RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 SCAF11Q99590 1463 aaKnown RBP32.35■■■□□ 2.77
SSNA1-202ENST00000459860 SLIT1O75093 1534 aa32.33■■■□□ 2.77
SSNA1-202ENST00000459860 MYO5BQ9ULV0 1848 aa32.32■■■□□ 2.76
SSNA1-202ENST00000459860 TXNDC2Q86VQ3 553 aa32.31■■■□□ 2.76
SSNA1-202ENST00000459860 TRPM2O94759 1503 aa32.31■■■□□ 2.76
SSNA1-202ENST00000459860 STRCP1A6NGW2 1772 aa32.29■■■□□ 2.76
SSNA1-202ENST00000459860 TMEM131LA2VDJ0 1609 aa32.29■■■□□ 2.76
SSNA1-202ENST00000459860 TMEM2Q9UHN6 1383 aa32.27■■■□□ 2.76
SSNA1-202ENST00000459860 EID1Q9Y6B2 187 aa32.26■■■□□ 2.75
SSNA1-202ENST00000459860 CHGAP10645 457 aaKnown RBP32.25■■■□□ 2.75
SSNA1-202ENST00000459860 MPHOSPH9Q99550 1183 aa32.24■■■□□ 2.75
SSNA1-202ENST00000459860 CLTCL1P53675 1640 aa32.23■■■□□ 2.75
SSNA1-202ENST00000459860 KIF1BO60333 1816 aa32.22■■■□□ 2.75
SSNA1-202ENST00000459860 MED1Q15648 1581 aaPredicted RBP32.19■■■□□ 2.74
SSNA1-202ENST00000459860 HRCP23327 699 aa32.19■■■□□ 2.74
SSNA1-202ENST00000459860 HDGFP51858 240 aaKnown RBP32.15■■■□□ 2.74
SSNA1-202ENST00000459860 RIMS2Q9UQ26 1411 aa32.14■■■□□ 2.74
SSNA1-202ENST00000459860 FOXD1Q16676 465 aa32.13■■■□□ 2.73
SSNA1-202ENST00000459860 ZFYVE9O95405 1425 aa32.11■■■□□ 2.73
SSNA1-202ENST00000459860 PPP1R15AO75807 674 aaPredicted RBP32.11■■■□□ 2.73
SSNA1-202ENST00000459860 CCDC144AA2RUR9 1427 aa32.09■■■□□ 2.73
SSNA1-202ENST00000459860 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.09■■■□□ 2.73
SSNA1-202ENST00000459860 TRIM26Q12899 539 aaPredicted RBP32.08■■■□□ 2.73
SSNA1-202ENST00000459860 ZNF326Q5BKZ1 582 aaKnown RBP32.07■■■□□ 2.72
SSNA1-202ENST00000459860 SENP3Q9H4L4 574 aaPredicted RBP32.05■■■□□ 2.72
SSNA1-202ENST00000459860 KCNA6P17658 529 aa32.04■■■□□ 2.72
SSNA1-202ENST00000459860 SLC26A8Q96RN1 970 aa32.04■■■□□ 2.72
SSNA1-202ENST00000459860 BCANQ96GW7 911 aa32.03■■■□□ 2.72
SSNA1-202ENST00000459860 TMEM94Q12767 1356 aa32.02■■■□□ 2.72
SSNA1-202ENST00000459860 PLEKHG1Q9ULL1 1385 aa32.02■■■□□ 2.72
SSNA1-202ENST00000459860 NEXMIFQ5QGS0 1516 aa31.98■■■□□ 2.71
SSNA1-202ENST00000459860 XIRP1Q702N8 1843 aaKnown RBP31.97■■■□□ 2.71
SSNA1-202ENST00000459860 FAM135BQ49AJ0 1406 aa31.97■■■□□ 2.71
SSNA1-202ENST00000459860 NUTM2DQ5VT03 806 aaPredicted RBP31.96■■■□□ 2.71
SSNA1-202ENST00000459860 PHF23Q9BUL5 403 aaPredicted RBP31.94■■■□□ 2.7
SSNA1-202ENST00000459860 RBM33Q96EV2 1170 aaKnown RBP31.93■■■□□ 2.7
SSNA1-202ENST00000459860 DIP2AQ14689 1571 aa31.93■■■□□ 2.7
SSNA1-202ENST00000459860 PPLO60437 1756 aa31.92■■■□□ 2.7
SSNA1-202ENST00000459860 PROSER2Q86WR7 435 aaPredicted RBP31.92■■■□□ 2.7
SSNA1-202ENST00000459860 RPGRIP1LQ68CZ1 1315 aa31.9■■■□□ 2.7
SSNA1-202ENST00000459860 ANKRD30BQ9BXX2 1392 aa31.88■■■□□ 2.69
SSNA1-202ENST00000459860 NKTRP30414 1462 aaKnown RBP31.88■■■□□ 2.69
SSNA1-202ENST00000459860 NWD1Q149M9 1564 aa31.88■■■□□ 2.69
SSNA1-202ENST00000459860 SETBP1Q9Y6X0 1596 aa31.87■■■□□ 2.69
SSNA1-202ENST00000459860 SPATA31E1Q6ZUB1 1445 aa31.87■■■□□ 2.69
SSNA1-202ENST00000459860 RGS17Q9UGC6 210 aaPredicted RBP31.86■■■□□ 2.69
SSNA1-202ENST00000459860 IFT172Q9UG01 1749 aa31.85■■■□□ 2.69
SSNA1-202ENST00000459860 VGFO15240 615 aaPredicted RBP31.84■■■□□ 2.69
SSNA1-202ENST00000459860 NRXN3Q9Y4C0 1643 aa31.83■■■□□ 2.69
SSNA1-202ENST00000459860 RGL3Q3MIN7 710 aa31.83■■■□□ 2.69
SSNA1-202ENST00000459860 ADAMTS13Q76LX8 1427 aa31.83■■■□□ 2.69
SSNA1-202ENST00000459860 TBX22Q9Y458 520 aa31.82■■■□□ 2.68
SSNA1-202ENST00000459860 CHD2O14647 1828 aaKnown RBP31.82■■■□□ 2.68
SSNA1-202ENST00000459860 PIK3R4Q99570 1358 aa31.77■■■□□ 2.68
SSNA1-202ENST00000459860 MSH6P52701 1360 aa31.76■■■□□ 2.67
SSNA1-202ENST00000459860 SLAIN2Q9P270 581 aa31.74■■■□□ 2.67
SSNA1-202ENST00000459860 ROBO1Q9Y6N7 1651 aa31.73■■■□□ 2.67
SSNA1-202ENST00000459860 SETD1AO15047 1707 aaKnown RBP31.69■■■□□ 2.66
SSNA1-202ENST00000459860 NCOA3Q9Y6Q9 1424 aa31.68■■■□□ 2.66
SSNA1-202ENST00000459860 MYOM2P54296 1465 aa31.67■■■□□ 2.66
SSNA1-202ENST00000459860 ADGRF5Q8IZF2 1346 aa31.65■■■□□ 2.66
SSNA1-202ENST00000459860 XRN1Q8IZH2 1706 aaKnown RBP31.64■■■□□ 2.66
SSNA1-202ENST00000459860 DHX57Q6P158 1386 aaKnown RBP31.64■■■□□ 2.66
SSNA1-202ENST00000459860 POTEAQ6S8J7 498 aa31.63■■■□□ 2.65
SSNA1-202ENST00000459860 METP08581 1390 aa31.62■■■□□ 2.65
SSNA1-202ENST00000459860 LAMC1P11047 1609 aa31.61■■■□□ 2.65
SSNA1-202ENST00000459860 PIK3C2GO75747 1445 aa31.61■■■□□ 2.65
SSNA1-202ENST00000459860 AMOTL2Q9Y2J4 779 aa31.61■■■□□ 2.65
SSNA1-202ENST00000459860 PTPRUQ92729 1446 aa31.6■■■□□ 2.65
SSNA1-202ENST00000459860 PCGF6Q9BYE7 350 aa31.58■■■□□ 2.65
SSNA1-202ENST00000459860 NRXN1Q9ULB1 1477 aa31.58■■■□□ 2.65
SSNA1-202ENST00000459860 C19orf44Q9H6X5 657 aa31.57■■■□□ 2.64
SSNA1-202ENST00000459860 JCADQ9P266 1359 aa31.56■■■□□ 2.64
SSNA1-202ENST00000459860 DCAF11Q8TEB1 546 aa31.55■■■□□ 2.64
SSNA1-202ENST00000459860 STAC3Q96MF2 364 aa31.55■■■□□ 2.64
SSNA1-202ENST00000459860 C14orf37Q86TY3 774 aa31.54■■■□□ 2.64
SSNA1-202ENST00000459860 CADPS2Q86UW7 1296 aa31.53■■■□□ 2.64
SSNA1-202ENST00000459860 KDM2AQ9Y2K7 1162 aa31.51■■■□□ 2.63
SSNA1-202ENST00000459860 COL16A1Q07092 1604 aaPredicted RBP31.49■■■□□ 2.63
SSNA1-202ENST00000459860 PHLPP1O60346 1717 aa31.49■■■□□ 2.63
SSNA1-202ENST00000459860 ATF3P18847 181 aa31.49■■■□□ 2.63
SSNA1-202ENST00000459860 PTCH1Q13635 1447 aa31.48■■■□□ 2.63
SSNA1-202ENST00000459860 ASXL1Q8IXJ9 1541 aa31.46■■■□□ 2.63
SSNA1-202ENST00000459860 PRAG1Q86YV5 1406 aa31.46■■■□□ 2.63
SSNA1-202ENST00000459860 KNDC1Q76NI1 1749 aa31.46■■■□□ 2.63
SSNA1-202ENST00000459860 C14orf93Q9H972 538 aaKnown RBP31.45■■■□□ 2.63
SSNA1-202ENST00000459860 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.45■■■□□ 2.63
SSNA1-202ENST00000459860 NEUROD1Q13562 356 aa31.44■■■□□ 2.62
SSNA1-202ENST00000459860 SIN3AQ96ST3 1273 aa31.44■■■□□ 2.62
SSNA1-202ENST00000459860 AHDC1Q5TGY3 1603 aaPredicted RBP31.42■■■□□ 2.62
SSNA1-202ENST00000459860 CFAP70Q5T0N1 1121 aa31.42■■■□□ 2.62
SSNA1-202ENST00000459860 BRINP3Q76B58 766 aa31.42■■■□□ 2.62
SSNA1-202ENST00000459860 LRP6O75581 1613 aa31.42■■■□□ 2.62
SSNA1-202ENST00000459860 SPATA31A6Q5VVP1 1343 aa31.41■■■□□ 2.62
SSNA1-202ENST00000459860 LRPPRCP42704 1394 aaKnown RBP31.41■■■□□ 2.62
SSNA1-202ENST00000459860 DCCP43146 1447 aa31.41■■■□□ 2.62
SSNA1-202ENST00000459860 NALCNQ8IZF0 1738 aa31.39■■■□□ 2.62
SSNA1-202ENST00000459860 TMEM132EQ6IEE7 984 aa31.39■■■□□ 2.62
SSNA1-202ENST00000459860 YTHDC2Q9H6S0 1430 aaKnown RBP31.39■■■□□ 2.62
SSNA1-202ENST00000459860 STK26Q9P289 416 aa31.38■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms