RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 NOS1P29475 1434 aa22.62■■□□□ 1.21
SMC1A-204ENST00000463684 JCADQ9P266 1359 aa22.61■■□□□ 1.21
SMC1A-204ENST00000463684 PPP1R15AO75807 674 aaPredicted RBP22.6■■□□□ 1.21
SMC1A-204ENST00000463684 FGD6Q6ZV73 1430 aa22.59■■□□□ 1.21
SMC1A-204ENST00000463684 ADGRB3O60242 1522 aa22.59■■□□□ 1.21
SMC1A-204ENST00000463684 NWD1Q149M9 1564 aa22.57■■□□□ 1.2
SMC1A-204ENST00000463684 PLEKHG1Q9ULL1 1385 aa22.56■■□□□ 1.2
SMC1A-204ENST00000463684 C14orf37Q86TY3 774 aa22.56■■□□□ 1.2
SMC1A-204ENST00000463684 TBX22Q9Y458 520 aa22.54■■□□□ 1.2
SMC1A-204ENST00000463684 PHLPP1O60346 1717 aa22.54■■□□□ 1.2
SMC1A-204ENST00000463684 MEX3CQ5U5Q3 659 aaKnown RBP22.53■■□□□ 1.2
SMC1A-204ENST00000463684 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.53■■□□□ 1.2
SMC1A-204ENST00000463684 RIMS2Q9UQ26 1411 aa22.52■■□□□ 1.2
SMC1A-204ENST00000463684 RPRD2Q5VT52 1461 aaKnown RBP22.52■■□□□ 1.2
SMC1A-204ENST00000463684 SPATA31A6Q5VVP1 1343 aa22.52■■□□□ 1.2
SMC1A-204ENST00000463684 ZFYVE9O95405 1425 aa22.51■■□□□ 1.19
SMC1A-204ENST00000463684 NCOA3Q9Y6Q9 1424 aa22.51■■□□□ 1.19
SMC1A-204ENST00000463684 CHGAP10645 457 aaKnown RBP22.51■■□□□ 1.19
SMC1A-204ENST00000463684 ZNF772Q68DY9 489 aaPredicted RBP22.51■■□□□ 1.19
SMC1A-204ENST00000463684 ATF3P18847 181 aa22.49■■□□□ 1.19
SMC1A-204ENST00000463684 FAM50AQ14320 339 aaKnown RBP22.49■■□□□ 1.19
SMC1A-204ENST00000463684 CADPS2Q86UW7 1296 aa22.49■■□□□ 1.19
SMC1A-204ENST00000463684 C19orf44Q9H6X5 657 aa22.48■■□□□ 1.19
SMC1A-204ENST00000463684 ANKRD50Q9ULJ7 1429 aa22.48■■□□□ 1.19
SMC1A-204ENST00000463684 ADGRL2O95490 1459 aa22.47■■□□□ 1.19
SMC1A-204ENST00000463684 CHD2O14647 1828 aaKnown RBP22.45■■□□□ 1.18
SMC1A-204ENST00000463684 NUTM2DQ5VT03 806 aaPredicted RBP22.44■■□□□ 1.18
SMC1A-204ENST00000463684 TRIM52Q96A61 297 aa22.44■■□□□ 1.18
SMC1A-204ENST00000463684 COL16A1Q07092 1604 aaPredicted RBP22.43■■□□□ 1.18
SMC1A-204ENST00000463684 UPF1Q92900 1129 aaKnown RBP eCLIP22.43■■□□□ 1.18
SMC1A-204ENST00000463684 SETD1AO15047 1707 aaKnown RBP22.43■■□□□ 1.18
SMC1A-204ENST00000463684 PIK3R4Q99570 1358 aa22.41■■□□□ 1.18
SMC1A-204ENST00000463684 TMEM131LA2VDJ0 1609 aa22.41■■□□□ 1.18
SMC1A-204ENST00000463684 LRP6O75581 1613 aa22.41■■□□□ 1.18
SMC1A-204ENST00000463684 RXRBP28702 533 aa22.4■■□□□ 1.18
SMC1A-204ENST00000463684 AMOTL2Q9Y2J4 779 aa22.39■■□□□ 1.17
SMC1A-204ENST00000463684 GCC2Q8IWJ2 1684 aa22.39■■□□□ 1.17
SMC1A-204ENST00000463684 ADAMTS13Q76LX8 1427 aa22.39■■□□□ 1.17
SMC1A-204ENST00000463684 NUTM2BA6NNL0 878 aaPredicted RBP22.38■■□□□ 1.17
SMC1A-204ENST00000463684 NUTM2EB1AL46 878 aaPredicted RBP22.38■■□□□ 1.17
SMC1A-204ENST00000463684 NUTM2AQ8IVF1 878 aaPredicted RBP22.38■■□□□ 1.17
SMC1A-204ENST00000463684 AHDC1Q5TGY3 1603 aaPredicted RBP22.36■■□□□ 1.17
SMC1A-204ENST00000463684 BRINP3Q76B58 766 aa22.36■■□□□ 1.17
SMC1A-204ENST00000463684 MYO5BQ9ULV0 1848 aa22.36■■□□□ 1.17
SMC1A-204ENST00000463684 DIP2AQ14689 1571 aa22.35■■□□□ 1.17
SMC1A-204ENST00000463684 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.34■■□□□ 1.17
SMC1A-204ENST00000463684 SHPRHQ149N8 1683 aa22.31■■□□□ 1.16
SMC1A-204ENST00000463684 TRPM2O94759 1503 aa22.31■■□□□ 1.16
SMC1A-204ENST00000463684 AFF2P51816 1311 aa22.3■■□□□ 1.16
SMC1A-204ENST00000463684 LRRC59Q96AG4 307 aaKnown RBP22.29■■□□□ 1.16
SMC1A-204ENST00000463684 PTPRUQ92729 1446 aa22.29■■□□□ 1.16
SMC1A-204ENST00000463684 DCCP43146 1447 aa22.28■■□□□ 1.16
SMC1A-204ENST00000463684 UNC13BO14795 1591 aa22.28■■□□□ 1.16
SMC1A-204ENST00000463684 CDK12Q9NYV4 1490 aaPredicted RBP22.27■■□□□ 1.16
SMC1A-204ENST00000463684 NUP155O75694 1391 aa22.26■■□□□ 1.15
SMC1A-204ENST00000463684 E9PCH4 1651 aa22.26■■□□□ 1.15
SMC1A-204ENST00000463684 SETD5Q9C0A6 1442 aa22.25■■□□□ 1.15
SMC1A-204ENST00000463684 ZNF326Q5BKZ1 582 aaKnown RBP22.24■■□□□ 1.15
SMC1A-204ENST00000463684 ROCK1Q13464 1354 aa22.24■■□□□ 1.15
SMC1A-204ENST00000463684 ASXL1Q8IXJ9 1541 aa22.23■■□□□ 1.15
SMC1A-204ENST00000463684 C8orf37Q96NL8 207 aa22.23■■□□□ 1.15
SMC1A-204ENST00000463684 QTRT2Q9H974 415 aaKnown RBP22.23■■□□□ 1.15
SMC1A-204ENST00000463684 RBM6P78332 1123 aaKnown RBP22.21■■□□□ 1.15
SMC1A-204ENST00000463684 MST1RQ04912 1400 aa22.21■■□□□ 1.15
SMC1A-204ENST00000463684 IQGAP3Q86VI3 1631 aa22.2■■□□□ 1.14
SMC1A-204ENST00000463684 DDX17Q92841 729 aaKnown RBP22.18■■□□□ 1.14
SMC1A-204ENST00000463684 METP08581 1390 aa22.17■■□□□ 1.14
SMC1A-204ENST00000463684 ITGAEP38570 1179 aa22.17■■□□□ 1.14
SMC1A-204ENST00000463684 NGLY1Q96IV0 654 aa22.17■■□□□ 1.14
SMC1A-204ENST00000463684 SETBP1Q9Y6X0 1596 aa22.16■■□□□ 1.14
SMC1A-204ENST00000463684 PNPLA6Q8IY17 1366 aa22.15■■□□□ 1.14
SMC1A-204ENST00000463684 ADAMTS2O95450 1211 aa22.14■■□□□ 1.13
SMC1A-204ENST00000463684 XRN1Q8IZH2 1706 aaKnown RBP22.14■■□□□ 1.13
SMC1A-204ENST00000463684 ADGRL3Q9HAR2 1447 aa22.14■■□□□ 1.13
SMC1A-204ENST00000463684 RGS12O14924 1447 aa22.13■■□□□ 1.13
SMC1A-204ENST00000463684 NHSL1Q5SYE7 1610 aa22.13■■□□□ 1.13
SMC1A-204ENST00000463684 NRXN3Q9Y4C0 1643 aa22.11■■□□□ 1.13
SMC1A-204ENST00000463684 USP21Q9UK80 565 aa22.08■■□□□ 1.13
SMC1A-204ENST00000463684 FOXD1Q16676 465 aa22.07■■□□□ 1.12
SMC1A-204ENST00000463684 C1orf167Q5SNV9 1468 aa22.07■■□□□ 1.12
SMC1A-204ENST00000463684 TRPC5Q9UL62 973 aaPredicted RBP22.06■■□□□ 1.12
SMC1A-204ENST00000463684 ATAD2Q6PL18 1390 aa22.06■■□□□ 1.12
SMC1A-204ENST00000463684 ORAI2Q96SN7 254 aa22.05■■□□□ 1.12
SMC1A-204ENST00000463684 VGFO15240 615 aaPredicted RBP22.04■■□□□ 1.12
SMC1A-204ENST00000463684 SOS2Q07890 1332 aaPredicted RBP22.04■■□□□ 1.12
SMC1A-204ENST00000463684 SPHKAPQ2M3C7 1700 aa22.03■■□□□ 1.12
SMC1A-204ENST00000463684 FNBP4Q8N3X1 1017 aaPredicted RBP22.01■■□□□ 1.11
SMC1A-204ENST00000463684 NEXMIFQ5QGS0 1516 aa22.01■■□□□ 1.11
SMC1A-204ENST00000463684 NALCNQ8IZF0 1738 aa22■■□□□ 1.11
SMC1A-204ENST00000463684 ZRANB1Q9UGI0 708 aa22■■□□□ 1.11
SMC1A-204ENST00000463684 PTCH1Q13635 1447 aa21.99■■□□□ 1.11
SMC1A-204ENST00000463684 ROBO2Q9HCK4 1378 aa21.98■■□□□ 1.11
SMC1A-204ENST00000463684 SRCAPQ6ZRS2 3230 aa21.97■■□□□ 1.11
SMC1A-204ENST00000463684 CLTCL1P53675 1640 aa21.96■■□□□ 1.11
SMC1A-204ENST00000463684 ESCO1Q5FWF5 840 aa21.95■■□□□ 1.1
SMC1A-204ENST00000463684 CCDC125Q86Z20 511 aa21.95■■□□□ 1.1
SMC1A-204ENST00000463684 RPGRIP1LQ68CZ1 1315 aa21.95■■□□□ 1.1
SMC1A-204ENST00000463684 LAMC1P11047 1609 aa21.95■■□□□ 1.1
SMC1A-204ENST00000463684 PPARGC1BQ86YN6 1023 aaKnown RBP21.94■■□□□ 1.1
SMC1A-204ENST00000463684 NPHP3Q7Z494 1330 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms