RNA–Protein interactions for RNA: ENST00000455111.1

GPC1-206, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 841 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-206ENST00000455111 SLC52A1Q9NWF4 448 aa24.81■■□□□ 1.56
GPC1-206ENST00000455111 STAG3Q9UJ98 1225 aa24.81■■□□□ 1.56
GPC1-206ENST00000455111 CHD2O14647 1828 aaKnown RBP24.78■■□□□ 1.56
GPC1-206ENST00000455111 RBM33Q96EV2 1170 aaKnown RBP24.76■■□□□ 1.55
GPC1-206ENST00000455111 TMEM94Q12767 1356 aa24.76■■□□□ 1.55
GPC1-206ENST00000455111 KCNA6P17658 529 aa24.75■■□□□ 1.55
GPC1-206ENST00000455111 SENP3Q9H4L4 574 aaPredicted RBP24.75■■□□□ 1.55
GPC1-206ENST00000455111 RIMS2Q9UQ26 1411 aa24.75■■□□□ 1.55
GPC1-206ENST00000455111 ITGAEP38570 1179 aa24.73■■□□□ 1.55
GPC1-206ENST00000455111 PLEKHG1Q9ULL1 1385 aa24.72■■□□□ 1.55
GPC1-206ENST00000455111 NKTRP30414 1462 aaKnown RBP24.7■■□□□ 1.55
GPC1-206ENST00000455111 ADAMTS13Q76LX8 1427 aa24.69■■□□□ 1.54
GPC1-206ENST00000455111 NUP155O75694 1391 aa24.69■■□□□ 1.54
GPC1-206ENST00000455111 ROBO1Q9Y6N7 1651 aa24.69■■□□□ 1.54
GPC1-206ENST00000455111 SPHKAPQ2M3C7 1700 aa24.69■■□□□ 1.54
GPC1-206ENST00000455111 RRBP1Q9P2E9 1410 aaKnown RBP24.68■■□□□ 1.54
GPC1-206ENST00000455111 NRXN3Q9Y4C0 1643 aa24.66■■□□□ 1.54
GPC1-206ENST00000455111 FAM135BQ49AJ0 1406 aa24.66■■□□□ 1.54
GPC1-206ENST00000455111 NUTM2DQ5VT03 806 aaPredicted RBP24.65■■□□□ 1.54
GPC1-206ENST00000455111 PROSER2Q86WR7 435 aaPredicted RBP24.64■■□□□ 1.54
GPC1-206ENST00000455111 CHGAP10645 457 aaKnown RBP24.61■■□□□ 1.53
GPC1-206ENST00000455111 NAIPQ13075 1403 aa24.61■■□□□ 1.53
GPC1-206ENST00000455111 CLTCL1P53675 1640 aa24.6■■□□□ 1.53
GPC1-206ENST00000455111 PTPRUQ92729 1446 aa24.6■■□□□ 1.53
GPC1-206ENST00000455111 DIP2AQ14689 1571 aa24.59■■□□□ 1.53
GPC1-206ENST00000455111 TBX22Q9Y458 520 aa24.59■■□□□ 1.53
GPC1-206ENST00000455111 BCANQ96GW7 911 aa24.58■■□□□ 1.53
GPC1-206ENST00000455111 RGS17Q9UGC6 210 aaPredicted RBP24.57■■□□□ 1.52
GPC1-206ENST00000455111 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.56■■□□□ 1.52
GPC1-206ENST00000455111 PPP1R15AO75807 674 aaPredicted RBP24.56■■□□□ 1.52
GPC1-206ENST00000455111 XRN1Q8IZH2 1706 aaKnown RBP24.54■■□□□ 1.52
GPC1-206ENST00000455111 SETBP1Q9Y6X0 1596 aa24.54■■□□□ 1.52
GPC1-206ENST00000455111 PHLPP1O60346 1717 aa24.52■■□□□ 1.52
GPC1-206ENST00000455111 TRPM2O94759 1503 aa24.52■■□□□ 1.52
GPC1-206ENST00000455111 NEXMIFQ5QGS0 1516 aa24.52■■□□□ 1.52
GPC1-206ENST00000455111 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.52■■□□□ 1.52
GPC1-206ENST00000455111 MSH6P52701 1360 aa24.52■■□□□ 1.52
GPC1-206ENST00000455111 COL16A1Q07092 1604 aaPredicted RBP24.5■■□□□ 1.51
GPC1-206ENST00000455111 HDGFP51858 240 aaKnown RBP24.5■■□□□ 1.51
GPC1-206ENST00000455111 PIK3R4Q99570 1358 aa24.49■■□□□ 1.51
GPC1-206ENST00000455111 SLAIN2Q9P270 581 aa24.48■■□□□ 1.51
GPC1-206ENST00000455111 NCOA3Q9Y6Q9 1424 aa24.47■■□□□ 1.51
GPC1-206ENST00000455111 KIF1BO60333 1816 aa24.47■■□□□ 1.51
GPC1-206ENST00000455111 SETD1AO15047 1707 aaKnown RBP24.47■■□□□ 1.51
GPC1-206ENST00000455111 HFM1A2PYH4 1435 aa24.45■■□□□ 1.51
GPC1-206ENST00000455111 PHF23Q9BUL5 403 aaPredicted RBP24.45■■□□□ 1.5
GPC1-206ENST00000455111 METP08581 1390 aa24.44■■□□□ 1.5
GPC1-206ENST00000455111 AMOTL2Q9Y2J4 779 aa24.43■■□□□ 1.5
GPC1-206ENST00000455111 AHDC1Q5TGY3 1603 aaPredicted RBP24.4■■□□□ 1.5
GPC1-206ENST00000455111 NALCNQ8IZF0 1738 aa24.39■■□□□ 1.5
GPC1-206ENST00000455111 LRP6O75581 1613 aa24.37■■□□□ 1.49
GPC1-206ENST00000455111 PPLO60437 1756 aa24.37■■□□□ 1.49
GPC1-206ENST00000455111 ZNF326Q5BKZ1 582 aaKnown RBP24.36■■□□□ 1.49
GPC1-206ENST00000455111 POTEAQ6S8J7 498 aa24.36■■□□□ 1.49
GPC1-206ENST00000455111 C19orf44Q9H6X5 657 aa24.36■■□□□ 1.49
GPC1-206ENST00000455111 SHPRHQ149N8 1683 aa24.34■■□□□ 1.49
GPC1-206ENST00000455111 MST1RQ04912 1400 aa24.33■■□□□ 1.49
GPC1-206ENST00000455111 NHSL1Q5SYE7 1610 aa24.32■■□□□ 1.48
GPC1-206ENST00000455111 JCADQ9P266 1359 aa24.32■■□□□ 1.48
GPC1-206ENST00000455111 C14orf37Q86TY3 774 aa24.31■■□□□ 1.48
GPC1-206ENST00000455111 CADPS2Q86UW7 1296 aa24.31■■□□□ 1.48
GPC1-206ENST00000455111 DCCP43146 1447 aa24.3■■□□□ 1.48
GPC1-206ENST00000455111 BRINP3Q76B58 766 aa24.3■■□□□ 1.48
GPC1-206ENST00000455111 ASXL1Q8IXJ9 1541 aa24.3■■□□□ 1.48
GPC1-206ENST00000455111 FOXD1Q16676 465 aa24.29■■□□□ 1.48
GPC1-206ENST00000455111 TRIM52Q96A61 297 aa24.29■■□□□ 1.48
GPC1-206ENST00000455111 IFT172Q9UG01 1749 aa24.27■■□□□ 1.48
GPC1-206ENST00000455111 ATF3P18847 181 aa24.27■■□□□ 1.48
GPC1-206ENST00000455111 ADGRL3Q9HAR2 1447 aa24.27■■□□□ 1.48
GPC1-206ENST00000455111 SLC4A1APQ9BWU0 796 aaKnown RBP24.25■■□□□ 1.47
GPC1-206ENST00000455111 ROBO2Q9HCK4 1378 aa24.23■■□□□ 1.47
GPC1-206ENST00000455111 PRAG1Q86YV5 1406 aa24.23■■□□□ 1.47
GPC1-206ENST00000455111 PTCH1Q13635 1447 aa24.21■■□□□ 1.47
GPC1-206ENST00000455111 SPATA31E1Q6ZUB1 1445 aa24.2■■□□□ 1.46
GPC1-206ENST00000455111 DDX17Q92841 729 aaKnown RBP24.2■■□□□ 1.46
GPC1-206ENST00000455111 LAMC1P11047 1609 aa24.2■■□□□ 1.46
GPC1-206ENST00000455111 SETD5Q9C0A6 1442 aa24.18■■□□□ 1.46
GPC1-206ENST00000455111 SPATA31A6Q5VVP1 1343 aa24.17■■□□□ 1.46
GPC1-206ENST00000455111 RPGRIP1LQ68CZ1 1315 aa24.16■■□□□ 1.46
GPC1-206ENST00000455111 C1orf167Q5SNV9 1468 aa24.16■■□□□ 1.46
GPC1-206ENST00000455111 VGFO15240 615 aaPredicted RBP24.16■■□□□ 1.46
GPC1-206ENST00000455111 ADGRF5Q8IZF2 1346 aa24.15■■□□□ 1.46
GPC1-206ENST00000455111 MPHOSPH9Q99550 1183 aa24.13■■□□□ 1.45
GPC1-206ENST00000455111 CCDC144AA2RUR9 1427 aa24.1■■□□□ 1.45
GPC1-206ENST00000455111 PNPLA6Q8IY17 1366 aa24.09■■□□□ 1.45
GPC1-206ENST00000455111 KNDC1Q76NI1 1749 aa24.09■■□□□ 1.45
GPC1-206ENST00000455111 ORAI2Q96SN7 254 aa24.08■■□□□ 1.45
GPC1-206ENST00000455111 CDC42BPGQ6DT37 1551 aa24.07■■□□□ 1.44
GPC1-206ENST00000455111 RGL3Q3MIN7 710 aa24.06■■□□□ 1.44
GPC1-206ENST00000455111 TECPR2O15040 1411 aa24.06■■□□□ 1.44
GPC1-206ENST00000455111 PIK3C2GO75747 1445 aa24.06■■□□□ 1.44
GPC1-206ENST00000455111 NUTM2BA6NNL0 878 aaPredicted RBP24.05■■□□□ 1.44
GPC1-206ENST00000455111 NUTM2EB1AL46 878 aaPredicted RBP24.05■■□□□ 1.44
GPC1-206ENST00000455111 NUTM2AQ8IVF1 878 aaPredicted RBP24.05■■□□□ 1.44
GPC1-206ENST00000455111 PLEKHH1Q9ULM0 1364 aa24.03■■□□□ 1.44
GPC1-206ENST00000455111 MEX3CQ5U5Q3 659 aaKnown RBP24.02■■□□□ 1.44
GPC1-206ENST00000455111 SOS2Q07890 1332 aaPredicted RBP24.02■■□□□ 1.44
GPC1-206ENST00000455111 LRRC59Q96AG4 307 aaKnown RBP24.01■■□□□ 1.43
GPC1-206ENST00000455111 COL22A1Q8NFW1 1626 aaPredicted RBP24.01■■□□□ 1.43
GPC1-206ENST00000455111 NRXN1Q9ULB1 1477 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms