RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 BCANQ96GW7 911 aa26.24■■□□□ 1.79
CPSF4-209ENST00000465132 ZFYVE9O95405 1425 aa26.23■■□□□ 1.79
CPSF4-209ENST00000465132 UNC13BO14795 1591 aa26.22■■□□□ 1.79
CPSF4-209ENST00000465132 RBM33Q96EV2 1170 aaKnown RBP26.22■■□□□ 1.79
CPSF4-209ENST00000465132 NKTRP30414 1462 aaKnown RBP26.22■■□□□ 1.79
CPSF4-209ENST00000465132 ROCK1Q13464 1354 aa26.21■■□□□ 1.79
CPSF4-209ENST00000465132 NWD1Q149M9 1564 aa26.21■■□□□ 1.79
CPSF4-209ENST00000465132 PLEKHG1Q9ULL1 1385 aa26.2■■□□□ 1.79
CPSF4-209ENST00000465132 RIMS2Q9UQ26 1411 aa26.2■■□□□ 1.78
CPSF4-209ENST00000465132 GCC2Q8IWJ2 1684 aa26.19■■□□□ 1.78
CPSF4-209ENST00000465132 TMEM131LA2VDJ0 1609 aa26.19■■□□□ 1.78
CPSF4-209ENST00000465132 HDGFP51858 240 aaKnown RBP26.19■■□□□ 1.78
CPSF4-209ENST00000465132 PPP1R15AO75807 674 aaPredicted RBP26.18■■□□□ 1.78
CPSF4-209ENST00000465132 ITGAEP38570 1179 aa26.16■■□□□ 1.78
CPSF4-209ENST00000465132 MYO5BQ9ULV0 1848 aa26.16■■□□□ 1.78
CPSF4-209ENST00000465132 E9PCH4 1651 aa26.13■■□□□ 1.77
CPSF4-209ENST00000465132 MSH6P52701 1360 aa26.13■■□□□ 1.77
CPSF4-209ENST00000465132 CHGAP10645 457 aaKnown RBP26.13■■□□□ 1.77
CPSF4-209ENST00000465132 TRIM26Q12899 539 aaPredicted RBP26.13■■□□□ 1.77
CPSF4-209ENST00000465132 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.13■■□□□ 1.77
CPSF4-209ENST00000465132 TBX22Q9Y458 520 aa26.12■■□□□ 1.77
CPSF4-209ENST00000465132 IQGAP3Q86VI3 1631 aa26.12■■□□□ 1.77
CPSF4-209ENST00000465132 ROBO1Q9Y6N7 1651 aa26.12■■□□□ 1.77
CPSF4-209ENST00000465132 RGS17Q9UGC6 210 aaPredicted RBP26.11■■□□□ 1.77
CPSF4-209ENST00000465132 NUP155O75694 1391 aa26.1■■□□□ 1.77
CPSF4-209ENST00000465132 CHD2O14647 1828 aaKnown RBP26.09■■□□□ 1.77
CPSF4-209ENST00000465132 SLAIN2Q9P270 581 aa26.08■■□□□ 1.77
CPSF4-209ENST00000465132 NUTM2DQ5VT03 806 aaPredicted RBP26.07■■□□□ 1.76
CPSF4-209ENST00000465132 ADAMTS13Q76LX8 1427 aa26.06■■□□□ 1.76
CPSF4-209ENST00000465132 ACIN1Q9UKV3 1341 aaKnown RBP26.05■■□□□ 1.76
CPSF4-209ENST00000465132 NCOA3Q9Y6Q9 1424 aa26.04■■□□□ 1.76
CPSF4-209ENST00000465132 DIP2AQ14689 1571 aa26.02■■□□□ 1.76
CPSF4-209ENST00000465132 PIK3R4Q99570 1358 aa26.01■■□□□ 1.75
CPSF4-209ENST00000465132 C14orf37Q86TY3 774 aa25.98■■□□□ 1.75
CPSF4-209ENST00000465132 HFM1A2PYH4 1435 aa25.97■■□□□ 1.75
CPSF4-209ENST00000465132 PHLPP1O60346 1717 aa25.95■■□□□ 1.74
CPSF4-209ENST00000465132 C19orf44Q9H6X5 657 aa25.95■■□□□ 1.74
CPSF4-209ENST00000465132 JCADQ9P266 1359 aa25.95■■□□□ 1.74
CPSF4-209ENST00000465132 TRPM2O94759 1503 aa25.94■■□□□ 1.74
CPSF4-209ENST00000465132 POTEAQ6S8J7 498 aa25.94■■□□□ 1.74
CPSF4-209ENST00000465132 CADPS2Q86UW7 1296 aa25.94■■□□□ 1.74
CPSF4-209ENST00000465132 AMOTL2Q9Y2J4 779 aa25.93■■□□□ 1.74
CPSF4-209ENST00000465132 PTPRUQ92729 1446 aa25.92■■□□□ 1.74
CPSF4-209ENST00000465132 ATF3P18847 181 aa25.91■■□□□ 1.74
CPSF4-209ENST00000465132 NAIPQ13075 1403 aa25.9■■□□□ 1.74
CPSF4-209ENST00000465132 SPHKAPQ2M3C7 1700 aa25.9■■□□□ 1.74
CPSF4-209ENST00000465132 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.9■■□□□ 1.74
CPSF4-209ENST00000465132 COL16A1Q07092 1604 aaPredicted RBP25.89■■□□□ 1.74
CPSF4-209ENST00000465132 SETBP1Q9Y6X0 1596 aa25.87■■□□□ 1.73
CPSF4-209ENST00000465132 ZNF326Q5BKZ1 582 aaKnown RBP25.87■■□□□ 1.73
CPSF4-209ENST00000465132 NRXN3Q9Y4C0 1643 aa25.87■■□□□ 1.73
CPSF4-209ENST00000465132 SETD5Q9C0A6 1442 aa25.87■■□□□ 1.73
CPSF4-209ENST00000465132 AHDC1Q5TGY3 1603 aaPredicted RBP25.84■■□□□ 1.73
CPSF4-209ENST00000465132 XRN1Q8IZH2 1706 aaKnown RBP25.83■■□□□ 1.72
CPSF4-209ENST00000465132 HRCP23327 699 aa25.82■■□□□ 1.72
CPSF4-209ENST00000465132 SPATA31A6Q5VVP1 1343 aa25.82■■□□□ 1.72
CPSF4-209ENST00000465132 METP08581 1390 aa25.82■■□□□ 1.72
CPSF4-209ENST00000465132 DCCP43146 1447 aa25.81■■□□□ 1.72
CPSF4-209ENST00000465132 CLTCL1P53675 1640 aa25.81■■□□□ 1.72
CPSF4-209ENST00000465132 BRINP3Q76B58 766 aa25.8■■□□□ 1.72
CPSF4-209ENST00000465132 LRP6O75581 1613 aa25.79■■□□□ 1.72
CPSF4-209ENST00000465132 NEXMIFQ5QGS0 1516 aa25.78■■□□□ 1.72
CPSF4-209ENST00000465132 MST1RQ04912 1400 aa25.74■■□□□ 1.71
CPSF4-209ENST00000465132 MEX3CQ5U5Q3 659 aaKnown RBP25.74■■□□□ 1.71
CPSF4-209ENST00000465132 SHPRHQ149N8 1683 aa25.74■■□□□ 1.71
CPSF4-209ENST00000465132 RAB3GAP2Q9H2M9 1393 aa25.73■■□□□ 1.71
CPSF4-209ENST00000465132 PCGF6Q9BYE7 350 aa25.73■■□□□ 1.71
CPSF4-209ENST00000465132 ASXL1Q8IXJ9 1541 aa25.73■■□□□ 1.71
CPSF4-209ENST00000465132 TRIM52Q96A61 297 aa25.72■■□□□ 1.71
CPSF4-209ENST00000465132 ADGRL3Q9HAR2 1447 aa25.71■■□□□ 1.71
CPSF4-209ENST00000465132 KIF1BO60333 1816 aa25.7■■□□□ 1.7
CPSF4-209ENST00000465132 ZNF772Q68DY9 489 aaPredicted RBP25.69■■□□□ 1.7
CPSF4-209ENST00000465132 VGFO15240 615 aaPredicted RBP25.68■■□□□ 1.7
CPSF4-209ENST00000465132 NUTM2BA6NNL0 878 aaPredicted RBP25.65■■□□□ 1.7
CPSF4-209ENST00000465132 NUTM2EB1AL46 878 aaPredicted RBP25.65■■□□□ 1.7
CPSF4-209ENST00000465132 NUTM2AQ8IVF1 878 aaPredicted RBP25.65■■□□□ 1.7
CPSF4-209ENST00000465132 SLC4A1APQ9BWU0 796 aaKnown RBP25.65■■□□□ 1.7
CPSF4-209ENST00000465132 SETD1AO15047 1707 aaKnown RBP25.65■■□□□ 1.7
CPSF4-209ENST00000465132 RPGRIP1LQ68CZ1 1315 aa25.64■■□□□ 1.7
CPSF4-209ENST00000465132 NHSL1Q5SYE7 1610 aa25.64■■□□□ 1.7
CPSF4-209ENST00000465132 NALCNQ8IZF0 1738 aa25.63■■□□□ 1.69
CPSF4-209ENST00000465132 LRRC59Q96AG4 307 aaKnown RBP25.63■■□□□ 1.69
CPSF4-209ENST00000465132 PTCH1Q13635 1447 aa25.63■■□□□ 1.69
CPSF4-209ENST00000465132 DDX17Q92841 729 aaKnown RBP25.61■■□□□ 1.69
CPSF4-209ENST00000465132 ROBO2Q9HCK4 1378 aa25.6■■□□□ 1.69
CPSF4-209ENST00000465132 C1orf167Q5SNV9 1468 aa25.6■■□□□ 1.69
CPSF4-209ENST00000465132 PRAG1Q86YV5 1406 aa25.59■■□□□ 1.69
CPSF4-209ENST00000465132 PNPLA6Q8IY17 1366 aa25.56■■□□□ 1.68
CPSF4-209ENST00000465132 RXRBP28702 533 aa25.56■■□□□ 1.68
CPSF4-209ENST00000465132 AFF2P51816 1311 aa25.56■■□□□ 1.68
CPSF4-209ENST00000465132 FOXD1Q16676 465 aa25.54■■□□□ 1.68
CPSF4-209ENST00000465132 PPLO60437 1756 aa25.54■■□□□ 1.68
CPSF4-209ENST00000465132 MPHOSPH9Q99550 1183 aa25.53■■□□□ 1.68
CPSF4-209ENST00000465132 ORAI2Q96SN7 254 aa25.52■■□□□ 1.68
CPSF4-209ENST00000465132 LAMC1P11047 1609 aa25.5■■□□□ 1.67
CPSF4-209ENST00000465132 C8orf37Q96NL8 207 aa25.5■■□□□ 1.67
CPSF4-209ENST00000465132 CDK12Q9NYV4 1490 aaPredicted RBP25.5■■□□□ 1.67
CPSF4-209ENST00000465132 SOS2Q07890 1332 aaPredicted RBP25.49■■□□□ 1.67
CPSF4-209ENST00000465132 UPF1Q92900 1129 aaKnown RBP eCLIP25.49■■□□□ 1.67
CPSF4-209ENST00000465132 CCDC144AA2RUR9 1427 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 653.2 ms