RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 RIMS2Q9UQ26 1411 aa28.97■■■□□ 2.23
COL9A3-204ENST00000463487 NPHP4O75161 1426 aaPredicted RBP28.96■■■□□ 2.23
COL9A3-204ENST00000463487 ANKRD30BQ9BXX2 1392 aa28.96■■■□□ 2.23
COL9A3-204ENST00000463487 NEURL4Q96JN8 1562 aa28.96■■■□□ 2.23
COL9A3-204ENST00000463487 ZFYVE9O95405 1425 aa28.94■■■□□ 2.22
COL9A3-204ENST00000463487 LTKP29376 864 aa28.93■■■□□ 2.22
COL9A3-204ENST00000463487 IQGAP1P46940 1657 aa28.93■■■□□ 2.22
COL9A3-204ENST00000463487 RPGRIP1LQ68CZ1 1315 aa28.91■■■□□ 2.22
COL9A3-204ENST00000463487 BCANQ96GW7 911 aa28.88■■■□□ 2.21
COL9A3-204ENST00000463487 DHX57Q6P158 1386 aaKnown RBP28.86■■■□□ 2.21
COL9A3-204ENST00000463487 PLEKHG1Q9ULL1 1385 aa28.86■■■□□ 2.21
COL9A3-204ENST00000463487 SPATA31E1Q6ZUB1 1445 aa28.85■■■□□ 2.21
COL9A3-204ENST00000463487 NEXMIFQ5QGS0 1516 aa28.84■■■□□ 2.21
COL9A3-204ENST00000463487 VGFO15240 615 aaPredicted RBP28.83■■■□□ 2.21
COL9A3-204ENST00000463487 RGL3Q3MIN7 710 aa28.83■■■□□ 2.21
COL9A3-204ENST00000463487 NUTM2DQ5VT03 806 aaPredicted RBP28.81■■■□□ 2.2
COL9A3-204ENST00000463487 PPLO60437 1756 aa28.78■■■□□ 2.2
COL9A3-204ENST00000463487 DIP2AQ14689 1571 aa28.75■■■□□ 2.19
COL9A3-204ENST00000463487 SLC26A8Q96RN1 970 aa28.73■■■□□ 2.19
COL9A3-204ENST00000463487 SETBP1Q9Y6X0 1596 aa28.72■■■□□ 2.19
COL9A3-204ENST00000463487 ZNF335Q9H4Z2 1342 aaPredicted RBP28.71■■■□□ 2.19
COL9A3-204ENST00000463487 STAC3Q96MF2 364 aa28.71■■■□□ 2.19
COL9A3-204ENST00000463487 IFT172Q9UG01 1749 aa28.71■■■□□ 2.19
COL9A3-204ENST00000463487 TBX22Q9Y458 520 aa28.7■■■□□ 2.18
COL9A3-204ENST00000463487 SENP3Q9H4L4 574 aaPredicted RBP28.69■■■□□ 2.18
COL9A3-204ENST00000463487 MYOM2P54296 1465 aa28.67■■■□□ 2.18
COL9A3-204ENST00000463487 ADAMTS13Q76LX8 1427 aa28.67■■■□□ 2.18
COL9A3-204ENST00000463487 CPS1P31327 1500 aa28.66■■■□□ 2.18
COL9A3-204ENST00000463487 PIK3R4Q99570 1358 aa28.65■■■□□ 2.18
COL9A3-204ENST00000463487 LTBP4Q8N2S1 1624 aa28.63■■■□□ 2.17
COL9A3-204ENST00000463487 NRXN3Q9Y4C0 1643 aa28.63■■■□□ 2.17
COL9A3-204ENST00000463487 NEUROD1Q13562 356 aa28.63■■■□□ 2.17
COL9A3-204ENST00000463487 DCAF11Q8TEB1 546 aa28.63■■■□□ 2.17
COL9A3-204ENST00000463487 ADGRF5Q8IZF2 1346 aa28.62■■■□□ 2.17
COL9A3-204ENST00000463487 KCNA6P17658 529 aa28.61■■■□□ 2.17
COL9A3-204ENST00000463487 SIN3AQ96ST3 1273 aa28.61■■■□□ 2.17
COL9A3-204ENST00000463487 CLSPNQ9HAW4 1339 aa28.6■■■□□ 2.17
COL9A3-204ENST00000463487 PIK3C2GO75747 1445 aa28.59■■■□□ 2.17
COL9A3-204ENST00000463487 ALKQ9UM73 1620 aa28.58■■■□□ 2.17
COL9A3-204ENST00000463487 CERKQ8TCT0 537 aa28.57■■■□□ 2.16
COL9A3-204ENST00000463487 KDM2AQ9Y2K7 1162 aa28.57■■■□□ 2.16
COL9A3-204ENST00000463487 NRXN1Q9ULB1 1477 aa28.57■■■□□ 2.16
COL9A3-204ENST00000463487 NWD1Q149M9 1564 aa28.57■■■□□ 2.16
COL9A3-204ENST00000463487 NKTRP30414 1462 aaKnown RBP28.56■■■□□ 2.16
COL9A3-204ENST00000463487 CHD2O14647 1828 aaKnown RBP28.55■■■□□ 2.16
COL9A3-204ENST00000463487 LAMC1P11047 1609 aa28.55■■■□□ 2.16
COL9A3-204ENST00000463487 CCER1Q8TC90 406 aaPredicted RBP28.55■■■□□ 2.16
COL9A3-204ENST00000463487 IQSEC2Q5JU85 1478 aa28.54■■■□□ 2.16
COL9A3-204ENST00000463487 TONSLQ96HA7 1378 aa28.52■■■□□ 2.16
COL9A3-204ENST00000463487 STRCP1A6NGW2 1772 aa28.52■■■□□ 2.16
COL9A3-204ENST00000463487 METP08581 1390 aa28.51■■■□□ 2.16
COL9A3-204ENST00000463487 SETD1AO15047 1707 aaKnown RBP28.5■■■□□ 2.15
COL9A3-204ENST00000463487 AMOTL2Q9Y2J4 779 aa28.5■■■□□ 2.15
COL9A3-204ENST00000463487 L3MBTL2Q969R5 705 aa28.49■■■□□ 2.15
COL9A3-204ENST00000463487 PROSER2Q86WR7 435 aaPredicted RBP28.48■■■□□ 2.15
COL9A3-204ENST00000463487 C14orf93Q9H972 538 aaKnown RBP28.48■■■□□ 2.15
COL9A3-204ENST00000463487 LRRC7Q96NW7 1537 aa28.48■■■□□ 2.15
COL9A3-204ENST00000463487 XRN1Q8IZH2 1706 aaKnown RBP28.45■■■□□ 2.14
COL9A3-204ENST00000463487 PTPRUQ92729 1446 aa28.44■■■□□ 2.14
COL9A3-204ENST00000463487 CFAP70Q5T0N1 1121 aa28.43■■■□□ 2.14
COL9A3-204ENST00000463487 PRAG1Q86YV5 1406 aa28.42■■■□□ 2.14
COL9A3-204ENST00000463487 TMEM94Q12767 1356 aa28.41■■■□□ 2.14
COL9A3-204ENST00000463487 NCOA3Q9Y6Q9 1424 aa28.4■■■□□ 2.14
COL9A3-204ENST00000463487 LRPPRCP42704 1394 aaKnown RBP28.39■■■□□ 2.14
COL9A3-204ENST00000463487 PTCH1Q13635 1447 aa28.39■■■□□ 2.14
COL9A3-204ENST00000463487 KIAA1210Q9ULL0 1709 aa28.38■■■□□ 2.13
COL9A3-204ENST00000463487 TMEM132EQ6IEE7 984 aa28.37■■■□□ 2.13
COL9A3-204ENST00000463487 C14orf37Q86TY3 774 aa28.37■■■□□ 2.13
COL9A3-204ENST00000463487 TIMELESSQ9UNS1 1208 aa28.37■■■□□ 2.13
COL9A3-204ENST00000463487 YTHDC2Q9H6S0 1430 aaKnown RBP28.36■■■□□ 2.13
COL9A3-204ENST00000463487 ASXL1Q8IXJ9 1541 aa28.36■■■□□ 2.13
COL9A3-204ENST00000463487 ABCC11Q96J66 1382 aa28.36■■■□□ 2.13
COL9A3-204ENST00000463487 STK26Q9P289 416 aa28.35■■■□□ 2.13
COL9A3-204ENST00000463487 MSH6P52701 1360 aa28.35■■■□□ 2.13
COL9A3-204ENST00000463487 KNDC1Q76NI1 1749 aa28.34■■■□□ 2.13
COL9A3-204ENST00000463487 TECPR2O15040 1411 aa28.34■■■□□ 2.13
COL9A3-204ENST00000463487 TOM1O60784 492 aa28.32■■■□□ 2.12
COL9A3-204ENST00000463487 XIRP1Q702N8 1843 aaKnown RBP28.32■■■□□ 2.12
COL9A3-204ENST00000463487 ADGRB1O14514 1584 aa28.31■■■□□ 2.12
COL9A3-204ENST00000463487 ROBO2Q9HCK4 1378 aa28.3■■■□□ 2.12
COL9A3-204ENST00000463487 RBM33Q96EV2 1170 aaKnown RBP28.3■■■□□ 2.12
COL9A3-204ENST00000463487 UBAP1LF5GYI3 381 aa28.29■■■□□ 2.12
COL9A3-204ENST00000463487 FBXO41Q8TF61 875 aa28.29■■■□□ 2.12
COL9A3-204ENST00000463487 C19orf44Q9H6X5 657 aa28.28■■■□□ 2.12
COL9A3-204ENST00000463487 FAM135BQ49AJ0 1406 aa28.27■■■□□ 2.12
COL9A3-204ENST00000463487 SIRT1Q96EB6 747 aa28.27■■■□□ 2.12
COL9A3-204ENST00000463487 DLC1Q96QB1 1528 aa28.26■■■□□ 2.11
COL9A3-204ENST00000463487 TRPM1Q7Z4N2 1603 aa28.25■■■□□ 2.11
COL9A3-204ENST00000463487 ATF3P18847 181 aa28.24■■■□□ 2.11
COL9A3-204ENST00000463487 DCCP43146 1447 aa28.24■■■□□ 2.11
COL9A3-204ENST00000463487 ADGRL3Q9HAR2 1447 aa28.24■■■□□ 2.11
COL9A3-204ENST00000463487 ROCK2O75116 1388 aaKnown RBP28.24■■■□□ 2.11
COL9A3-204ENST00000463487 CADPS2Q86UW7 1296 aa28.23■■■□□ 2.11
COL9A3-204ENST00000463487 TRAK1Q9UPV9 953 aa28.23■■■□□ 2.11
COL9A3-204ENST00000463487 POGKQ9P215 609 aa28.22■■■□□ 2.11
COL9A3-204ENST00000463487 NBPF1Q3BBV0 1214 aa28.2■■■□□ 2.1
COL9A3-204ENST00000463487 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.18■■■□□ 2.1
COL9A3-204ENST00000463487 NBPF8Q3BBV2 869 aa28.18■■■□□ 2.1
COL9A3-204ENST00000463487 WAPLQ7Z5K2 1190 aa28.18■■■□□ 2.1
COL9A3-204ENST00000463487 PRAM1Q96QH2 718 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 204 ms