RNA–Protein interactions for RNA: ENST00000453341.1

TNFRSF25-208, Transcript of TNF receptor superfamily member 25, human

TSL 1 (best)

Gene TNFRSF25, Length 798 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF25-208	ENST00000453341	ANKRD30A	Q9BXX3	1397 aa		34.23	■■■■□ 3.07
TNFRSF25-208	ENST00000453341	FGD6	Q6ZV73	1430 aa		34.22	■■■■□ 3.07
TNFRSF25-208	ENST00000453341	JCAD	Q9P266	1359 aa		34.2	■■■■□ 3.07
TNFRSF25-208	ENST00000453341	BCAN	Q96GW7	911 aa		34.19	■■■■□ 3.06
TNFRSF25-208	ENST00000453341	SLC52A1	Q9NWF4	448 aa		34.19	■■■■□ 3.06
TNFRSF25-208	ENST00000453341	CHD2	O14647	1828 aa	Known RBP	34.18	■■■■□ 3.06
TNFRSF25-208	ENST00000453341	ZFYVE9	O95405	1425 aa		34.18	■■■■□ 3.06
TNFRSF25-208	ENST00000453341	MYO5B	Q9ULV0	1848 aa		34.18	■■■■□ 3.06
TNFRSF25-208	ENST00000453341	COL16A1	Q07092	1604 aa	Predicted RBP	34.16	■■■■□ 3.06
TNFRSF25-208	ENST00000453341	PLEKHG1	Q9ULL1	1385 aa		34.14	■■■■□ 3.06
TNFRSF25-208	ENST00000453341	LRP6	O75581	1613 aa		34.11	■■■■□ 3.05
TNFRSF25-208	ENST00000453341	GCC2	Q8IWJ2	1684 aa		34.1	■■■■□ 3.05
TNFRSF25-208	ENST00000453341	RIMS2	Q9UQ26	1411 aa		34.1	■■■■□ 3.05
TNFRSF25-208	ENST00000453341	ADGRL2	O95490	1459 aa		34.09	■■■■□ 3.05
TNFRSF25-208	ENST00000453341	RPRD2	Q5VT52	1461 aa	Known RBP	34.09	■■■■□ 3.05
TNFRSF25-208	ENST00000453341	TMEM131L	A2VDJ0	1609 aa		34.07	■■■■□ 3.04
TNFRSF25-208	ENST00000453341	PPP1R15A	O75807	674 aa	Predicted RBP	34.04	■■■■□ 3.04
TNFRSF25-208	ENST00000453341	NCOA3	Q9Y6Q9	1424 aa		34.03	■■■■□ 3.04
TNFRSF25-208	ENST00000453341	APLP2	Q06481	763 aa		34.02	■■■■□ 3.04
TNFRSF25-208	ENST00000453341	TBX22	Q9Y458	520 aa		34.02	■■■■□ 3.04
TNFRSF25-208	ENST00000453341	SPATA31A6	Q5VVP1	1343 aa		34.01	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	ANKRD50	Q9ULJ7	1429 aa		34	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	33.99	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	ADAMTS13	Q76LX8	1427 aa		33.99	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	AHDC1	Q5TGY3	1603 aa	Predicted RBP	33.99	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	HDGF	P51858	240 aa	Known RBP	33.97	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	SHPRH	Q149N8	1683 aa		33.96	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	C14orf37	Q86TY3	774 aa		33.96	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	UPF1	Q92900	1129 aa	Known RBP eCLIP	33.96	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	MEX3C	Q5U5Q3	659 aa	Known RBP	33.95	■■■■□ 3.03
TNFRSF25-208	ENST00000453341	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.93	■■■■□ 3.02
TNFRSF25-208	ENST00000453341	ZNF772	Q68DY9	489 aa	Predicted RBP	33.93	■■■■□ 3.02
TNFRSF25-208	ENST00000453341	TRIM52	Q96A61	297 aa		33.93	■■■■□ 3.02
TNFRSF25-208	ENST00000453341	CADPS2	Q86UW7	1296 aa		33.92	■■■■□ 3.02
TNFRSF25-208	ENST00000453341	DIP2A	Q14689	1571 aa		33.91	■■■■□ 3.02
TNFRSF25-208	ENST00000453341	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.91	■■■■□ 3.02
TNFRSF25-208	ENST00000453341	C19orf44	Q9H6X5	657 aa		33.91	■■■■□ 3.02
TNFRSF25-208	ENST00000453341	CHGA	P10645	457 aa	Known RBP	33.9	■■■■□ 3.02
TNFRSF25-208	ENST00000453341	ATF3	P18847	181 aa		33.88	■■■■□ 3.01
TNFRSF25-208	ENST00000453341	PIK3R4	Q99570	1358 aa		33.87	■■■■□ 3.01
TNFRSF25-208	ENST00000453341		E9PCH4	1651 aa		33.87	■■■■□ 3.01
TNFRSF25-208	ENST00000453341	UNC13B	O14795	1591 aa		33.87	■■■■□ 3.01
TNFRSF25-208	ENST00000453341	FAM50A	Q14320	339 aa	Known RBP	33.87	■■■■□ 3.01
TNFRSF25-208	ENST00000453341	BRINP3	Q76B58	766 aa		33.84	■■■■□ 3.01
TNFRSF25-208	ENST00000453341	PTPRU	Q92729	1446 aa		33.84	■■■■□ 3.01
TNFRSF25-208	ENST00000453341	TRPM2	O94759	1503 aa		33.81	■■■■□ 3
TNFRSF25-208	ENST00000453341	RXRB	P28702	533 aa		33.8	■■■■□ 3
TNFRSF25-208	ENST00000453341	AMOTL2	Q9Y2J4	779 aa		33.8	■■■■□ 3
TNFRSF25-208	ENST00000453341	NUTM2B	A6NNL0	878 aa	Predicted RBP	33.78	■■■■□ 3
TNFRSF25-208	ENST00000453341	NUTM2E	B1AL46	878 aa	Predicted RBP	33.78	■■■■□ 3
TNFRSF25-208	ENST00000453341	NUTM2A	Q8IVF1	878 aa	Predicted RBP	33.78	■■■■□ 3
TNFRSF25-208	ENST00000453341	CDK12	Q9NYV4	1490 aa	Predicted RBP	33.76	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	ASXL1	Q8IXJ9	1541 aa		33.75	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	DCC	P43146	1447 aa		33.74	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	IQGAP3	Q86VI3	1631 aa		33.74	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	XRN1	Q8IZH2	1706 aa	Known RBP	33.73	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	NRXN3	Q9Y4C0	1643 aa		33.72	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	AFF2	P51816	1311 aa		33.72	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	SETD5	Q9C0A6	1442 aa		33.71	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	NHSL1	Q5SYE7	1610 aa		33.71	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	MST1R	Q04912	1400 aa		33.7	■■■□□ 2.99
TNFRSF25-208	ENST00000453341	SRCAP	Q6ZRS2	3230 aa		33.69	■■■□□ 2.98
TNFRSF25-208	ENST00000453341	SETBP1	Q9Y6X0	1596 aa		33.64	■■■□□ 2.98
TNFRSF25-208	ENST00000453341	RGS12	O14924	1447 aa		33.62	■■■□□ 2.97
TNFRSF25-208	ENST00000453341	ROCK1	Q13464	1354 aa		33.62	■■■□□ 2.97
TNFRSF25-208	ENST00000453341	DDX17	Q92841	729 aa	Known RBP	33.61	■■■□□ 2.97
TNFRSF25-208	ENST00000453341	NUP155	O75694	1391 aa		33.6	■■■□□ 2.97
TNFRSF25-208	ENST00000453341	MET	P08581	1390 aa		33.6	■■■□□ 2.97
TNFRSF25-208	ENST00000453341	LRRC59	Q96AG4	307 aa	Known RBP	33.6	■■■□□ 2.97
TNFRSF25-208	ENST00000453341	PNPLA6	Q8IY17	1366 aa		33.59	■■■□□ 2.97
TNFRSF25-208	ENST00000453341	C8orf37	Q96NL8	207 aa		33.58	■■■□□ 2.97
TNFRSF25-208	ENST00000453341	QTRT2	Q9H974	415 aa	Known RBP	33.56	■■■□□ 2.96
TNFRSF25-208	ENST00000453341	ADGRL3	Q9HAR2	1447 aa		33.55	■■■□□ 2.96
TNFRSF25-208	ENST00000453341	NALCN	Q8IZF0	1738 aa		33.53	■■■□□ 2.96
TNFRSF25-208	ENST00000453341	RBM6	P78332	1123 aa	Known RBP	33.53	■■■□□ 2.96
TNFRSF25-208	ENST00000453341	SPHKAP	Q2M3C7	1700 aa		33.53	■■■□□ 2.96
TNFRSF25-208	ENST00000453341	ZNF326	Q5BKZ1	582 aa	Known RBP	33.49	■■■□□ 2.95
TNFRSF25-208	ENST00000453341	C1orf167	Q5SNV9	1468 aa		33.44	■■■□□ 2.94
TNFRSF25-208	ENST00000453341	NEXMIF	Q5QGS0	1516 aa		33.44	■■■□□ 2.94
TNFRSF25-208	ENST00000453341	ADAMTS2	O95450	1211 aa		33.43	■■■□□ 2.94
TNFRSF25-208	ENST00000453341	LAMC1	P11047	1609 aa		33.42	■■■□□ 2.94
TNFRSF25-208	ENST00000453341	NGLY1	Q96IV0	654 aa		33.42	■■■□□ 2.94
TNFRSF25-208	ENST00000453341	CLTCL1	P53675	1640 aa		33.4	■■■□□ 2.94
TNFRSF25-208	ENST00000453341	ITGAE	P38570	1179 aa		33.39	■■■□□ 2.94
TNFRSF25-208	ENST00000453341	EP400	Q96L91	3159 aa		33.36	■■■□□ 2.93
TNFRSF25-208	ENST00000453341	SOS2	Q07890	1332 aa	Predicted RBP	33.35	■■■□□ 2.93
TNFRSF25-208	ENST00000453341	ORAI2	Q96SN7	254 aa		33.35	■■■□□ 2.93
TNFRSF25-208	ENST00000453341	PTCH1	Q13635	1447 aa		33.34	■■■□□ 2.93
TNFRSF25-208	ENST00000453341	ATAD2	Q6PL18	1390 aa		33.34	■■■□□ 2.93
TNFRSF25-208	ENST00000453341	USP21	Q9UK80	565 aa		33.32	■■■□□ 2.92
TNFRSF25-208	ENST00000453341	ROBO2	Q9HCK4	1378 aa		33.32	■■■□□ 2.92
TNFRSF25-208	ENST00000453341	TRPC5	Q9UL62	973 aa	Predicted RBP	33.29	■■■□□ 2.92
TNFRSF25-208	ENST00000453341	KIF1B	O60333	1816 aa		33.28	■■■□□ 2.92
TNFRSF25-208	ENST00000453341	FNBP4	Q8N3X1	1017 aa	Predicted RBP	33.28	■■■□□ 2.92
TNFRSF25-208	ENST00000453341	ATRN	O75882	1429 aa		33.28	■■■□□ 2.92
TNFRSF25-208	ENST00000453341	COL22A1	Q8NFW1	1626 aa	Predicted RBP	33.27	■■■□□ 2.92
TNFRSF25-208	ENST00000453341	PRAG1	Q86YV5	1406 aa		33.23	■■■□□ 2.91
TNFRSF25-208	ENST00000453341	MYOM2	P54296	1465 aa		33.21	■■■□□ 2.91
TNFRSF25-208	ENST00000453341	VGF	O15240	615 aa	Predicted RBP	33.16	■■■□□ 2.9
TNFRSF25-208	ENST00000453341	BCL9L	Q86UU0	1499 aa		33.16	■■■□□ 2.9

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms