RNA–Protein interactions for RNA: ENST00000465074.1

XRN1-204, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 643 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-204ENST00000465074 HFM1A2PYH4 1435 aa18.28■□□□□ 0.52
XRN1-204ENST00000465074 TMEM131LA2VDJ0 1609 aa18.27■□□□□ 0.51
XRN1-204ENST00000465074 SPHKAPQ2M3C7 1700 aa18.26■□□□□ 0.51
XRN1-204ENST00000465074 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
XRN1-204ENST00000465074 CPS1P31327 1500 aa18.26■□□□□ 0.51
XRN1-204ENST00000465074 IQSEC2Q5JU85 1478 aa18.26■□□□□ 0.51
XRN1-204ENST00000465074 STRCP1A6NGW2 1772 aa18.25■□□□□ 0.51
XRN1-204ENST00000465074 HDGFP51858 240 aaKnown RBP18.25■□□□□ 0.51
XRN1-204ENST00000465074 SLC4A1APQ9BWU0 796 aaKnown RBP18.25■□□□□ 0.51
XRN1-204ENST00000465074 RIMS2Q9UQ26 1411 aa18.24■□□□□ 0.51
XRN1-204ENST00000465074 ZNF326Q5BKZ1 582 aaKnown RBP18.23■□□□□ 0.51
XRN1-204ENST00000465074 PIP4K2BP78356 416 aa18.22■□□□□ 0.51
XRN1-204ENST00000465074 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.2■□□□□ 0.5
XRN1-204ENST00000465074 ZFYVE9O95405 1425 aa18.18■□□□□ 0.5
XRN1-204ENST00000465074 TOM1O60784 492 aa18.18■□□□□ 0.5
XRN1-204ENST00000465074 LRRC7Q96NW7 1537 aa18.18■□□□□ 0.5
XRN1-204ENST00000465074 CLTCL1P53675 1640 aa18.16■□□□□ 0.5
XRN1-204ENST00000465074 RBM33Q96EV2 1170 aaKnown RBP18.16■□□□□ 0.5
XRN1-204ENST00000465074 KIF1BO60333 1816 aa18.16■□□□□ 0.5
XRN1-204ENST00000465074 PLEKHG1Q9ULL1 1385 aa18.16■□□□□ 0.5
XRN1-204ENST00000465074 PROSER2Q86WR7 435 aaPredicted RBP18.15■□□□□ 0.5
XRN1-204ENST00000465074 KCNA6P17658 529 aa18.14■□□□□ 0.49
XRN1-204ENST00000465074 SETD5Q9C0A6 1442 aa18.14■□□□□ 0.49
XRN1-204ENST00000465074 TRPM2O94759 1503 aa18.13■□□□□ 0.49
XRN1-204ENST00000465074 MPHOSPH9Q99550 1183 aa18.13■□□□□ 0.49
XRN1-204ENST00000465074 XIRP1Q702N8 1843 aaKnown RBP18.11■□□□□ 0.49
XRN1-204ENST00000465074 TBX22Q9Y458 520 aa18.09■□□□□ 0.49
XRN1-204ENST00000465074 TMEM94Q12767 1356 aa18.08■□□□□ 0.49
XRN1-204ENST00000465074 CHD2O14647 1828 aaKnown RBP18.08■□□□□ 0.48
XRN1-204ENST00000465074 RAB3GAP2Q9H2M9 1393 aa18.07■□□□□ 0.48
XRN1-204ENST00000465074 C14orf37Q86TY3 774 aa18.07■□□□□ 0.48
XRN1-204ENST00000465074 HSPA1LP34931 641 aa18.06■□□□□ 0.48
XRN1-204ENST00000465074 RGL3Q3MIN7 710 aa18.05■□□□□ 0.48
XRN1-204ENST00000465074 ADAMTS13Q76LX8 1427 aa18.05■□□□□ 0.48
XRN1-204ENST00000465074 NEXMIFQ5QGS0 1516 aa18.04■□□□□ 0.48
XRN1-204ENST00000465074 DIP2AQ14689 1571 aa18.04■□□□□ 0.48
XRN1-204ENST00000465074 NWD1Q149M9 1564 aa18.04■□□□□ 0.48
XRN1-204ENST00000465074 ALKQ9UM73 1620 aa18.03■□□□□ 0.48
XRN1-204ENST00000465074 CCDC144AA2RUR9 1427 aa18.03■□□□□ 0.48
XRN1-204ENST00000465074 NKTRP30414 1462 aaKnown RBP18.02■□□□□ 0.48
XRN1-204ENST00000465074 AMOTL2Q9Y2J4 779 aa18.02■□□□□ 0.48
XRN1-204ENST00000465074 ACIN1Q9UKV3 1341 aaKnown RBP18.01■□□□□ 0.47
XRN1-204ENST00000465074 VGFO15240 615 aaPredicted RBP18.01■□□□□ 0.47
XRN1-204ENST00000465074 NRXN3Q9Y4C0 1643 aa18■□□□□ 0.47
XRN1-204ENST00000465074 MSH6P52701 1360 aa18■□□□□ 0.47
XRN1-204ENST00000465074 DISP3Q9P2K9 1392 aa17.99■□□□□ 0.47
XRN1-204ENST00000465074 SETBP1Q9Y6X0 1596 aa17.99■□□□□ 0.47
XRN1-204ENST00000465074 PIK3R4Q99570 1358 aa17.98■□□□□ 0.47
XRN1-204ENST00000465074 PPLO60437 1756 aa17.98■□□□□ 0.47
XRN1-204ENST00000465074 PTPRUQ92729 1446 aa17.98■□□□□ 0.47
XRN1-204ENST00000465074 RPGRIP1LQ68CZ1 1315 aa17.98■□□□□ 0.47
XRN1-204ENST00000465074 METP08581 1390 aa17.97■□□□□ 0.47
XRN1-204ENST00000465074 ATF3P18847 181 aa17.93■□□□□ 0.46
XRN1-204ENST00000465074 SLAIN2Q9P270 581 aa17.93■□□□□ 0.46
XRN1-204ENST00000465074 ROBO1Q9Y6N7 1651 aa17.92■□□□□ 0.46
XRN1-204ENST00000465074 ADGRF5Q8IZF2 1346 aa17.92■□□□□ 0.46
XRN1-204ENST00000465074 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.92■□□□□ 0.46
XRN1-204ENST00000465074 XRN1Q8IZH2 1706 aaKnown RBP17.91■□□□□ 0.46
XRN1-204ENST00000465074 SPATA31E1Q6ZUB1 1445 aa17.9■□□□□ 0.46
XRN1-204ENST00000465074 C19orf44Q9H6X5 657 aa17.9■□□□□ 0.46
XRN1-204ENST00000465074 STK26Q9P289 416 aa17.89■□□□□ 0.45
XRN1-204ENST00000465074 IFT172Q9UG01 1749 aa17.89■□□□□ 0.45
XRN1-204ENST00000465074 CADPS2Q86UW7 1296 aa17.88■□□□□ 0.45
XRN1-204ENST00000465074 FAM135BQ49AJ0 1406 aa17.88■□□□□ 0.45
XRN1-204ENST00000465074 NCOA3Q9Y6Q9 1424 aa17.88■□□□□ 0.45
XRN1-204ENST00000465074 SETD1AO15047 1707 aaKnown RBP17.87■□□□□ 0.45
XRN1-204ENST00000465074 HRCP23327 699 aa17.87■□□□□ 0.45
XRN1-204ENST00000465074 ANKRD30BQ9BXX2 1392 aa17.87■□□□□ 0.45
XRN1-204ENST00000465074 TMEM132EQ6IEE7 984 aa17.85■□□□□ 0.45
XRN1-204ENST00000465074 KDM2AQ9Y2K7 1162 aa17.85■□□□□ 0.45
XRN1-204ENST00000465074 PHLPP1O60346 1717 aa17.84■□□□□ 0.45
XRN1-204ENST00000465074 NALCNQ8IZF0 1738 aa17.83■□□□□ 0.44
XRN1-204ENST00000465074 MED1Q15648 1581 aaPredicted RBP17.83■□□□□ 0.44
XRN1-204ENST00000465074 ROBO2Q9HCK4 1378 aa17.82■□□□□ 0.44
XRN1-204ENST00000465074 DCAF11Q8TEB1 546 aa17.8■□□□□ 0.44
XRN1-204ENST00000465074 ADGRL3Q9HAR2 1447 aa17.8■□□□□ 0.44
XRN1-204ENST00000465074 CFAP70Q5T0N1 1121 aa17.79■□□□□ 0.44
XRN1-204ENST00000465074 ILDR2Q71H61 639 aa17.79■□□□□ 0.44
XRN1-204ENST00000465074 PIK3C2GO75747 1445 aa17.79■□□□□ 0.44
XRN1-204ENST00000465074 WAPLQ7Z5K2 1190 aa17.78■□□□□ 0.44
XRN1-204ENST00000465074 BRINP3Q76B58 766 aa17.77■□□□□ 0.44
XRN1-204ENST00000465074 PTCH1Q13635 1447 aa17.77■□□□□ 0.44
XRN1-204ENST00000465074 DCCP43146 1447 aa17.76■□□□□ 0.43
XRN1-204ENST00000465074 C14orf93Q9H972 538 aaKnown RBP17.76■□□□□ 0.43
XRN1-204ENST00000465074 MST1RQ04912 1400 aa17.75■□□□□ 0.43
XRN1-204ENST00000465074 LRPPRCP42704 1394 aaKnown RBP17.75■□□□□ 0.43
XRN1-204ENST00000465074 MYOM2P54296 1465 aa17.75■□□□□ 0.43
XRN1-204ENST00000465074 ASXL1Q8IXJ9 1541 aa17.74■□□□□ 0.43
XRN1-204ENST00000465074 ADRA2BP18089 450 aa17.74■□□□□ 0.43
XRN1-204ENST00000465074 YTHDC2Q9H6S0 1430 aaKnown RBP17.73■□□□□ 0.43
XRN1-204ENST00000465074 NUTM2FA1L443 756 aa17.73■□□□□ 0.43
XRN1-204ENST00000465074 SAFB2Q14151 953 aaKnown RBP eCLIP17.73■□□□□ 0.43
XRN1-204ENST00000465074 DDX17Q92841 729 aaKnown RBP17.73■□□□□ 0.43
XRN1-204ENST00000465074 DHX57Q6P158 1386 aaKnown RBP17.73■□□□□ 0.43
XRN1-204ENST00000465074 LAMC1P11047 1609 aa17.72■□□□□ 0.43
XRN1-204ENST00000465074 COL16A1Q07092 1604 aaPredicted RBP17.72■□□□□ 0.43
XRN1-204ENST00000465074 NRXN1Q9ULB1 1477 aa17.71■□□□□ 0.43
XRN1-204ENST00000465074 PLEKHH1Q9ULM0 1364 aa17.71■□□□□ 0.43
XRN1-204ENST00000465074 KNDC1Q76NI1 1749 aa17.7■□□□□ 0.42
XRN1-204ENST00000465074 ABCC11Q96J66 1382 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms