aaKnown RBP31.84■■■□□ 2.69
COL6A1-203ENST00000466285 KCNA6P17658 529 aa31.82■■■□□ 2.68
COL6A1-203ENST00000466285 ITGAEP38570 1179 aa31.8■■■□□ 2.68
COL6A1-203ENST00000466285 PLEKHG1Q9ULL1 1385 aa31.8■■■□□ 2.68
COL6A1-203ENST00000466285 SPHKAPQ2M3C7 1700 aa31.75■■■□□ 2.67
COL6A1-203ENST00000466285 FAM135BQ49AJ0 1406 aa31.75■■■□□ 2.67
COL6A1-203ENST00000466285 ADAMTS13Q76LX8 1427 aa31.75■■■□□ 2.67
COL6A1-203ENST00000466285 NUTM2DQ5VT03 806 aaPredicted RBP31.74■■■□□ 2.67
COL6A1-203ENST00000466285 PROSER2Q86WR7 435 aaPredicted RBP31.74■■■□□ 2.67
COL6A1-203ENST00000466285 BCANQ96GW7 911 aa31.72■■■□□ 2.67
COL6A1-203ENST00000466285 NUP155O75694 1391 aa31.71■■■□□ 2.67
COL6A1-203ENST00000466285 CHGAP10645 457 aaKnown RBP31.7■■■□□ 2.67
COL6A1-203ENST00000466285 NRXN3Q9Y4C0 1643 aa31.7■■■□□ 2.66
COL6A1-203ENST00000466285 PHF23Q9BUL5 403 aaPredicted RBP31.69■■■□□ 2.66
COL6A1-203ENST00000466285 PPP1R15AO75807 674 aaPredicted RBP31.68■■■□□ 2.66
COL6A1-203ENST00000466285 DIP2AQ14689 1571 aa31.66■■■□□ 2.66
COL6A1-203ENST00000466285 RGS17Q9UGC6 210 aaPredicted RBP31.65■■■□□ 2.66
COL6A1-203ENST00000466285 PHLPP1O60346 1717 aa31.65■■■□□ 2.66
COL6A1-203ENST00000466285 MSH6P52701 1360 aa31.62■■■□□ 2.65
COL6A1-203ENST00000466285 CLTCL1P53675 1640 aa31.62■■■□□ 2.65
COL6A1-203ENST00000466285 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.61■■■□□ 2.65
COL6A1-203ENST00000466285 PTPRUQ92729 1446 aa31.61■■■□□ 2.65
COL6A1-203ENST00000466285 COL16A1Q07092 1604 aaPredicted RBP31.6■■■□□ 2.65
COL6A1-203ENST00000466285 RRBP1Q9P2E9 1410 aaKnown RBP31.58■■■□□ 2.65
COL6A1-203ENST00000466285 XRN1Q8IZH2 1706 aaKnown RBP31.58■■■□□ 2.65
COL6A1-203ENST00000466285 TBX22Q9Y458 520 aa31.57■■■□□ 2.64
COL6A1-203ENST00000466285 TRPM2O94759 1503 aa31.57■■■□□ 2.64
COL6A1-203ENST00000466285 SETBP1Q9Y6X0 1596 aa31.55■■■□□ 2.64
COL6A1-203ENST00000466285 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.53■■■□□ 2.64
COL6A1-203ENST00000466285 NAIPQ13075 1403 aa31.52■■■□□ 2.64
COL6A1-203ENST00000466285 NEXMIFQ5QGS0 1516 aa31.51■■■□□ 2.63
COL6A1-203ENST00000466285 SLAIN2Q9P270 581 aa31.51■■■□□ 2.63
COL6A1-203ENST00000466285 HDGFP51858 240 aaKnown RBP31.48■■■□□ 2.63
COL6A1-203ENST00000466285 PIK3R4Q99570 1358 aa31.46■■■□□ 2.63
COL6A1-203ENST00000466285 NCOA3Q9Y6Q9 1424 aa31.45■■■□□ 2.63
COL6A1-203ENST00000466285 KIF1BO60333 1816 aa31.45■■■□□ 2.62
COL6A1-203ENST00000466285 SETD1AO15047 1707 aaKnown RBP31.44■■■□□ 2.62
COL6A1-203ENST00000466285 LRP6O75581 1613 aa31.44■■■□□ 2.62
COL6A1-203ENST00000466285 AHDC1Q5TGY3 1603 aaPredicted RBP31.44■■■□□ 2.62
COL6A1-203ENST00000466285 POTEAQ6S8J7 498 aa31.43■■■□□ 2.62
COL6A1-203ENST00000466285 METP08581 1390 aa31.43■■■□□ 2.62
COL6A1-203ENST00000466285 NALCNQ8IZF0 1738 aa31.42■■■□□ 2.62
COL6A1-203ENST00000466285 AMOTL2Q9Y2J4 779 aa31.42■■■□□ 2.62
COL6A1-203ENST00000466285 C14orf37Q86TY3 774 aa31.41■■■□□ 2.62
COL6A1-203ENST00000466285 JCADQ9P266 1359 aa31.38■■■□□ 2.61
COL6A1-203ENST00000466285 SHPRHQ149N8 1683 aa31.38■■■□□ 2.61
COL6A1-203ENST00000466285 ZNF326Q5BKZ1 582 aaKnown RBP31.36■■■□□ 2.61
COL6A1-203ENST00000466285 HFM1A2PYH4 1435 aa31.34■■■□□ 2.61
COL6A1-203ENST00000466285 ASXL1Q8IXJ9 1541 aa31.34■■■□□ 2.61
COL6A1-203ENST00000466285 C19orf44Q9H6X5 657 aa31.33■■■□□ 2.61
COL6A1-203ENST00000466285 NHSL1Q5SYE7 1610 aa31.33■■■□□ 2.61
COL6A1-203ENST00000466285 MST1RQ04912 1400 aa31.32■■■□□ 2.6
COL6A1-203ENST00000466285 CADPS2Q86UW7 1296 aa31.3■■■□□ 2.6
COL6A1-203ENST00000466285 DCCP43146 1447 aa31.3■■■□□ 2.6
COL6A1-203ENST00000466285 PPLO60437 1756 aa31.3■■■□□ 2.6
COL6A1-203ENST00000466285 ATF3P18847 181 aa31.29■■■□□ 2.6
COL6A1-203ENST00000466285 BRINP3Q76B58 766 aa31.29■■■□□ 2.6
COL6A1-203ENST00000466285 ADGRL3Q9HAR2 1447 aa31.25■■■□□ 2.59
COL6A1-203ENST00000466285 TRIM52Q96A61 297 aa31.21■■■□□ 2.59
COL6A1-203ENST00000466285 FOXD1Q16676 465 aa31.18■■■□□ 2.58
COL6A1-203ENST00000466285 DDX17Q92841 729 aaKnown RBP31.18■■■□□ 2.58
COL6A1-203ENST00000466285 ROBO2Q9HCK4 1378 aa31.17■■■□□ 2.58
COL6A1-203ENST00000466285 SPATA31A6Q5VVP1 1343 aa31.17■■■□□ 2.58
COL6A1-203ENST00000466285 PTCH1Q13635 1447 aa31.15■■■□□ 2.58
COL6A1-203ENST00000466285 IFT172Q9UG01 1749 aa31.15■■■□□ 2.58
COL6A1-203ENST00000466285 SLC4A1APQ9BWU0 796 aaKnown RBP31.14■■■□□ 2.58
COL6A1-203ENST00000466285 SETD5Q9C0A6 1442 aa31.13■■■□□ 2.57
COL6A1-203ENST00000466285 LAMC1P11047 1609 aa31.1■■■□□ 2.57
COL6A1-203ENST00000466285 PRAG1Q86YV5 1406 aa31.1■■■□□ 2.57
COL6A1-203ENST00000466285 C1orf167Q5SNV9 1468 aa31.09■■■□□ 2.57
COL6A1-203ENST00000466285 NUTM2BA6NNL0 878 aaPredicted RBP31.07■■■□□ 2.56
COL6A1-203ENST00000466285 NUTM2EB1AL46 878 aaPredicted RBP31.07■■■□□ 2.56
COL6A1-203ENST00000466285 MEX3CQ5U5Q3 659 aaKnown RBP31.07■■■□□ 2.56
COL6A1-203ENST00000466285 NUTM2AQ8IVF1 878 aaPredicted RBP31.07■■■□□ 2.56
COL6A1-203ENST00000466285 PNPLA6Q8IY17 1366 aa31.05■■■□□ 2.56
COL6A1-203ENST00000466285 SPATA31E1Q6ZUB1 1445 aa31.04■■■□□ 2.56
COL6A1-203ENST00000466285 VGFO15240 615 aaPredicted RBP31.01■■■□□ 2.55
COL6A1-203ENST00000466285 ADGRF5Q8IZF2 1346 aa31■■■□□ 2.55
COL6A1-203ENST00000466285 RPGRIP1LQ68CZ1 1315 aa30.99■■■□□ 2.55
COL6A1-203ENST00000466285 CDC42BPGQ6DT37 1551 aa30.99■■■□□ 2.55
COL6A1-203ENST00000466285 ORAI2Q96SN7 254 aa30.98■■■□□ 2.55
COL6A1-203ENST00000466285 CCDC144AA2RUR9 1427 aa30.98■■■□□ 2.55
COL6A1-203ENST00000466285 KNDC1Q76NI1 1749 aa30.97■■■□□ 2.55
COL6A1-203ENST00000466285 AFF2P51816 1311 aa30.96■■■□□ 2.55
COL6A1-203ENST00000466285 ZNF772Q68DY9 489 aaPredicted RBP30.94■■■□□ 2.54
COL6A1-203ENST00000466285 RGL3Q3MIN7 710 aa30.91■■■□□ 2.54
COL6A1-203ENST00000466285 LRRC59Q96AG4 307 aaKnown RBP30.91■■■□□ 2.54
COL6A1-203ENST00000466285 MPHOSPH9Q99550 1183 aa30.91■■■□□ 2.54
COL6A1-203ENST00000466285 COL22A1Q8NFW1 1626 aaPredicted RBP30.9■■■□□ 2.54
COL6A1-203ENST00000466285 PLEKHH1Q9ULM0 1364 aa30.9■■■□□ 2.54
COL6A1-203ENST00000466285 TECPR2O15040 1411 aa30.9■■■□□ 2.54
COL6A1-203ENST00000466285 PIK3C2GO75747 1445 aa30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms