RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 NAIPQ13075 1403 aa28.7■■■□□ 2.19
VARS-220ENST00000461874 ALKQ9UM73 1620 aa28.7■■■□□ 2.19
VARS-220ENST00000461874 BCANQ96GW7 911 aa28.7■■■□□ 2.18
VARS-220ENST00000461874 DISP3Q9P2K9 1392 aa28.7■■■□□ 2.18
VARS-220ENST00000461874 HSPA1LP34931 641 aa28.69■■■□□ 2.18
VARS-220ENST00000461874 PLEKHG1Q9ULL1 1385 aa28.68■■■□□ 2.18
VARS-220ENST00000461874 PPP1R15AO75807 674 aaPredicted RBP28.68■■■□□ 2.18
VARS-220ENST00000461874 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.67■■■□□ 2.18
VARS-220ENST00000461874 MYO5BQ9ULV0 1848 aa28.65■■■□□ 2.18
VARS-220ENST00000461874 SENP3Q9H4L4 574 aaPredicted RBP28.64■■■□□ 2.18
VARS-220ENST00000461874 TMEM94Q12767 1356 aa28.62■■■□□ 2.17
VARS-220ENST00000461874 HFM1A2PYH4 1435 aa28.61■■■□□ 2.17
VARS-220ENST00000461874 NUTM2DQ5VT03 806 aaPredicted RBP28.6■■■□□ 2.17
VARS-220ENST00000461874 PROSER2Q86WR7 435 aaPredicted RBP28.6■■■□□ 2.17
VARS-220ENST00000461874 TBX22Q9Y458 520 aa28.59■■■□□ 2.17
VARS-220ENST00000461874 XIRP1Q702N8 1843 aaKnown RBP28.56■■■□□ 2.16
VARS-220ENST00000461874 NWD1Q149M9 1564 aa28.55■■■□□ 2.16
VARS-220ENST00000461874 NKTRP30414 1462 aaKnown RBP28.55■■■□□ 2.16
VARS-220ENST00000461874 TRIM52Q96A61 297 aa28.55■■■□□ 2.16
VARS-220ENST00000461874 RBM33Q96EV2 1170 aaKnown RBP28.55■■■□□ 2.16
VARS-220ENST00000461874 ADAMTS13Q76LX8 1427 aa28.53■■■□□ 2.16
VARS-220ENST00000461874 SPHKAPQ2M3C7 1700 aa28.53■■■□□ 2.16
VARS-220ENST00000461874 ILDR2Q71H61 639 aa28.51■■■□□ 2.15
VARS-220ENST00000461874 ZNF326Q5BKZ1 582 aaKnown RBP28.48■■■□□ 2.15
VARS-220ENST00000461874 SLC4A1APQ9BWU0 796 aaKnown RBP28.47■■■□□ 2.15
VARS-220ENST00000461874 TRPM2O94759 1503 aa28.47■■■□□ 2.15
VARS-220ENST00000461874 PIK3R4Q99570 1358 aa28.47■■■□□ 2.15
VARS-220ENST00000461874 CHD2O14647 1828 aaKnown RBP28.46■■■□□ 2.15
VARS-220ENST00000461874 DIP2AQ14689 1571 aa28.45■■■□□ 2.15
VARS-220ENST00000461874 FAM135BQ49AJ0 1406 aa28.45■■■□□ 2.15
VARS-220ENST00000461874 MSH6P52701 1360 aa28.44■■■□□ 2.14
VARS-220ENST00000461874 CLTCL1P53675 1640 aa28.43■■■□□ 2.14
VARS-220ENST00000461874 NCOA3Q9Y6Q9 1424 aa28.4■■■□□ 2.14
VARS-220ENST00000461874 AMOTL2Q9Y2J4 779 aa28.39■■■□□ 2.14
VARS-220ENST00000461874 PTPRUQ92729 1446 aa28.37■■■□□ 2.13
VARS-220ENST00000461874 SLAIN2Q9P270 581 aa28.37■■■□□ 2.13
VARS-220ENST00000461874 MED1Q15648 1581 aaPredicted RBP28.37■■■□□ 2.13
VARS-220ENST00000461874 SETBP1Q9Y6X0 1596 aa28.37■■■□□ 2.13
VARS-220ENST00000461874 NEXMIFQ5QGS0 1516 aa28.34■■■□□ 2.13
VARS-220ENST00000461874 NRXN3Q9Y4C0 1643 aa28.34■■■□□ 2.13
VARS-220ENST00000461874 C14orf37Q86TY3 774 aa28.33■■■□□ 2.13
VARS-220ENST00000461874 FOXD1Q16676 465 aa28.32■■■□□ 2.12
VARS-220ENST00000461874 C19orf44Q9H6X5 657 aa28.31■■■□□ 2.12
VARS-220ENST00000461874 METP08581 1390 aa28.31■■■□□ 2.12
VARS-220ENST00000461874 KIF1BO60333 1816 aa28.31■■■□□ 2.12
VARS-220ENST00000461874 MPHOSPH9Q99550 1183 aa28.3■■■□□ 2.12
VARS-220ENST00000461874 ROBO1Q9Y6N7 1651 aa28.29■■■□□ 2.12
VARS-220ENST00000461874 RPGRIP1LQ68CZ1 1315 aa28.29■■■□□ 2.12
VARS-220ENST00000461874 SOCS7O14512 581 aa28.29■■■□□ 2.12
VARS-220ENST00000461874 VGFO15240 615 aaPredicted RBP28.29■■■□□ 2.12
VARS-220ENST00000461874 CADPS2Q86UW7 1296 aa28.27■■■□□ 2.12
VARS-220ENST00000461874 ATF3P18847 181 aa28.25■■■□□ 2.11
VARS-220ENST00000461874 ACIN1Q9UKV3 1341 aaKnown RBP28.24■■■□□ 2.11
VARS-220ENST00000461874 XRN1Q8IZH2 1706 aaKnown RBP28.23■■■□□ 2.11
VARS-220ENST00000461874 PHF23Q9BUL5 403 aaPredicted RBP28.23■■■□□ 2.11
VARS-220ENST00000461874 SETD5Q9C0A6 1442 aa28.23■■■□□ 2.11
VARS-220ENST00000461874 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.21■■■□□ 2.11
VARS-220ENST00000461874 CCDC144AA2RUR9 1427 aa28.2■■■□□ 2.11
VARS-220ENST00000461874 DCCP43146 1447 aa28.17■■■□□ 2.1
VARS-220ENST00000461874 RGL3Q3MIN7 710 aa28.14■■■□□ 2.1
VARS-220ENST00000461874 SPATA31E1Q6ZUB1 1445 aa28.14■■■□□ 2.1
VARS-220ENST00000461874 RAB3GAP2Q9H2M9 1393 aa28.11■■■□□ 2.09
VARS-220ENST00000461874 PPLO60437 1756 aa28.11■■■□□ 2.09
VARS-220ENST00000461874 PHLPP1O60346 1717 aa28.11■■■□□ 2.09
VARS-220ENST00000461874 ADGRL3Q9HAR2 1447 aa28.1■■■□□ 2.09
VARS-220ENST00000461874 BRINP3Q76B58 766 aa28.1■■■□□ 2.09
VARS-220ENST00000461874 ADGRF5Q8IZF2 1346 aa28.1■■■□□ 2.09
VARS-220ENST00000461874 JCADQ9P266 1359 aa28.1■■■□□ 2.09
VARS-220ENST00000461874 SETD1AO15047 1707 aaKnown RBP28.09■■■□□ 2.09
VARS-220ENST00000461874 PTCH1Q13635 1447 aa28.09■■■□□ 2.09
VARS-220ENST00000461874 RGS17Q9UGC6 210 aaPredicted RBP28.08■■■□□ 2.09
VARS-220ENST00000461874 ANKRD30BQ9BXX2 1392 aa28.08■■■□□ 2.09
VARS-220ENST00000461874 ROBO2Q9HCK4 1378 aa28.08■■■□□ 2.09
VARS-220ENST00000461874 MST1RQ04912 1400 aa28.07■■■□□ 2.08
VARS-220ENST00000461874 PRAG1Q86YV5 1406 aa28.06■■■□□ 2.08
VARS-220ENST00000461874 COL16A1Q07092 1604 aaPredicted RBP28.06■■■□□ 2.08
VARS-220ENST00000461874 AHDC1Q5TGY3 1603 aaPredicted RBP28.05■■■□□ 2.08
VARS-220ENST00000461874 ASXL1Q8IXJ9 1541 aa28■■■□□ 2.07
VARS-220ENST00000461874 NALCNQ8IZF0 1738 aa27.99■■■□□ 2.07
VARS-220ENST00000461874 HRCP23327 699 aa27.97■■■□□ 2.07
VARS-220ENST00000461874 SPATA31A6Q5VVP1 1343 aa27.96■■■□□ 2.07
VARS-220ENST00000461874 IFT172Q9UG01 1749 aa27.96■■■□□ 2.07
VARS-220ENST00000461874 PIK3C2GO75747 1445 aa27.96■■■□□ 2.07
VARS-220ENST00000461874 C1orf167Q5SNV9 1468 aa27.95■■■□□ 2.06
VARS-220ENST00000461874 STK26Q9P289 416 aa27.94■■■□□ 2.06
VARS-220ENST00000461874 LRPPRCP42704 1394 aaKnown RBP27.94■■■□□ 2.06
VARS-220ENST00000461874 TMEM132EQ6IEE7 984 aa27.93■■■□□ 2.06
VARS-220ENST00000461874 POTEAQ6S8J7 498 aa27.92■■■□□ 2.06
VARS-220ENST00000461874 TECPR2O15040 1411 aa27.92■■■□□ 2.06
VARS-220ENST00000461874 ABCC11Q96J66 1382 aa27.91■■■□□ 2.06
VARS-220ENST00000461874 DDX17Q92841 729 aaKnown RBP27.91■■■□□ 2.06
VARS-220ENST00000461874 C14orf93Q9H972 538 aaKnown RBP27.9■■■□□ 2.06
VARS-220ENST00000461874 LRRC59Q96AG4 307 aaKnown RBP27.89■■■□□ 2.06
VARS-220ENST00000461874 NRXN1Q9ULB1 1477 aa27.89■■■□□ 2.05
VARS-220ENST00000461874 LRP6O75581 1613 aa27.89■■■□□ 2.05
VARS-220ENST00000461874 WAPLQ7Z5K2 1190 aa27.88■■■□□ 2.05
VARS-220ENST00000461874 ORAI2Q96SN7 254 aa27.88■■■□□ 2.05
VARS-220ENST00000461874 NHSL1Q5SYE7 1610 aa27.88■■■□□ 2.05
VARS-220ENST00000461874 SHPRHQ149N8 1683 aa27.87■■■□□ 2.05
VARS-220ENST00000461874 MYOM2P54296 1465 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms