RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ZMYM4Q5VZL5 1548 aa20.32■□□□□ 0.84
LDLR-202ENST00000455727 RNF123Q5XPI4 1314 aa20.31■□□□□ 0.84
LDLR-202ENST00000455727 EIF3AQ14152 1382 aaKnown RBP20.3■□□□□ 0.84
LDLR-202ENST00000455727 NEO1Q92859 1461 aa20.3■□□□□ 0.84
LDLR-202ENST00000455727 FRMPD1Q5SYB0 1578 aa20.3■□□□□ 0.84
LDLR-202ENST00000455727 SYNMO15061 1565 aa20.3■□□□□ 0.84
LDLR-202ENST00000455727 SLC24A1O60721 1099 aa20.3■□□□□ 0.84
LDLR-202ENST00000455727 UGGT1Q9NYU2 1555 aa20.29■□□□□ 0.84
LDLR-202ENST00000455727 NRXN1Q9ULB1 1477 aa20.28■□□□□ 0.84
LDLR-202ENST00000455727 ABCA6Q8N139 1617 aa20.27■□□□□ 0.84
LDLR-202ENST00000455727 MROH2AA6NES4 1674 aa20.27■□□□□ 0.83
LDLR-202ENST00000455727 ADGRB3O60242 1522 aa20.26■□□□□ 0.83
LDLR-202ENST00000455727 CC2D1BQ5T0F9 858 aaKnown RBP20.25■□□□□ 0.83
LDLR-202ENST00000455727 NPATQ14207 1427 aa20.23■□□□□ 0.83
LDLR-202ENST00000455727 KDM5AP29375 1690 aaKnown RBP20.22■□□□□ 0.83
LDLR-202ENST00000455727 MYOM1P52179 1685 aa20.22■□□□□ 0.83
LDLR-202ENST00000455727 PDE3BQ13370 1112 aa20.22■□□□□ 0.83
LDLR-202ENST00000455727 ADGRF5Q8IZF2 1346 aa20.22■□□□□ 0.83
LDLR-202ENST00000455727 SETBP1Q9Y6X0 1596 aa20.21■□□□□ 0.83
LDLR-202ENST00000455727 KNSTRNQ9Y448 316 aa20.21■□□□□ 0.83
LDLR-202ENST00000455727 MYO3AQ8NEV4 1616 aa20.21■□□□□ 0.83
LDLR-202ENST00000455727 NPC1L1Q9UHC9 1359 aa20.2■□□□□ 0.82
LDLR-202ENST00000455727 CFAP70Q5T0N1 1121 aa20.2■□□□□ 0.82
LDLR-202ENST00000455727 ABCC3O15438 1527 aa20.2■□□□□ 0.82
LDLR-202ENST00000455727 BLMP54132 1417 aaPredicted RBP20.2■□□□□ 0.82
LDLR-202ENST00000455727 PPLO60437 1756 aa20.2■□□□□ 0.82
LDLR-202ENST00000455727 ASXL1Q8IXJ9 1541 aa20.19■□□□□ 0.82
LDLR-202ENST00000455727 AMER1Q5JTC6 1135 aaPredicted RBP20.18■□□□□ 0.82
LDLR-202ENST00000455727 RBM19Q9Y4C8 960 aaKnown RBP20.18■□□□□ 0.82
LDLR-202ENST00000455727 SBNO2Q9Y2G9 1366 aa20.18■□□□□ 0.82
LDLR-202ENST00000455727 CFAP65Q6ZU64 1925 aaKnown RBP20.17■□□□□ 0.82
LDLR-202ENST00000455727 CAMSAP1Q5T5Y3 1602 aa20.17■□□□□ 0.82
LDLR-202ENST00000455727 GGT6Q6P531 493 aa20.17■□□□□ 0.82
LDLR-202ENST00000455727 RICTORQ6R327 1708 aa20.17■□□□□ 0.82
LDLR-202ENST00000455727 DIP2CQ9Y2E4 1556 aa20.16■□□□□ 0.82
LDLR-202ENST00000455727 RPGRIP1LQ68CZ1 1315 aa20.16■□□□□ 0.82
LDLR-202ENST00000455727 NOS1P29475 1434 aa20.16■□□□□ 0.82
LDLR-202ENST00000455727 ERVK-7P63135 1459 aa20.16■□□□□ 0.82
LDLR-202ENST00000455727 PIK3C2GO75747 1445 aa20.14■□□□□ 0.81
LDLR-202ENST00000455727 GLI2P10070 1586 aa20.14■□□□□ 0.81
LDLR-202ENST00000455727 ZC3H13Q5T200 1668 aaKnown RBP20.13■□□□□ 0.81
LDLR-202ENST00000455727 PIK3C2BO00750 1634 aa20.13■□□□□ 0.81
LDLR-202ENST00000455727 RAPGEF3O95398 923 aa20.13■□□□□ 0.81
LDLR-202ENST00000455727 PPP2R1AP30153 589 aa20.13■□□□□ 0.81
LDLR-202ENST00000455727 B4GALNT3Q6L9W6 998 aa20.13■□□□□ 0.81
LDLR-202ENST00000455727 ARHGAP31Q2M1Z3 1444 aa20.12■□□□□ 0.81
LDLR-202ENST00000455727 C14orf93Q9H972 538 aaKnown RBP20.11■□□□□ 0.81
LDLR-202ENST00000455727 SIGLEC1Q9BZZ2 1709 aa20.11■□□□□ 0.81
LDLR-202ENST00000455727 SENP3-EIF4A1A0A087X0R7 540 aa20.1■□□□□ 0.81
LDLR-202ENST00000455727 ADGRB1O14514 1584 aa20.09■□□□□ 0.81
LDLR-202ENST00000455727 CHGAP10645 457 aaKnown RBP20.08■□□□□ 0.81
LDLR-202ENST00000455727 CENPJQ9HC77 1338 aaPredicted RBP20.07■□□□□ 0.8
LDLR-202ENST00000455727 RCAN3Q9UKA8 241 aa20.07■□□□□ 0.8
LDLR-202ENST00000455727 ADAMTS8Q9UP79 889 aa20.05■□□□□ 0.8
LDLR-202ENST00000455727 RRP1P56182 461 aaKnown RBP20.05■□□□□ 0.8
LDLR-202ENST00000455727 QRICH2Q9H0J4 1663 aa20.04■□□□□ 0.8
LDLR-202ENST00000455727 SALL2Q9Y467 1007 aaPredicted RBP20.03■□□□□ 0.8
LDLR-202ENST00000455727 WDR43Q15061 677 aaKnown RBP eCLIP20.03■□□□□ 0.8
LDLR-202ENST00000455727 NEXMIFQ5QGS0 1516 aa20.03■□□□□ 0.8
LDLR-202ENST00000455727 VGFO15240 615 aaPredicted RBP20.02■□□□□ 0.79
LDLR-202ENST00000455727 CCDC136Q96JN2 1154 aa20.01■□□□□ 0.79
LDLR-202ENST00000455727 YEATS2Q9ULM3 1422 aa20.01■□□□□ 0.79
LDLR-202ENST00000455727 CDCA7LQ96GN5 454 aa20.01■□□□□ 0.79
LDLR-202ENST00000455727 CARD14Q9BXL6 1004 aa20.01■□□□□ 0.79
LDLR-202ENST00000455727 ZFYVE9O95405 1425 aa20■□□□□ 0.79
LDLR-202ENST00000455727 SLC52A1Q9NWF4 448 aa20■□□□□ 0.79
LDLR-202ENST00000455727 PUS7Q96PZ0 661 aaKnown RBP19.99■□□□□ 0.79
LDLR-202ENST00000455727 TRAK1Q9UPV9 953 aa19.99■□□□□ 0.79
LDLR-202ENST00000455727 FANCIQ9NVI1 1328 aa19.98■□□□□ 0.79
LDLR-202ENST00000455727 CYB5RLQ6IPT4 315 aa19.98■□□□□ 0.79
LDLR-202ENST00000455727 PREX1Q8TCU6 1659 aa19.97■□□□□ 0.79
LDLR-202ENST00000455727 ARHGEF28Q8N1W1 1705 aaKnown RBP19.96■□□□□ 0.79
LDLR-202ENST00000455727 RIMBP3CA6NJZ7 1639 aa19.96■□□□□ 0.79
LDLR-202ENST00000455727 RIMBP3BA6NNM3 1639 aa19.96■□□□□ 0.79
LDLR-202ENST00000455727 RIMBP3Q9UFD9 1639 aa19.96■□□□□ 0.79
LDLR-202ENST00000455727 IDI1Q13907 227 aa19.96■□□□□ 0.79
LDLR-202ENST00000455727 DIP2BQ9P265 1576 aa19.95■□□□□ 0.78
LDLR-202ENST00000455727 ZNF521Q96K83 1311 aa19.95■□□□□ 0.78
LDLR-202ENST00000455727 USP32Q8NFA0 1604 aa19.95■□□□□ 0.78
LDLR-202ENST00000455727 TMEM132EQ6IEE7 984 aa19.94■□□□□ 0.78
LDLR-202ENST00000455727 REREQ9P2R6 1566 aa19.93■□□□□ 0.78
LDLR-202ENST00000455727 TMEM131LA2VDJ0 1609 aa19.93■□□□□ 0.78
LDLR-202ENST00000455727 PLEKHH1Q9ULM0 1364 aa19.93■□□□□ 0.78
LDLR-202ENST00000455727 MYO5BQ9ULV0 1848 aa19.92■□□□□ 0.78
LDLR-202ENST00000455727 POLR3AO14802 1390 aaPredicted RBP19.91■□□□□ 0.78
LDLR-202ENST00000455727 NGEFQ8N5V2 710 aa19.91■□□□□ 0.78
LDLR-202ENST00000455727 FAM69CQ0P6D2 419 aa19.9■□□□□ 0.78
LDLR-202ENST00000455727 NSD3Q9BZ95 1437 aa19.9■□□□□ 0.78
LDLR-202ENST00000455727 EXOC6Q8TAG9 804 aa19.9■□□□□ 0.78
LDLR-202ENST00000455727 PPP6R1Q9UPN7 881 aa19.9■□□□□ 0.78
LDLR-202ENST00000455727 EVC2Q86UK5 1308 aa19.89■□□□□ 0.78
LDLR-202ENST00000455727 GOLGA2Q08379 1002 aa19.89■□□□□ 0.77
LDLR-202ENST00000455727 AGLP35573 1532 aa19.89■□□□□ 0.77
LDLR-202ENST00000455727 ANP32EQ9BTT0 268 aa19.88■□□□□ 0.77
LDLR-202ENST00000455727 SLC12A5Q9H2X9 1139 aa19.88■□□□□ 0.77
LDLR-202ENST00000455727 DUSP27Q5VZP5 1158 aa19.88■□□□□ 0.77
LDLR-202ENST00000455727 TULP4Q9NRJ4 1543 aa19.87■□□□□ 0.77
LDLR-202ENST00000455727 TRMT2AQ8IZ69 625 aaKnown RBP19.85■□□□□ 0.77
LDLR-202ENST00000455727 NUTM2DQ5VT03 806 aaPredicted RBP19.85■□□□□ 0.77
LDLR-202ENST00000455727 TSPOAP1O95153 1857 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms