RNA–Protein interactions for RNA: ENST00000451070.1

LINC01238-204, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 4

Gene LINC01238, Length 599 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-204ENST00000451070 ZFYVE9O95405 1425 aa15.25■□□□□ 0.03
LINC01238-204ENST00000451070 IQGAP3Q86VI3 1631 aa15.25■□□□□ 0.03
LINC01238-204ENST00000451070 NWD1Q149M9 1564 aa15.24■□□□□ 0.03
LINC01238-204ENST00000451070 KCNA6P17658 529 aa15.23■□□□□ 0.03
LINC01238-204ENST00000451070 TMEM94Q12767 1356 aa15.23■□□□□ 0.03
LINC01238-204ENST00000451070 RIMS2Q9UQ26 1411 aa15.21■□□□□ 0.03
LINC01238-204ENST00000451070 PPARGC1BQ86YN6 1023 aaKnown RBP15.21■□□□□ 0.03
LINC01238-204ENST00000451070 NKTRP30414 1462 aaKnown RBP15.2■□□□□ 0.02
LINC01238-204ENST00000451070 CHD2O14647 1828 aaKnown RBP15.2■□□□□ 0.02
LINC01238-204ENST00000451070 PLEKHG1Q9ULL1 1385 aa15.2■□□□□ 0.02
LINC01238-204ENST00000451070 PROSER2Q86WR7 435 aaPredicted RBP15.19■□□□□ 0.02
LINC01238-204ENST00000451070 RBM33Q96EV2 1170 aaKnown RBP15.19■□□□□ 0.02
LINC01238-204ENST00000451070 ITGAEP38570 1179 aa15.18■□□□□ 0.02
LINC01238-204ENST00000451070 NUP155O75694 1391 aa15.18■□□□□ 0.02
LINC01238-204ENST00000451070 FAM135BQ49AJ0 1406 aa15.17■□□□□ 0.02
LINC01238-204ENST00000451070 BCANQ96GW7 911 aa15.17■□□□□ 0.02
LINC01238-204ENST00000451070 ROBO1Q9Y6N7 1651 aa15.16■□□□□ 0.02
LINC01238-204ENST00000451070 PPP1R15AO75807 674 aaPredicted RBP15.15■□□□□ 0.02
LINC01238-204ENST00000451070 CHGAP10645 457 aaKnown RBP15.15■□□□□ 0.02
LINC01238-204ENST00000451070 HDGFP51858 240 aaKnown RBP15.15■□□□□ 0.02
LINC01238-204ENST00000451070 ADAMTS13Q76LX8 1427 aa15.15■□□□□ 0.02
LINC01238-204ENST00000451070 SPHKAPQ2M3C7 1700 aa15.13■□□□□ 0.01
LINC01238-204ENST00000451070 NUTM2DQ5VT03 806 aaPredicted RBP15.13■□□□□ 0.01
LINC01238-204ENST00000451070 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.13■□□□□ 0.01
LINC01238-204ENST00000451070 TBX22Q9Y458 520 aa15.13■□□□□ 0.01
LINC01238-204ENST00000451070 RRBP1Q9P2E9 1410 aaKnown RBP15.12■□□□□ 0.01
LINC01238-204ENST00000451070 MSH6P52701 1360 aa15.11■□□□□ 0.01
LINC01238-204ENST00000451070 DIP2AQ14689 1571 aa15.11■□□□□ 0.01
LINC01238-204ENST00000451070 NRXN3Q9Y4C0 1643 aa15.08■□□□□ 0
LINC01238-204ENST00000451070 SLAIN2Q9P270 581 aa15.08■□□□□ 0
LINC01238-204ENST00000451070 RGS17Q9UGC6 210 aaPredicted RBP15.08■□□□□ 0
LINC01238-204ENST00000451070 PIK3R4Q99570 1358 aa15.08■□□□□ 0
LINC01238-204ENST00000451070 NAIPQ13075 1403 aa15.08■□□□□ 0
LINC01238-204ENST00000451070 NCOA3Q9Y6Q9 1424 aa15.08■□□□□ 0
LINC01238-204ENST00000451070 PTPRUQ92729 1446 aa15.07■□□□□ 0
LINC01238-204ENST00000451070 TRPM2O94759 1503 aa15.07■□□□□ 0
LINC01238-204ENST00000451070 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.06■□□□□ 0
LINC01238-204ENST00000451070 CLTCL1P53675 1640 aa15.06■□□□□ 0
LINC01238-204ENST00000451070 PHLPP1O60346 1717 aa15.06■□□□□ 0
LINC01238-204ENST00000451070 SETBP1Q9Y6X0 1596 aa15.05■□□□□ -0
LINC01238-204ENST00000451070 XRN1Q8IZH2 1706 aaKnown RBP15.03■□□□□ -0
LINC01238-204ENST00000451070 AMOTL2Q9Y2J4 779 aa15.03■□□□□ -0
LINC01238-204ENST00000451070 COL16A1Q07092 1604 aaPredicted RBP15.03■□□□□ -0
LINC01238-204ENST00000451070 NEXMIFQ5QGS0 1516 aa15.02□□□□□ -0.01
LINC01238-204ENST00000451070 KIF1BO60333 1816 aa15.01□□□□□ -0.01
LINC01238-204ENST00000451070 C14orf37Q86TY3 774 aa15.01□□□□□ -0.01
LINC01238-204ENST00000451070 C19orf44Q9H6X5 657 aa15.01□□□□□ -0.01
LINC01238-204ENST00000451070 ZNF326Q5BKZ1 582 aaKnown RBP15□□□□□ -0.01
LINC01238-204ENST00000451070 HFM1A2PYH4 1435 aa15□□□□□ -0.01
LINC01238-204ENST00000451070 METP08581 1390 aa14.99□□□□□ -0.01
LINC01238-204ENST00000451070 CADPS2Q86UW7 1296 aa14.99□□□□□ -0.01
LINC01238-204ENST00000451070 AHDC1Q5TGY3 1603 aaPredicted RBP14.99□□□□□ -0.01
LINC01238-204ENST00000451070 JCADQ9P266 1359 aa14.98□□□□□ -0.01
LINC01238-204ENST00000451070 POTEAQ6S8J7 498 aa14.98□□□□□ -0.01
LINC01238-204ENST00000451070 ATF3P18847 181 aa14.97□□□□□ -0.01
LINC01238-204ENST00000451070 DCCP43146 1447 aa14.97□□□□□ -0.01
LINC01238-204ENST00000451070 SETD1AO15047 1707 aaKnown RBP14.95□□□□□ -0.02
LINC01238-204ENST00000451070 TRIM52Q96A61 297 aa14.95□□□□□ -0.02
LINC01238-204ENST00000451070 SHPRHQ149N8 1683 aa14.94□□□□□ -0.02
LINC01238-204ENST00000451070 BRINP3Q76B58 766 aa14.94□□□□□ -0.02
LINC01238-204ENST00000451070 LRP6O75581 1613 aa14.94□□□□□ -0.02
LINC01238-204ENST00000451070 NALCNQ8IZF0 1738 aa14.94□□□□□ -0.02
LINC01238-204ENST00000451070 MST1RQ04912 1400 aa14.93□□□□□ -0.02
LINC01238-204ENST00000451070 ASXL1Q8IXJ9 1541 aa14.92□□□□□ -0.02
LINC01238-204ENST00000451070 SLC4A1APQ9BWU0 796 aaKnown RBP14.92□□□□□ -0.02
LINC01238-204ENST00000451070 PPLO60437 1756 aa14.92□□□□□ -0.02
LINC01238-204ENST00000451070 NHSL1Q5SYE7 1610 aa14.92□□□□□ -0.02
LINC01238-204ENST00000451070 ADGRL3Q9HAR2 1447 aa14.92□□□□□ -0.02
LINC01238-204ENST00000451070 SPATA31A6Q5VVP1 1343 aa14.91□□□□□ -0.02
LINC01238-204ENST00000451070 VGFO15240 615 aaPredicted RBP14.89□□□□□ -0.03
LINC01238-204ENST00000451070 FOXD1Q16676 465 aa14.88□□□□□ -0.03
LINC01238-204ENST00000451070 PTCH1Q13635 1447 aa14.88□□□□□ -0.03
LINC01238-204ENST00000451070 RPGRIP1LQ68CZ1 1315 aa14.88□□□□□ -0.03
LINC01238-204ENST00000451070 ROBO2Q9HCK4 1378 aa14.87□□□□□ -0.03
LINC01238-204ENST00000451070 PRAG1Q86YV5 1406 aa14.87□□□□□ -0.03
LINC01238-204ENST00000451070 SETD5Q9C0A6 1442 aa14.87□□□□□ -0.03
LINC01238-204ENST00000451070 DDX17Q92841 729 aaKnown RBP14.85□□□□□ -0.03
LINC01238-204ENST00000451070 C1orf167Q5SNV9 1468 aa14.84□□□□□ -0.03
LINC01238-204ENST00000451070 IFT172Q9UG01 1749 aa14.84□□□□□ -0.03
LINC01238-204ENST00000451070 LAMC1P11047 1609 aa14.84□□□□□ -0.03
LINC01238-204ENST00000451070 SPATA31E1Q6ZUB1 1445 aa14.83□□□□□ -0.03
LINC01238-204ENST00000451070 MEX3CQ5U5Q3 659 aaKnown RBP14.83□□□□□ -0.04
LINC01238-204ENST00000451070 CCDC144AA2RUR9 1427 aa14.83□□□□□ -0.04
LINC01238-204ENST00000451070 NUTM2BA6NNL0 878 aaPredicted RBP14.82□□□□□ -0.04
LINC01238-204ENST00000451070 NUTM2EB1AL46 878 aaPredicted RBP14.82□□□□□ -0.04
LINC01238-204ENST00000451070 NUTM2AQ8IVF1 878 aaPredicted RBP14.82□□□□□ -0.04
LINC01238-204ENST00000451070 MPHOSPH9Q99550 1183 aa14.82□□□□□ -0.04
LINC01238-204ENST00000451070 ADGRF5Q8IZF2 1346 aa14.82□□□□□ -0.04
LINC01238-204ENST00000451070 ZNF772Q68DY9 489 aaPredicted RBP14.81□□□□□ -0.04
LINC01238-204ENST00000451070 LRRC59Q96AG4 307 aaKnown RBP14.81□□□□□ -0.04
LINC01238-204ENST00000451070 PNPLA6Q8IY17 1366 aa14.8□□□□□ -0.04
LINC01238-204ENST00000451070 RGL3Q3MIN7 710 aa14.79□□□□□ -0.04
LINC01238-204ENST00000451070 ORAI2Q96SN7 254 aa14.79□□□□□ -0.04
LINC01238-204ENST00000451070 ANKRD30BQ9BXX2 1392 aa14.77□□□□□ -0.04
LINC01238-204ENST00000451070 AFF2P51816 1311 aa14.77□□□□□ -0.04
LINC01238-204ENST00000451070 SOS2Q07890 1332 aaPredicted RBP14.77□□□□□ -0.04
LINC01238-204ENST00000451070 CDC42BPGQ6DT37 1551 aa14.77□□□□□ -0.05
LINC01238-204ENST00000451070 TECPR2O15040 1411 aa14.76□□□□□ -0.05
LINC01238-204ENST00000451070 KNDC1Q76NI1 1749 aa14.76□□□□□ -0.05
LINC01238-204ENST00000451070 PIK3C2GO75747 1445 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms