RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 DISP3Q9P2K9 1392 aa17.43■□□□□ 0.38
USP54-209ENST00000464635 PIP4K2BP78356 416 aa17.43■□□□□ 0.38
USP54-209ENST00000464635 HFM1A2PYH4 1435 aa17.41■□□□□ 0.38
USP54-209ENST00000464635 ZFYVE9O95405 1425 aa17.41■□□□□ 0.38
USP54-209ENST00000464635 SLC52A1Q9NWF4 448 aa17.41■□□□□ 0.38
USP54-209ENST00000464635 SPHKAPQ2M3C7 1700 aa17.41■□□□□ 0.38
USP54-209ENST00000464635 CCER1Q8TC90 406 aaPredicted RBP17.4■□□□□ 0.38
USP54-209ENST00000464635 NWD1Q149M9 1564 aa17.4■□□□□ 0.38
USP54-209ENST00000464635 TOM1O60784 492 aa17.39■□□□□ 0.37
USP54-209ENST00000464635 NUP155O75694 1391 aa17.39■□□□□ 0.37
USP54-209ENST00000464635 HSPA1LP34931 641 aa17.38■□□□□ 0.37
USP54-209ENST00000464635 SENP3Q9H4L4 574 aaPredicted RBP17.38■□□□□ 0.37
USP54-209ENST00000464635 RIMS2Q9UQ26 1411 aa17.38■□□□□ 0.37
USP54-209ENST00000464635 SLC26A8Q96RN1 970 aa17.37■□□□□ 0.37
USP54-209ENST00000464635 ILDR2Q71H61 639 aa17.36■□□□□ 0.37
USP54-209ENST00000464635 CHD2O14647 1828 aaKnown RBP17.35■□□□□ 0.37
USP54-209ENST00000464635 RAB3GAP2Q9H2M9 1393 aa17.35■□□□□ 0.37
USP54-209ENST00000464635 NAIPQ13075 1403 aa17.34■□□□□ 0.37
USP54-209ENST00000464635 MED1Q15648 1581 aaPredicted RBP17.33■□□□□ 0.37
USP54-209ENST00000464635 PLEKHG1Q9ULL1 1385 aa17.33■□□□□ 0.36
USP54-209ENST00000464635 CHGAP10645 457 aaKnown RBP17.33■□□□□ 0.36
USP54-209ENST00000464635 NKTRP30414 1462 aaKnown RBP17.32■□□□□ 0.36
USP54-209ENST00000464635 DHX57Q6P158 1386 aaKnown RBP17.32■□□□□ 0.36
USP54-209ENST00000464635 CLTCL1P53675 1640 aa17.32■□□□□ 0.36
USP54-209ENST00000464635 TMEM94Q12767 1356 aa17.31■□□□□ 0.36
USP54-209ENST00000464635 KCNA6P17658 529 aa17.3■□□□□ 0.36
USP54-209ENST00000464635 RBM33Q96EV2 1170 aaKnown RBP17.3■□□□□ 0.36
USP54-209ENST00000464635 PPP1R15AO75807 674 aaPredicted RBP17.29■□□□□ 0.36
USP54-209ENST00000464635 NUTM2DQ5VT03 806 aaPredicted RBP17.29■□□□□ 0.36
USP54-209ENST00000464635 BCANQ96GW7 911 aa17.29■□□□□ 0.36
USP54-209ENST00000464635 ADAMTS13Q76LX8 1427 aa17.29■□□□□ 0.36
USP54-209ENST00000464635 NRXN3Q9Y4C0 1643 aa17.28■□□□□ 0.36
USP54-209ENST00000464635 DIP2AQ14689 1571 aa17.28■□□□□ 0.36
USP54-209ENST00000464635 TRPM2O94759 1503 aa17.27■□□□□ 0.36
USP54-209ENST00000464635 ROBO1Q9Y6N7 1651 aa17.26■□□□□ 0.35
USP54-209ENST00000464635 PROSER2Q86WR7 435 aaPredicted RBP17.26■□□□□ 0.35
USP54-209ENST00000464635 KIF1BO60333 1816 aa17.26■□□□□ 0.35
USP54-209ENST00000464635 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.23■□□□□ 0.35
USP54-209ENST00000464635 NEXMIFQ5QGS0 1516 aa17.22■□□□□ 0.35
USP54-209ENST00000464635 HDGFP51858 240 aaKnown RBP17.22■□□□□ 0.35
USP54-209ENST00000464635 SETBP1Q9Y6X0 1596 aa17.22■□□□□ 0.35
USP54-209ENST00000464635 XRN1Q8IZH2 1706 aaKnown RBP17.21■□□□□ 0.35
USP54-209ENST00000464635 TIMELESSQ9UNS1 1208 aa17.21■□□□□ 0.35
USP54-209ENST00000464635 TBX22Q9Y458 520 aa17.21■□□□□ 0.35
USP54-209ENST00000464635 FAM135BQ49AJ0 1406 aa17.2■□□□□ 0.34
USP54-209ENST00000464635 PTPRUQ92729 1446 aa17.2■□□□□ 0.34
USP54-209ENST00000464635 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.19■□□□□ 0.34
USP54-209ENST00000464635 MSH6P52701 1360 aa17.18■□□□□ 0.34
USP54-209ENST00000464635 PHLPP1O60346 1717 aa17.17■□□□□ 0.34
USP54-209ENST00000464635 TRIM52Q96A61 297 aa17.17■□□□□ 0.34
USP54-209ENST00000464635 PIK3R4Q99570 1358 aa17.16■□□□□ 0.34
USP54-209ENST00000464635 SETD1AO15047 1707 aaKnown RBP17.16■□□□□ 0.34
USP54-209ENST00000464635 ZNF326Q5BKZ1 582 aaKnown RBP17.16■□□□□ 0.34
USP54-209ENST00000464635 PPLO60437 1756 aa17.15■□□□□ 0.34
USP54-209ENST00000464635 SOCS7O14512 581 aa17.15■□□□□ 0.34
USP54-209ENST00000464635 METP08581 1390 aa17.13■□□□□ 0.33
USP54-209ENST00000464635 SLC4A1APQ9BWU0 796 aaKnown RBP17.12■□□□□ 0.33
USP54-209ENST00000464635 AMOTL2Q9Y2J4 779 aa17.12■□□□□ 0.33
USP54-209ENST00000464635 NCOA3Q9Y6Q9 1424 aa17.12■□□□□ 0.33
USP54-209ENST00000464635 COL16A1Q07092 1604 aaPredicted RBP17.11■□□□□ 0.33
USP54-209ENST00000464635 NALCNQ8IZF0 1738 aa17.11■□□□□ 0.33
USP54-209ENST00000464635 FOXD1Q16676 465 aa17.1■□□□□ 0.33
USP54-209ENST00000464635 C14orf37Q86TY3 774 aa17.1■□□□□ 0.33
USP54-209ENST00000464635 SLAIN2Q9P270 581 aa17.09■□□□□ 0.33
USP54-209ENST00000464635 IFT172Q9UG01 1749 aa17.08■□□□□ 0.32
USP54-209ENST00000464635 PHF23Q9BUL5 403 aaPredicted RBP17.08■□□□□ 0.32
USP54-209ENST00000464635 AHDC1Q5TGY3 1603 aaPredicted RBP17.07■□□□□ 0.32
USP54-209ENST00000464635 C19orf44Q9H6X5 657 aa17.05■□□□□ 0.32
USP54-209ENST00000464635 DCCP43146 1447 aa17.04■□□□□ 0.32
USP54-209ENST00000464635 CADPS2Q86UW7 1296 aa17.03■□□□□ 0.32
USP54-209ENST00000464635 MPHOSPH9Q99550 1183 aa17.03■□□□□ 0.32
USP54-209ENST00000464635 ADGRL3Q9HAR2 1447 aa17.03■□□□□ 0.32
USP54-209ENST00000464635 NHSL1Q5SYE7 1610 aa17.03■□□□□ 0.32
USP54-209ENST00000464635 SHPRHQ149N8 1683 aa17.02■□□□□ 0.32
USP54-209ENST00000464635 ATF3P18847 181 aa17.02■□□□□ 0.32
USP54-209ENST00000464635 RGS17Q9UGC6 210 aaPredicted RBP17.02■□□□□ 0.32
USP54-209ENST00000464635 MST1RQ04912 1400 aa17.02■□□□□ 0.31
USP54-209ENST00000464635 ASXL1Q8IXJ9 1541 aa17.01■□□□□ 0.31
USP54-209ENST00000464635 CCDC144AA2RUR9 1427 aa17.01■□□□□ 0.31
USP54-209ENST00000464635 SPATA31E1Q6ZUB1 1445 aa17.01■□□□□ 0.31
USP54-209ENST00000464635 JCADQ9P266 1359 aa17■□□□□ 0.31
USP54-209ENST00000464635 PTCH1Q13635 1447 aa16.99■□□□□ 0.31
USP54-209ENST00000464635 VGFO15240 615 aaPredicted RBP16.99■□□□□ 0.31
USP54-209ENST00000464635 ROBO2Q9HCK4 1378 aa16.99■□□□□ 0.31
USP54-209ENST00000464635 LRP6O75581 1613 aa16.99■□□□□ 0.31
USP54-209ENST00000464635 RPGRIP1LQ68CZ1 1315 aa16.98■□□□□ 0.31
USP54-209ENST00000464635 BRINP3Q76B58 766 aa16.98■□□□□ 0.31
USP54-209ENST00000464635 PRAG1Q86YV5 1406 aa16.97■□□□□ 0.31
USP54-209ENST00000464635 ADGRF5Q8IZF2 1346 aa16.96■□□□□ 0.31
USP54-209ENST00000464635 ANKRD30BQ9BXX2 1392 aa16.95■□□□□ 0.3
USP54-209ENST00000464635 RGL3Q3MIN7 710 aa16.95■□□□□ 0.3
USP54-209ENST00000464635 KNDC1Q76NI1 1749 aa16.95■□□□□ 0.3
USP54-209ENST00000464635 POTEAQ6S8J7 498 aa16.93■□□□□ 0.3
USP54-209ENST00000464635 LAMC1P11047 1609 aa16.92■□□□□ 0.3
USP54-209ENST00000464635 PIK3C2GO75747 1445 aa16.92■□□□□ 0.3
USP54-209ENST00000464635 C1orf167Q5SNV9 1468 aa16.92■□□□□ 0.3
USP54-209ENST00000464635 DDX17Q92841 729 aaKnown RBP16.91■□□□□ 0.3
USP54-209ENST00000464635 CDC42BPGQ6DT37 1551 aa16.9■□□□□ 0.3
USP54-209ENST00000464635 SPATA31A6Q5VVP1 1343 aa16.89■□□□□ 0.29
USP54-209ENST00000464635 TECPR2O15040 1411 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms