RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 BEGAINQ9BUH8 593 aa8.77□□□□□ -1.01
VPS41-210ENST00000462429 SLC4A3P48751 1232 aa8.76□□□□□ -1.01
VPS41-210ENST00000462429 ADGRD1Q6QNK2 874 aa8.76□□□□□ -1.01
VPS41-210ENST00000462429 GTF3C3Q9Y5Q9 886 aa8.76□□□□□ -1.01
VPS41-210ENST00000462429 DDX11L8A8MPP1 907 aa8.75□□□□□ -1.01
VPS41-210ENST00000462429 RSPH4AQ5TD94 716 aa8.75□□□□□ -1.01
VPS41-210ENST00000462429 MRPL50Q8N5N7 158 aaKnown RBP8.75□□□□□ -1.01
VPS41-210ENST00000462429 BHMG1C9JSJ3 638 aaPredicted RBP8.74□□□□□ -1.01
VPS41-210ENST00000462429 STAC3Q96MF2 364 aa8.74□□□□□ -1.01
VPS41-210ENST00000462429 RSPH6AQ9H0K4 717 aa8.74□□□□□ -1.01
VPS41-210ENST00000462429 CD46P15529 392 aa8.73□□□□□ -1.01
VPS41-210ENST00000462429 SWT1Q5T5J6 900 aaKnown RBP8.73□□□□□ -1.01
VPS41-210ENST00000462429 ANKRD13DQ6ZTN6 518 aa8.73□□□□□ -1.01
VPS41-210ENST00000462429 GOPCQ9HD26 462 aa8.73□□□□□ -1.01
VPS41-210ENST00000462429 DIXDC1Q155Q3 683 aa8.72□□□□□ -1.01
VPS41-210ENST00000462429 SLF2Q8IX21 1173 aa8.72□□□□□ -1.01
VPS41-210ENST00000462429 RDH13Q8NBN7 331 aa8.72□□□□□ -1.01
VPS41-210ENST00000462429 SH3D19Q5HYK7 790 aa8.71□□□□□ -1.02
VPS41-210ENST00000462429 HRO43593 1189 aa8.7□□□□□ -1.02
VPS41-210ENST00000462429 ZFRQ96KR1 1074 aaKnown RBP8.7□□□□□ -1.02
VPS41-210ENST00000462429 PCMTD1Q96MG8 357 aaPredicted RBP8.7□□□□□ -1.02
VPS41-210ENST00000462429 GOLGA8CPA6NN73 597 aa8.69□□□□□ -1.02
VPS41-210ENST00000462429 SAMD7Q7Z3H4 446 aa8.69□□□□□ -1.02
VPS41-210ENST00000462429 NUTM1Q86Y26 1132 aa8.69□□□□□ -1.02
VPS41-210ENST00000462429 NECTIN2Q92692 538 aa8.68□□□□□ -1.02
VPS41-210ENST00000462429 TBC1D2Q9BYX2 928 aa8.68□□□□□ -1.02
VPS41-210ENST00000462429 RNF40O75150 1001 aa8.67□□□□□ -1.02
VPS41-210ENST00000462429 SKIV2LQ15477 1246 aaKnown RBP8.67□□□□□ -1.02
VPS41-210ENST00000462429 ANKK1Q8NFD2 765 aa8.67□□□□□ -1.02
VPS41-210ENST00000462429 LRCH3Q96II8 777 aa8.67□□□□□ -1.02
VPS41-210ENST00000462429 MYSM1Q5VVJ2 828 aa8.66□□□□□ -1.02
VPS41-210ENST00000462429 POTEGQ6S5H5 508 aa8.66□□□□□ -1.02
VPS41-210ENST00000462429 SPIRE2Q8WWL2 714 aa8.66□□□□□ -1.02
VPS41-210ENST00000462429 KRTAP3-3Q9BYR6 98 aa8.66□□□□□ -1.02
VPS41-210ENST00000462429 KRTAP3-2Q9BYR7 98 aa8.66□□□□□ -1.02
VPS41-210ENST00000462429 SLC10A3P09131 477 aa8.65□□□□□ -1.02
VPS41-210ENST00000462429 GCGRP47871 477 aa8.65□□□□□ -1.02
VPS41-210ENST00000462429 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.65□□□□□ -1.02
VPS41-210ENST00000462429 ATP1B4Q9UN42 357 aaPredicted RBP8.65□□□□□ -1.02
VPS41-210ENST00000462429 POTEMA6NI47 508 aa8.64□□□□□ -1.03
VPS41-210ENST00000462429 KDM4AO75164 1064 aa8.64□□□□□ -1.03
VPS41-210ENST00000462429 USP46P62068 366 aa8.64□□□□□ -1.03
VPS41-210ENST00000462429 ERICH6Q7L0X2 663 aa8.64□□□□□ -1.03
VPS41-210ENST00000462429 POLR3EQ9NVU0 708 aa8.64□□□□□ -1.03
VPS41-210ENST00000462429 CLK2P49760 499 aaKnown RBP8.63□□□□□ -1.03
VPS41-210ENST00000462429 CFHP08603 1231 aa8.62□□□□□ -1.03
VPS41-210ENST00000462429 KMT5BQ4FZB7 885 aa8.62□□□□□ -1.03
VPS41-210ENST00000462429 CDAN1Q8IWY9 1227 aa8.62□□□□□ -1.03
VPS41-210ENST00000462429 SOWAHBA6NEL2 793 aa8.61□□□□□ -1.03
VPS41-210ENST00000462429 GRIPAP1Q4V328 841 aa8.61□□□□□ -1.03
VPS41-210ENST00000462429 RIC3Q7Z5B4 369 aa8.61□□□□□ -1.03
VPS41-210ENST00000462429 WNT2BQ93097 391 aa8.61□□□□□ -1.03
VPS41-210ENST00000462429 GJA5P36382 358 aa8.6□□□□□ -1.03
VPS41-210ENST00000462429 PRR14Q9BWN1 585 aa8.6□□□□□ -1.03
VPS41-210ENST00000462429 MOXD2PA6NHM9 499 aa8.59□□□□□ -1.03
VPS41-210ENST00000462429 SPTLC1O15269 473 aa8.59□□□□□ -1.03
VPS41-210ENST00000462429 PPP4CP60510 307 aa8.59□□□□□ -1.03
VPS41-210ENST00000462429 TUSC1Q2TAM9 212 aa8.59□□□□□ -1.03
VPS41-210ENST00000462429 RSBN1LQ6PCB5 846 aaPredicted RBP8.59□□□□□ -1.03
VPS41-210ENST00000462429 PROCA1Q8NCQ7 364 aaPredicted RBP8.59□□□□□ -1.03
VPS41-210ENST00000462429 HOXA2O43364 376 aa8.58□□□□□ -1.04
VPS41-210ENST00000462429 BCAMP50895 628 aa8.58□□□□□ -1.04
VPS41-210ENST00000462429 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.58□□□□□ -1.04
VPS41-210ENST00000462429 LIMD1Q9UGP4 676 aa8.58□□□□□ -1.04
VPS41-210ENST00000462429 TSR3Q9UJK0 312 aaKnown RBP8.58□□□□□ -1.04
VPS41-210ENST00000462429 HPS5Q9UPZ3 1129 aa8.58□□□□□ -1.04
VPS41-210ENST00000462429 NDUFV2P19404 249 aa8.57□□□□□ -1.04
VPS41-210ENST00000462429 FUT2Q10981 343 aa8.57□□□□□ -1.04
VPS41-210ENST00000462429 ACTN4O43707 911 aaKnown RBP8.56□□□□□ -1.04
VPS41-210ENST00000462429 FDX1P10109 184 aa8.56□□□□□ -1.04
VPS41-210ENST00000462429 ATP6V1AP38606 617 aa8.56□□□□□ -1.04
VPS41-210ENST00000462429 CSPP1Q1MSJ5 1256 aa8.55□□□□□ -1.04
VPS41-210ENST00000462429 C14orf37Q86TY3 774 aa8.55□□□□□ -1.04
VPS41-210ENST00000462429 KCTD12Q96CX2 325 aaKnown RBP8.54□□□□□ -1.04
VPS41-210ENST00000462429 FLIIQ13045 1269 aa8.53□□□□□ -1.04
VPS41-210ENST00000462429 PRPF38BQ5VTL8 546 aaKnown RBP8.53□□□□□ -1.04
VPS41-210ENST00000462429 THSD4Q6ZMP0 1018 aa8.53□□□□□ -1.04
VPS41-210ENST00000462429 NUTM2BA6NNL0 878 aaPredicted RBP8.52□□□□□ -1.05
VPS41-210ENST00000462429 NUTM2EB1AL46 878 aaPredicted RBP8.52□□□□□ -1.05
VPS41-210ENST00000462429 NUTM2DQ5VT03 806 aaPredicted RBP8.52□□□□□ -1.05
VPS41-210ENST00000462429 PPP2R2DQ66LE6 453 aa8.52□□□□□ -1.05
VPS41-210ENST00000462429 NUTM2AQ8IVF1 878 aaPredicted RBP8.52□□□□□ -1.05
VPS41-210ENST00000462429 ZBTB3Q9H5J0 574 aa8.52□□□□□ -1.05
VPS41-210ENST00000462429 TIMELESSQ9UNS1 1208 aa8.52□□□□□ -1.05
VPS41-210ENST00000462429 PCDHB15Q9Y5E8 787 aa8.52□□□□□ -1.05
VPS41-210ENST00000462429 LILRB3O75022 631 aa8.51□□□□□ -1.05
VPS41-210ENST00000462429 RFC5P40937 340 aa8.51□□□□□ -1.05
VPS41-210ENST00000462429 GUCA2AQ02747 115 aa8.51□□□□□ -1.05
VPS41-210ENST00000462429 NYAP1Q6ZVC0 841 aa8.51□□□□□ -1.05
VPS41-210ENST00000462429 HLA-CQ95604 372 aa8.51□□□□□ -1.05
VPS41-210ENST00000462429 WBP1LQ9NX94 342 aa8.51□□□□□ -1.05
VPS41-210ENST00000462429 PCDH10Q9P2E7 1040 aa8.51□□□□□ -1.05
VPS41-210ENST00000462429 APLP1P51693 650 aa8.5□□□□□ -1.05
VPS41-210ENST00000462429 QPCTQ16769 361 aa8.5□□□□□ -1.05
VPS41-210ENST00000462429 TMEM259Q4ZIN3 620 aa8.5□□□□□ -1.05
VPS41-210ENST00000462429 MORN1Q5T089 497 aa8.5□□□□□ -1.05
VPS41-210ENST00000462429 PCDHGC3Q9UN70 934 aa8.5□□□□□ -1.05
VPS41-210ENST00000462429 SPDYE5A6NIY4 337 aa8.49□□□□□ -1.05
VPS41-210ENST00000462429 HRCP23327 699 aa8.49□□□□□ -1.05
VPS41-210ENST00000462429 MTMR2Q13614 643 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms