RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 RBM33Q96EV2 1170 aaKnown RBP24.78■■□□□ 1.56
COL7A1-204ENST00000462475 TMEM131LA2VDJ0 1609 aa24.78■■□□□ 1.56
COL7A1-204ENST00000462475 RIMS2Q9UQ26 1411 aa24.78■■□□□ 1.56
COL7A1-204ENST00000462475 NKTRP30414 1462 aaKnown RBP24.77■■□□□ 1.56
COL7A1-204ENST00000462475 BCANQ96GW7 911 aa24.77■■□□□ 1.56
COL7A1-204ENST00000462475 PLEKHG1Q9ULL1 1385 aa24.77■■□□□ 1.56
COL7A1-204ENST00000462475 MYO5BQ9ULV0 1848 aa24.77■■□□□ 1.56
COL7A1-204ENST00000462475 E9PCH4 1651 aa24.76■■□□□ 1.55
COL7A1-204ENST00000462475 PROSER2Q86WR7 435 aaPredicted RBP24.76■■□□□ 1.55
COL7A1-204ENST00000462475 PHF23Q9BUL5 403 aaPredicted RBP24.76■■□□□ 1.55
COL7A1-204ENST00000462475 IQGAP3Q86VI3 1631 aa24.75■■□□□ 1.55
COL7A1-204ENST00000462475 ITGAEP38570 1179 aa24.74■■□□□ 1.55
COL7A1-204ENST00000462475 PPARGC1BQ86YN6 1023 aaKnown RBP24.74■■□□□ 1.55
COL7A1-204ENST00000462475 FAM135BQ49AJ0 1406 aa24.74■■□□□ 1.55
COL7A1-204ENST00000462475 PPP1R15AO75807 674 aaPredicted RBP24.73■■□□□ 1.55
COL7A1-204ENST00000462475 CHGAP10645 457 aaKnown RBP24.71■■□□□ 1.55
COL7A1-204ENST00000462475 NUP155O75694 1391 aa24.7■■□□□ 1.55
COL7A1-204ENST00000462475 HDGFP51858 240 aaKnown RBP24.68■■□□□ 1.54
COL7A1-204ENST00000462475 ROBO1Q9Y6N7 1651 aa24.68■■□□□ 1.54
COL7A1-204ENST00000462475 NUTM2DQ5VT03 806 aaPredicted RBP24.67■■□□□ 1.54
COL7A1-204ENST00000462475 MSH6P52701 1360 aa24.67■■□□□ 1.54
COL7A1-204ENST00000462475 ADAMTS13Q76LX8 1427 aa24.66■■□□□ 1.54
COL7A1-204ENST00000462475 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.65■■□□□ 1.54
COL7A1-204ENST00000462475 CHD2O14647 1828 aaKnown RBP24.65■■□□□ 1.54
COL7A1-204ENST00000462475 TBX22Q9Y458 520 aa24.64■■□□□ 1.54
COL7A1-204ENST00000462475 DIP2AQ14689 1571 aa24.6■■□□□ 1.53
COL7A1-204ENST00000462475 RGS17Q9UGC6 210 aaPredicted RBP24.6■■□□□ 1.53
COL7A1-204ENST00000462475 SLAIN2Q9P270 581 aa24.58■■□□□ 1.53
COL7A1-204ENST00000462475 PIK3R4Q99570 1358 aa24.55■■□□□ 1.52
COL7A1-204ENST00000462475 NCOA3Q9Y6Q9 1424 aa24.55■■□□□ 1.52
COL7A1-204ENST00000462475 SPHKAPQ2M3C7 1700 aa24.55■■□□□ 1.52
COL7A1-204ENST00000462475 RRBP1Q9P2E9 1410 aaKnown RBP24.54■■□□□ 1.52
COL7A1-204ENST00000462475 TRPM2O94759 1503 aa24.54■■□□□ 1.52
COL7A1-204ENST00000462475 PTPRUQ92729 1446 aa24.53■■□□□ 1.52
COL7A1-204ENST00000462475 C14orf37Q86TY3 774 aa24.52■■□□□ 1.52
COL7A1-204ENST00000462475 PHLPP1O60346 1717 aa24.51■■□□□ 1.51
COL7A1-204ENST00000462475 NRXN3Q9Y4C0 1643 aa24.5■■□□□ 1.51
COL7A1-204ENST00000462475 AMOTL2Q9Y2J4 779 aa24.49■■□□□ 1.51
COL7A1-204ENST00000462475 NAIPQ13075 1403 aa24.49■■□□□ 1.51
COL7A1-204ENST00000462475 SETBP1Q9Y6X0 1596 aa24.49■■□□□ 1.51
COL7A1-204ENST00000462475 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.48■■□□□ 1.51
COL7A1-204ENST00000462475 COL16A1Q07092 1604 aaPredicted RBP24.47■■□□□ 1.51
COL7A1-204ENST00000462475 JCADQ9P266 1359 aa24.47■■□□□ 1.51
COL7A1-204ENST00000462475 C19orf44Q9H6X5 657 aa24.47■■□□□ 1.51
COL7A1-204ENST00000462475 CLTCL1P53675 1640 aa24.46■■□□□ 1.51
COL7A1-204ENST00000462475 ZNF326Q5BKZ1 582 aaKnown RBP24.46■■□□□ 1.51
COL7A1-204ENST00000462475 XRN1Q8IZH2 1706 aaKnown RBP24.45■■□□□ 1.5
COL7A1-204ENST00000462475 POTEAQ6S8J7 498 aa24.45■■□□□ 1.5
COL7A1-204ENST00000462475 CADPS2Q86UW7 1296 aa24.45■■□□□ 1.5
COL7A1-204ENST00000462475 ATF3P18847 181 aa24.44■■□□□ 1.5
COL7A1-204ENST00000462475 NEXMIFQ5QGS0 1516 aa24.42■■□□□ 1.5
COL7A1-204ENST00000462475 AHDC1Q5TGY3 1603 aaPredicted RBP24.42■■□□□ 1.5
COL7A1-204ENST00000462475 METP08581 1390 aa24.42■■□□□ 1.5
COL7A1-204ENST00000462475 DCCP43146 1447 aa24.39■■□□□ 1.5
COL7A1-204ENST00000462475 HFM1A2PYH4 1435 aa24.38■■□□□ 1.49
COL7A1-204ENST00000462475 LRP6O75581 1613 aa24.38■■□□□ 1.49
COL7A1-204ENST00000462475 BRINP3Q76B58 766 aa24.37■■□□□ 1.49
COL7A1-204ENST00000462475 TRIM52Q96A61 297 aa24.34■■□□□ 1.49
COL7A1-204ENST00000462475 MST1RQ04912 1400 aa24.34■■□□□ 1.49
COL7A1-204ENST00000462475 SPATA31A6Q5VVP1 1343 aa24.34■■□□□ 1.49
COL7A1-204ENST00000462475 ASXL1Q8IXJ9 1541 aa24.33■■□□□ 1.49
COL7A1-204ENST00000462475 KIF1BO60333 1816 aa24.32■■□□□ 1.48
COL7A1-204ENST00000462475 ADGRL3Q9HAR2 1447 aa24.32■■□□□ 1.48
COL7A1-204ENST00000462475 SHPRHQ149N8 1683 aa24.31■■□□□ 1.48
COL7A1-204ENST00000462475 NALCNQ8IZF0 1738 aa24.28■■□□□ 1.48
COL7A1-204ENST00000462475 SLC4A1APQ9BWU0 796 aaKnown RBP24.28■■□□□ 1.48
COL7A1-204ENST00000462475 MEX3CQ5U5Q3 659 aaKnown RBP24.27■■□□□ 1.48
COL7A1-204ENST00000462475 SETD1AO15047 1707 aaKnown RBP24.26■■□□□ 1.47
COL7A1-204ENST00000462475 PTCH1Q13635 1447 aa24.25■■□□□ 1.47
COL7A1-204ENST00000462475 NHSL1Q5SYE7 1610 aa24.24■■□□□ 1.47
COL7A1-204ENST00000462475 VGFO15240 615 aaPredicted RBP24.24■■□□□ 1.47
COL7A1-204ENST00000462475 SETD5Q9C0A6 1442 aa24.24■■□□□ 1.47
COL7A1-204ENST00000462475 ROBO2Q9HCK4 1378 aa24.23■■□□□ 1.47
COL7A1-204ENST00000462475 RPGRIP1LQ68CZ1 1315 aa24.21■■□□□ 1.47
COL7A1-204ENST00000462475 FOXD1Q16676 465 aa24.21■■□□□ 1.47
COL7A1-204ENST00000462475 DDX17Q92841 729 aaKnown RBP24.21■■□□□ 1.47
COL7A1-204ENST00000462475 NUTM2BA6NNL0 878 aaPredicted RBP24.2■■□□□ 1.46
COL7A1-204ENST00000462475 NUTM2EB1AL46 878 aaPredicted RBP24.2■■□□□ 1.46
COL7A1-204ENST00000462475 NUTM2AQ8IVF1 878 aaPredicted RBP24.2■■□□□ 1.46
COL7A1-204ENST00000462475 PRAG1Q86YV5 1406 aa24.19■■□□□ 1.46
COL7A1-204ENST00000462475 ZNF772Q68DY9 489 aaPredicted RBP24.19■■□□□ 1.46
COL7A1-204ENST00000462475 C1orf167Q5SNV9 1468 aa24.19■■□□□ 1.46
COL7A1-204ENST00000462475 PPLO60437 1756 aa24.19■■□□□ 1.46
COL7A1-204ENST00000462475 LRRC59Q96AG4 307 aaKnown RBP24.15■■□□□ 1.46
COL7A1-204ENST00000462475 PNPLA6Q8IY17 1366 aa24.15■■□□□ 1.46
COL7A1-204ENST00000462475 CCDC144AA2RUR9 1427 aa24.13■■□□□ 1.45
COL7A1-204ENST00000462475 SPATA31E1Q6ZUB1 1445 aa24.11■■□□□ 1.45
COL7A1-204ENST00000462475 ORAI2Q96SN7 254 aa24.11■■□□□ 1.45
COL7A1-204ENST00000462475 AFF2P51816 1311 aa24.1■■□□□ 1.45
COL7A1-204ENST00000462475 ADGRF5Q8IZF2 1346 aa24.1■■□□□ 1.45
COL7A1-204ENST00000462475 LAMC1P11047 1609 aa24.1■■□□□ 1.45
COL7A1-204ENST00000462475 RGL3Q3MIN7 710 aa24.08■■□□□ 1.45
COL7A1-204ENST00000462475 MPHOSPH9Q99550 1183 aa24.08■■□□□ 1.45
COL7A1-204ENST00000462475 RXRBP28702 533 aa24.07■■□□□ 1.44
COL7A1-204ENST00000462475 C8orf37Q96NL8 207 aa24.07■■□□□ 1.44
COL7A1-204ENST00000462475 SOS2Q07890 1332 aaPredicted RBP24.06■■□□□ 1.44
COL7A1-204ENST00000462475 CDC42BPGQ6DT37 1551 aa24.05■■□□□ 1.44
COL7A1-204ENST00000462475 IFT172Q9UG01 1749 aa24.04■■□□□ 1.44
COL7A1-204ENST00000462475 ANKRD30BQ9BXX2 1392 aa24.03■■□□□ 1.44
COL7A1-204ENST00000462475 TECPR2O15040 1411 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 244.5 ms