RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 SCAF11Q99590 1463 aaKnown RBP19.48■□□□□ 0.71
COL28A1-206ENST00000465339 SPHKAPQ2M3C7 1700 aa19.48■□□□□ 0.71
COL28A1-206ENST00000465339 LTBP4Q8N2S1 1624 aa19.47■□□□□ 0.71
COL28A1-206ENST00000465339 LTKP29376 864 aa19.47■□□□□ 0.71
COL28A1-206ENST00000465339 SETD5Q9C0A6 1442 aa19.46■□□□□ 0.71
COL28A1-206ENST00000465339 FBXO41Q8TF61 875 aa19.46■□□□□ 0.71
COL28A1-206ENST00000465339 SLC4A1APQ9BWU0 796 aaKnown RBP19.46■□□□□ 0.71
COL28A1-206ENST00000465339 ZNF335Q9H4Z2 1342 aaPredicted RBP19.46■□□□□ 0.71
COL28A1-206ENST00000465339 MYO5BQ9ULV0 1848 aa19.46■□□□□ 0.71
COL28A1-206ENST00000465339 TMEM131LA2VDJ0 1609 aa19.45■□□□□ 0.7
COL28A1-206ENST00000465339 HDGFP51858 240 aaKnown RBP19.45■□□□□ 0.7
COL28A1-206ENST00000465339 ILDR1Q86SU0 546 aaPredicted RBP19.44■□□□□ 0.7
COL28A1-206ENST00000465339 CHGAP10645 457 aaKnown RBP19.43■□□□□ 0.7
COL28A1-206ENST00000465339 IQSEC2Q5JU85 1478 aa19.4■□□□□ 0.7
COL28A1-206ENST00000465339 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.39■□□□□ 0.69
COL28A1-206ENST00000465339 TRPM2O94759 1503 aa19.39■□□□□ 0.69
COL28A1-206ENST00000465339 ZFYVE9O95405 1425 aa19.38■□□□□ 0.69
COL28A1-206ENST00000465339 MPHOSPH9Q99550 1183 aa19.38■□□□□ 0.69
COL28A1-206ENST00000465339 RIMS2Q9UQ26 1411 aa19.38■□□□□ 0.69
COL28A1-206ENST00000465339 CPS1P31327 1500 aa19.37■□□□□ 0.69
COL28A1-206ENST00000465339 KIF1BO60333 1816 aa19.37■□□□□ 0.69
COL28A1-206ENST00000465339 RAB3GAP2Q9H2M9 1393 aa19.36■□□□□ 0.69
COL28A1-206ENST00000465339 PPP1R15AO75807 674 aaPredicted RBP19.35■□□□□ 0.69
COL28A1-206ENST00000465339 HRCP23327 699 aa19.35■□□□□ 0.69
COL28A1-206ENST00000465339 CLTCL1P53675 1640 aa19.35■□□□□ 0.69
COL28A1-206ENST00000465339 BCANQ96GW7 911 aa19.34■□□□□ 0.69
COL28A1-206ENST00000465339 PLEKHG1Q9ULL1 1385 aa19.33■□□□□ 0.69
COL28A1-206ENST00000465339 ZNF326Q5BKZ1 582 aaKnown RBP19.31■□□□□ 0.68
COL28A1-206ENST00000465339 SLC26A8Q96RN1 970 aa19.31■□□□□ 0.68
COL28A1-206ENST00000465339 STRCP1A6NGW2 1772 aa19.31■□□□□ 0.68
COL28A1-206ENST00000465339 NUTM2DQ5VT03 806 aaPredicted RBP19.28■□□□□ 0.68
COL28A1-206ENST00000465339 TBX22Q9Y458 520 aa19.28■□□□□ 0.68
COL28A1-206ENST00000465339 KCNA6P17658 529 aa19.27■□□□□ 0.68
COL28A1-206ENST00000465339 CCDC144AA2RUR9 1427 aa19.25■□□□□ 0.67
COL28A1-206ENST00000465339 RPGRIP1LQ68CZ1 1315 aa19.25■□□□□ 0.67
COL28A1-206ENST00000465339 LRRC7Q96NW7 1537 aa19.24■□□□□ 0.67
COL28A1-206ENST00000465339 DIP2AQ14689 1571 aa19.23■□□□□ 0.67
COL28A1-206ENST00000465339 CHD2O14647 1828 aaKnown RBP19.23■□□□□ 0.67
COL28A1-206ENST00000465339 VGFO15240 615 aaPredicted RBP19.23■□□□□ 0.67
COL28A1-206ENST00000465339 NEXMIFQ5QGS0 1516 aa19.23■□□□□ 0.67
COL28A1-206ENST00000465339 UBAP1LF5GYI3 381 aa19.22■□□□□ 0.67
COL28A1-206ENST00000465339 ADAMTS13Q76LX8 1427 aa19.22■□□□□ 0.67
COL28A1-206ENST00000465339 PIK3R4Q99570 1358 aa19.2■□□□□ 0.66
COL28A1-206ENST00000465339 TOM1O60784 492 aa19.2■□□□□ 0.66
COL28A1-206ENST00000465339 SLC4A2P04920 1241 aa19.2■□□□□ 0.66
COL28A1-206ENST00000465339 NWD1Q149M9 1564 aa19.19■□□□□ 0.66
COL28A1-206ENST00000465339 SETBP1Q9Y6X0 1596 aa19.19■□□□□ 0.66
COL28A1-206ENST00000465339 PROSER2Q86WR7 435 aaPredicted RBP19.19■□□□□ 0.66
COL28A1-206ENST00000465339 RNF39Q9H2S5 420 aa19.19■□□□□ 0.66
COL28A1-206ENST00000465339 NKTRP30414 1462 aaKnown RBP19.18■□□□□ 0.66
COL28A1-206ENST00000465339 PPLO60437 1756 aa19.18■□□□□ 0.66
COL28A1-206ENST00000465339 XIRP1Q702N8 1843 aaKnown RBP19.18■□□□□ 0.66
COL28A1-206ENST00000465339 NRXN3Q9Y4C0 1643 aa19.17■□□□□ 0.66
COL28A1-206ENST00000465339 SPATA31E1Q6ZUB1 1445 aa19.17■□□□□ 0.66
COL28A1-206ENST00000465339 RGL3Q3MIN7 710 aa19.15■□□□□ 0.66
COL28A1-206ENST00000465339 ANKRD30BQ9BXX2 1392 aa19.15■□□□□ 0.66
COL28A1-206ENST00000465339 TMEM94Q12767 1356 aa19.14■□□□□ 0.65
COL28A1-206ENST00000465339 AMOTL2Q9Y2J4 779 aa19.12■□□□□ 0.65
COL28A1-206ENST00000465339 IFT172Q9UG01 1749 aa19.11■□□□□ 0.65
COL28A1-206ENST00000465339 NCOA3Q9Y6Q9 1424 aa19.1■□□□□ 0.65
COL28A1-206ENST00000465339 TRIM26Q12899 539 aaPredicted RBP19.1■□□□□ 0.65
COL28A1-206ENST00000465339 METP08581 1390 aa19.09■□□□□ 0.65
COL28A1-206ENST00000465339 PIP4K2BP78356 416 aa19.09■□□□□ 0.65
COL28A1-206ENST00000465339 PTPRUQ92729 1446 aa19.08■□□□□ 0.65
COL28A1-206ENST00000465339 ALKQ9UM73 1620 aa19.08■□□□□ 0.65
COL28A1-206ENST00000465339 RBM33Q96EV2 1170 aaKnown RBP19.08■□□□□ 0.64
COL28A1-206ENST00000465339 ADGRF5Q8IZF2 1346 aa19.07■□□□□ 0.64
COL28A1-206ENST00000465339 MSH6P52701 1360 aa19.06■□□□□ 0.64
COL28A1-206ENST00000465339 SETD1AO15047 1707 aaKnown RBP19.06■□□□□ 0.64
COL28A1-206ENST00000465339 XRN1Q8IZH2 1706 aaKnown RBP19.06■□□□□ 0.64
COL28A1-206ENST00000465339 C14orf37Q86TY3 774 aa19.03■□□□□ 0.64
COL28A1-206ENST00000465339 STAC3Q96MF2 364 aa19.03■□□□□ 0.64
COL28A1-206ENST00000465339 C19orf44Q9H6X5 657 aa19.03■□□□□ 0.64
COL28A1-206ENST00000465339 MYOM2P54296 1465 aa19.01■□□□□ 0.63
COL28A1-206ENST00000465339 PIK3C2GO75747 1445 aa19■□□□□ 0.63
COL28A1-206ENST00000465339 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.99■□□□□ 0.63
COL28A1-206ENST00000465339 NRXN1Q9ULB1 1477 aa18.98■□□□□ 0.63
COL28A1-206ENST00000465339 ATF3P18847 181 aa18.98■□□□□ 0.63
COL28A1-206ENST00000465339 HSPA1LP34931 641 aa18.98■□□□□ 0.63
COL28A1-206ENST00000465339 CADPS2Q86UW7 1296 aa18.98■□□□□ 0.63
COL28A1-206ENST00000465339 C14orf93Q9H972 538 aaKnown RBP18.98■□□□□ 0.63
COL28A1-206ENST00000465339 SLAIN2Q9P270 581 aa18.98■□□□□ 0.63
COL28A1-206ENST00000465339 U3KPZ7 1027 aaPredicted RBP18.98■□□□□ 0.63
COL28A1-206ENST00000465339 FAM135BQ49AJ0 1406 aa18.98■□□□□ 0.63
COL28A1-206ENST00000465339 PRAG1Q86YV5 1406 aa18.98■□□□□ 0.63
COL28A1-206ENST00000465339 DCAF11Q8TEB1 546 aa18.97■□□□□ 0.63
COL28A1-206ENST00000465339 PTCH1Q13635 1447 aa18.96■□□□□ 0.63
COL28A1-206ENST00000465339 LAMC1P11047 1609 aa18.96■□□□□ 0.63
COL28A1-206ENST00000465339 KDM2AQ9Y2K7 1162 aa18.95■□□□□ 0.62
COL28A1-206ENST00000465339 DCCP43146 1447 aa18.94■□□□□ 0.62
COL28A1-206ENST00000465339 ROBO2Q9HCK4 1378 aa18.93■□□□□ 0.62
COL28A1-206ENST00000465339 C1QBPQ07021 282 aaKnown RBP18.93■□□□□ 0.62
COL28A1-206ENST00000465339 CFAP70Q5T0N1 1121 aa18.93■□□□□ 0.62
COL28A1-206ENST00000465339 TMEM132EQ6IEE7 984 aa18.93■□□□□ 0.62
COL28A1-206ENST00000465339 LRPPRCP42704 1394 aaKnown RBP18.93■□□□□ 0.62
COL28A1-206ENST00000465339 DHX57Q6P158 1386 aaKnown RBP18.93■□□□□ 0.62
COL28A1-206ENST00000465339 ABCC11Q96J66 1382 aa18.93■□□□□ 0.62
COL28A1-206ENST00000465339 ADGRL3Q9HAR2 1447 aa18.92■□□□□ 0.62
COL28A1-206ENST00000465339 ROBO1Q9Y6N7 1651 aa18.92■□□□□ 0.62
COL28A1-206ENST00000465339 STK26Q9P289 416 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms