RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ZFYVE16Q7Z3T8 1539 aa8.02□□□□□ -1.13
VPS13D-202ENST00000460333 IQGAP3Q86VI3 1631 aa8.01□□□□□ -1.13
VPS13D-202ENST00000460333 WDR43Q15061 677 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS13D-202ENST00000460333 MLH3Q9UHC1 1453 aa8.01□□□□□ -1.13
VPS13D-202ENST00000460333 PRAG1Q86YV5 1406 aa8.01□□□□□ -1.13
VPS13D-202ENST00000460333 TCERG1O14776 1098 aaKnown RBP7.99□□□□□ -1.13
VPS13D-202ENST00000460333 NBPF1Q3BBV0 1214 aa7.99□□□□□ -1.13
VPS13D-202ENST00000460333 POGKQ9P215 609 aa7.99□□□□□ -1.13
VPS13D-202ENST00000460333 ATP10AO60312 1499 aa7.99□□□□□ -1.13
VPS13D-202ENST00000460333 MYBBP1AQ9BQG0 1328 aaKnown RBP7.99□□□□□ -1.13
VPS13D-202ENST00000460333 B4GALNT3Q6L9W6 998 aa7.99□□□□□ -1.13
VPS13D-202ENST00000460333 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.99□□□□□ -1.13
VPS13D-202ENST00000460333 NLRP13Q86W25 1043 aa7.99□□□□□ -1.13
VPS13D-202ENST00000460333 ARXQ96QS3 562 aa7.99□□□□□ -1.13
VPS13D-202ENST00000460333 PNNQ9H307 717 aaKnown RBP7.98□□□□□ -1.13
VPS13D-202ENST00000460333 A0A0G2JS52 829 aa7.98□□□□□ -1.13
VPS13D-202ENST00000460333 HECW2Q9P2P5 1572 aa7.97□□□□□ -1.13
VPS13D-202ENST00000460333 CDK11BP21127 795 aaKnown RBP7.97□□□□□ -1.13
VPS13D-202ENST00000460333 CC2D1BQ5T0F9 858 aaKnown RBP7.97□□□□□ -1.13
VPS13D-202ENST00000460333 PANK3Q9H999 370 aa7.97□□□□□ -1.13
VPS13D-202ENST00000460333 MAGI2Q86UL8 1455 aa7.97□□□□□ -1.13
VPS13D-202ENST00000460333 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS13D-202ENST00000460333 CENPJQ9HC77 1338 aaPredicted RBP7.96□□□□□ -1.13
VPS13D-202ENST00000460333 TET3O43151 1660 aa7.96□□□□□ -1.13
VPS13D-202ENST00000460333 TRPM2O94759 1503 aa7.96□□□□□ -1.14
VPS13D-202ENST00000460333 PTMSP20962 102 aa7.96□□□□□ -1.14
VPS13D-202ENST00000460333 C11orf95C9JLR9 678 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-202ENST00000460333 CFAP70Q5T0N1 1121 aa7.96□□□□□ -1.14
VPS13D-202ENST00000460333 CFAP53Q96M91 514 aa7.96□□□□□ -1.14
VPS13D-202ENST00000460333 SCAF11Q99590 1463 aaKnown RBP7.96□□□□□ -1.14
VPS13D-202ENST00000460333 INO80Q9ULG1 1556 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-202ENST00000460333 PTPRTO14522 1441 aa7.95□□□□□ -1.14
VPS13D-202ENST00000460333 SPATA31E1Q6ZUB1 1445 aa7.95□□□□□ -1.14
VPS13D-202ENST00000460333 GPRASP1Q5JY77 1395 aa7.95□□□□□ -1.14
VPS13D-202ENST00000460333 TRAK1Q9UPV9 953 aa7.95□□□□□ -1.14
VPS13D-202ENST00000460333 EVC2Q86UK5 1308 aa7.95□□□□□ -1.14
VPS13D-202ENST00000460333 BRD4O60885 1362 aaPredicted RBP7.95□□□□□ -1.14
VPS13D-202ENST00000460333 HSP90AA2PQ14568 343 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-202ENST00000460333 DNAJC5Q9H3Z4 198 aa7.94□□□□□ -1.14
VPS13D-202ENST00000460333 EID1Q9Y6B2 187 aa7.93□□□□□ -1.14
VPS13D-202ENST00000460333 SRPK2P78362 688 aaKnown RBP7.93□□□□□ -1.14
VPS13D-202ENST00000460333 PLA2R1Q13018 1463 aa7.93□□□□□ -1.14
VPS13D-202ENST00000460333 STK26Q9P289 416 aa7.93□□□□□ -1.14
VPS13D-202ENST00000460333 ZBED9Q6R2W3 1325 aa7.93□□□□□ -1.14
VPS13D-202ENST00000460333 MSNP26038 577 aaKnown RBP7.92□□□□□ -1.14
VPS13D-202ENST00000460333 PRDM15P57071 1507 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-202ENST00000460333 GLI2P10070 1586 aa7.92□□□□□ -1.14
VPS13D-202ENST00000460333 LMOD2Q6P5Q4 547 aa7.92□□□□□ -1.14
VPS13D-202ENST00000460333 HDGFL2Q7Z4V5 671 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-202ENST00000460333 MORC1Q86VD1 984 aa7.92□□□□□ -1.14
VPS13D-202ENST00000460333 SENP3Q9H4L4 574 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-202ENST00000460333 RIMBP3CA6NJZ7 1639 aa7.92□□□□□ -1.14
VPS13D-202ENST00000460333 RIMBP3BA6NNM3 1639 aa7.92□□□□□ -1.14
VPS13D-202ENST00000460333 RIMBP3Q9UFD9 1639 aa7.92□□□□□ -1.14
VPS13D-202ENST00000460333 PLEKHG5O94827 1062 aa7.92□□□□□ -1.14
VPS13D-202ENST00000460333 NUTM2DQ5VT03 806 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-202ENST00000460333 TERF2IPQ9NYB0 399 aa7.92□□□□□ -1.14
VPS13D-202ENST00000460333 NOS1P29475 1434 aa7.91□□□□□ -1.14
VPS13D-202ENST00000460333 PTMAP06454 111 aaKnown RBP7.91□□□□□ -1.14
VPS13D-202ENST00000460333 GSE1Q14687 1217 aa7.91□□□□□ -1.14
VPS13D-202ENST00000460333 KDM5CP41229 1560 aa7.91□□□□□ -1.14
VPS13D-202ENST00000460333 ADGRF5Q8IZF2 1346 aa7.91□□□□□ -1.14
VPS13D-202ENST00000460333 C14orf93Q9H972 538 aaKnown RBP7.91□□□□□ -1.14
VPS13D-202ENST00000460333 EFCAB6Q5THR3 1501 aa7.91□□□□□ -1.14
VPS13D-202ENST00000460333 LMTK2Q8IWU2 1503 aa7.91□□□□□ -1.14
VPS13D-202ENST00000460333 PDE3BQ13370 1112 aa7.91□□□□□ -1.14
VPS13D-202ENST00000460333 IDI1Q13907 227 aa7.9□□□□□ -1.14
VPS13D-202ENST00000460333 SPHKAPQ2M3C7 1700 aa7.9□□□□□ -1.14
VPS13D-202ENST00000460333 DNTTIP2Q5QJE6 756 aaKnown RBP7.9□□□□□ -1.14
VPS13D-202ENST00000460333 VSIG10Q8N0Z9 540 aa7.9□□□□□ -1.15
VPS13D-202ENST00000460333 NUDCQ9Y266 331 aa7.9□□□□□ -1.15
VPS13D-202ENST00000460333 NPATQ14207 1427 aa7.9□□□□□ -1.15
VPS13D-202ENST00000460333 ZBTB7CA1YPR0 619 aa7.9□□□□□ -1.15
VPS13D-202ENST00000460333 MYOM2P54296 1465 aa7.89□□□□□ -1.15
VPS13D-202ENST00000460333 CGNL1Q0VF96 1302 aa7.89□□□□□ -1.15
VPS13D-202ENST00000460333 SAFB2Q14151 953 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS13D-202ENST00000460333 PKNOX2Q96KN3 472 aa7.89□□□□□ -1.15
VPS13D-202ENST00000460333 SALL2Q9Y467 1007 aaPredicted RBP7.89□□□□□ -1.15
VPS13D-202ENST00000460333 KIF1BO60333 1816 aa7.89□□□□□ -1.15
VPS13D-202ENST00000460333 KIDINS220Q9ULH0 1771 aa7.89□□□□□ -1.15
VPS13D-202ENST00000460333 E9PCH4 1651 aa7.89□□□□□ -1.15
VPS13D-202ENST00000460333 COL17A1Q9UMD9 1497 aaPredicted RBP7.89□□□□□ -1.15
VPS13D-202ENST00000460333 GOLGA6L3A6NEY3 463 aa7.89□□□□□ -1.15
VPS13D-202ENST00000460333 TMEM132EQ6IEE7 984 aa7.88□□□□□ -1.15
VPS13D-202ENST00000460333 ARHGAP31Q2M1Z3 1444 aa7.88□□□□□ -1.15
VPS13D-202ENST00000460333 DEPDC5O75140 1603 aa7.88□□□□□ -1.15
VPS13D-202ENST00000460333 TESK2Q96S53 571 aa7.88□□□□□ -1.15
VPS13D-202ENST00000460333 YEATS2Q9ULM3 1422 aa7.88□□□□□ -1.15
VPS13D-202ENST00000460333 ABCC3O15438 1527 aa7.88□□□□□ -1.15
VPS13D-202ENST00000460333 DISP3Q9P2K9 1392 aa7.87□□□□□ -1.15
VPS13D-202ENST00000460333 NGEFQ8N5V2 710 aa7.87□□□□□ -1.15
VPS13D-202ENST00000460333 TRPM1Q7Z4N2 1603 aa7.87□□□□□ -1.15
VPS13D-202ENST00000460333 CHAF1AQ13111 956 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-202ENST00000460333 PUS7Q96PZ0 661 aaKnown RBP7.87□□□□□ -1.15
VPS13D-202ENST00000460333 LAMC1P11047 1609 aa7.87□□□□□ -1.15
VPS13D-202ENST00000460333 CLTCL1P53675 1640 aa7.86□□□□□ -1.15
VPS13D-202ENST00000460333 RNF17Q9BXT8 1623 aaKnown RBP7.86□□□□□ -1.15
VPS13D-202ENST00000460333 VWDEQ8N2E2 1590 aa7.86□□□□□ -1.15
VPS13D-202ENST00000460333 PNISRQ8TF01 805 aaKnown RBP7.86□□□□□ -1.15
VPS13D-202ENST00000460333 MS4A1P11836 297 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms