RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SOCS7O14512 581 aa10.78□□□□□ -0.68
VPS41-208ENST00000448833 KCNA6P17658 529 aa10.78□□□□□ -0.68
VPS41-208ENST00000448833 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.78□□□□□ -0.68
VPS41-208ENST00000448833 BCANQ96GW7 911 aa10.78□□□□□ -0.68
VPS41-208ENST00000448833 MYO5BQ9ULV0 1848 aa10.77□□□□□ -0.68
VPS41-208ENST00000448833 IQGAP3Q86VI3 1631 aa10.76□□□□□ -0.69
VPS41-208ENST00000448833 PPP1R15AO75807 674 aaPredicted RBP10.76□□□□□ -0.69
VPS41-208ENST00000448833 XIRP1Q702N8 1843 aaKnown RBP10.76□□□□□ -0.69
VPS41-208ENST00000448833 ILDR2Q71H61 639 aa10.75□□□□□ -0.69
VPS41-208ENST00000448833 PROSER2Q86WR7 435 aaPredicted RBP10.75□□□□□ -0.69
VPS41-208ENST00000448833 TMEM131LA2VDJ0 1609 aa10.75□□□□□ -0.69
VPS41-208ENST00000448833 E9PCH4 1651 aa10.75□□□□□ -0.69
VPS41-208ENST00000448833 ITGAEP38570 1179 aa10.74□□□□□ -0.69
VPS41-208ENST00000448833 SLC26A8Q96RN1 970 aa10.74□□□□□ -0.69
VPS41-208ENST00000448833 CHD2O14647 1828 aaKnown RBP10.74□□□□□ -0.69
VPS41-208ENST00000448833 NUP155O75694 1391 aa10.74□□□□□ -0.69
VPS41-208ENST00000448833 PLEKHG1Q9ULL1 1385 aa10.74□□□□□ -0.69
VPS41-208ENST00000448833 NKTRP30414 1462 aaKnown RBP10.74□□□□□ -0.69
VPS41-208ENST00000448833 CHGAP10645 457 aaKnown RBP10.73□□□□□ -0.69
VPS41-208ENST00000448833 TBX22Q9Y458 520 aa10.73□□□□□ -0.69
VPS41-208ENST00000448833 ALKQ9UM73 1620 aa10.73□□□□□ -0.69
VPS41-208ENST00000448833 FAM135BQ49AJ0 1406 aa10.72□□□□□ -0.69
VPS41-208ENST00000448833 RIMS2Q9UQ26 1411 aa10.72□□□□□ -0.69
VPS41-208ENST00000448833 ZFYVE9O95405 1425 aa10.71□□□□□ -0.69
VPS41-208ENST00000448833 TMEM94Q12767 1356 aa10.71□□□□□ -0.69
VPS41-208ENST00000448833 MED1Q15648 1581 aaPredicted RBP10.71□□□□□ -0.69
VPS41-208ENST00000448833 NCOA3Q9Y6Q9 1424 aa10.71□□□□□ -0.69
VPS41-208ENST00000448833 DIP2AQ14689 1571 aa10.7□□□□□ -0.7
VPS41-208ENST00000448833 NWD1Q149M9 1564 aa10.7□□□□□ -0.7
VPS41-208ENST00000448833 MSH6P52701 1360 aa10.7□□□□□ -0.7
VPS41-208ENST00000448833 PIK3R4Q99570 1358 aa10.7□□□□□ -0.7
VPS41-208ENST00000448833 NCBP3Q53F19 620 aaKnown RBP10.7□□□□□ -0.7
VPS41-208ENST00000448833 SPHKAPQ2M3C7 1700 aa10.7□□□□□ -0.7
VPS41-208ENST00000448833 PPARGC1BQ86YN6 1023 aaKnown RBP10.68□□□□□ -0.7
VPS41-208ENST00000448833 SLAIN2Q9P270 581 aa10.68□□□□□ -0.7
VPS41-208ENST00000448833 KIF1BO60333 1816 aa10.68□□□□□ -0.7
VPS41-208ENST00000448833 RRBP1Q9P2E9 1410 aaKnown RBP10.67□□□□□ -0.7
VPS41-208ENST00000448833 ROBO1Q9Y6N7 1651 aa10.66□□□□□ -0.7
VPS41-208ENST00000448833 C14orf37Q86TY3 774 aa10.66□□□□□ -0.7
VPS41-208ENST00000448833 TRPM2O94759 1503 aa10.66□□□□□ -0.7
VPS41-208ENST00000448833 ACIN1Q9UKV3 1341 aaKnown RBP10.65□□□□□ -0.7
VPS41-208ENST00000448833 ZNF326Q5BKZ1 582 aaKnown RBP10.65□□□□□ -0.7
VPS41-208ENST00000448833 CADPS2Q86UW7 1296 aa10.65□□□□□ -0.7
VPS41-208ENST00000448833 C19orf44Q9H6X5 657 aa10.65□□□□□ -0.7
VPS41-208ENST00000448833 ATF3P18847 181 aa10.64□□□□□ -0.71
VPS41-208ENST00000448833 NAIPQ13075 1403 aa10.63□□□□□ -0.71
VPS41-208ENST00000448833 PHLPP1O60346 1717 aa10.63□□□□□ -0.71
VPS41-208ENST00000448833 ADAMTS13Q76LX8 1427 aa10.62□□□□□ -0.71
VPS41-208ENST00000448833 VGFO15240 615 aaPredicted RBP10.62□□□□□ -0.71
VPS41-208ENST00000448833 NUTM2DQ5VT03 806 aaPredicted RBP10.62□□□□□ -0.71
VPS41-208ENST00000448833 TRIM52Q96A61 297 aa10.62□□□□□ -0.71
VPS41-208ENST00000448833 RBM33Q96EV2 1170 aaKnown RBP10.62□□□□□ -0.71
VPS41-208ENST00000448833 AMOTL2Q9Y2J4 779 aa10.62□□□□□ -0.71
VPS41-208ENST00000448833 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.61□□□□□ -0.71
VPS41-208ENST00000448833 SETBP1Q9Y6X0 1596 aa10.61□□□□□ -0.71
VPS41-208ENST00000448833 HFM1A2PYH4 1435 aa10.61□□□□□ -0.71
VPS41-208ENST00000448833 RPGRIP1LQ68CZ1 1315 aa10.6□□□□□ -0.71
VPS41-208ENST00000448833 JCADQ9P266 1359 aa10.6□□□□□ -0.71
VPS41-208ENST00000448833 DCCP43146 1447 aa10.59□□□□□ -0.71
VPS41-208ENST00000448833 SLC4A1APQ9BWU0 796 aaKnown RBP10.59□□□□□ -0.71
VPS41-208ENST00000448833 CLTCL1P53675 1640 aa10.58□□□□□ -0.72
VPS41-208ENST00000448833 XRN1Q8IZH2 1706 aaKnown RBP10.57□□□□□ -0.72
VPS41-208ENST00000448833 NRXN3Q9Y4C0 1643 aa10.57□□□□□ -0.72
VPS41-208ENST00000448833 SPATA31A6Q5VVP1 1343 aa10.57□□□□□ -0.72
VPS41-208ENST00000448833 NEXMIFQ5QGS0 1516 aa10.56□□□□□ -0.72
VPS41-208ENST00000448833 CNKSR2Q8WXI2 1034 aa10.55□□□□□ -0.72
VPS41-208ENST00000448833 PTPRUQ92729 1446 aa10.55□□□□□ -0.72
VPS41-208ENST00000448833 COL16A1Q07092 1604 aaPredicted RBP10.55□□□□□ -0.72
VPS41-208ENST00000448833 AHDC1Q5TGY3 1603 aaPredicted RBP10.55□□□□□ -0.72
VPS41-208ENST00000448833 PPLO60437 1756 aa10.54□□□□□ -0.72
VPS41-208ENST00000448833 SHPRHQ149N8 1683 aa10.53□□□□□ -0.72
VPS41-208ENST00000448833 METP08581 1390 aa10.53□□□□□ -0.72
VPS41-208ENST00000448833 NPM3O75607 178 aaKnown RBP10.53□□□□□ -0.72
VPS41-208ENST00000448833 MEX3CQ5U5Q3 659 aaKnown RBP10.53□□□□□ -0.72
VPS41-208ENST00000448833 LRRC59Q96AG4 307 aaKnown RBP10.53□□□□□ -0.72
VPS41-208ENST00000448833 RGS17Q9UGC6 210 aaPredicted RBP10.53□□□□□ -0.72
VPS41-208ENST00000448833 ZNF772Q68DY9 489 aaPredicted RBP10.52□□□□□ -0.73
VPS41-208ENST00000448833 BRINP3Q76B58 766 aa10.52□□□□□ -0.73
VPS41-208ENST00000448833 CCDC144AA2RUR9 1427 aa10.51□□□□□ -0.73
VPS41-208ENST00000448833 ADGRL3Q9HAR2 1447 aa10.51□□□□□ -0.73
VPS41-208ENST00000448833 MPHOSPH9Q99550 1183 aa10.51□□□□□ -0.73
VPS41-208ENST00000448833 PTCH1Q13635 1447 aa10.5□□□□□ -0.73
VPS41-208ENST00000448833 MAPK8IP2Q13387 824 aaPredicted RBP10.5□□□□□ -0.73
VPS41-208ENST00000448833 NHSL1Q5SYE7 1610 aa10.5□□□□□ -0.73
VPS41-208ENST00000448833 ANKRD30BQ9BXX2 1392 aa10.5□□□□□ -0.73
VPS41-208ENST00000448833 SETD1AO15047 1707 aaKnown RBP10.5□□□□□ -0.73
VPS41-208ENST00000448833 NALCNQ8IZF0 1738 aa10.5□□□□□ -0.73
VPS41-208ENST00000448833 MST1RQ04912 1400 aa10.5□□□□□ -0.73
VPS41-208ENST00000448833 PRAG1Q86YV5 1406 aa10.5□□□□□ -0.73
VPS41-208ENST00000448833 ASXL1Q8IXJ9 1541 aa10.49□□□□□ -0.73
VPS41-208ENST00000448833 POTEAQ6S8J7 498 aa10.49□□□□□ -0.73
VPS41-208ENST00000448833 SETD5Q9C0A6 1442 aa10.49□□□□□ -0.73
VPS41-208ENST00000448833 IFT172Q9UG01 1749 aa10.47□□□□□ -0.73
VPS41-208ENST00000448833 RGL3Q3MIN7 710 aa10.46□□□□□ -0.73
VPS41-208ENST00000448833 LAMC1P11047 1609 aa10.46□□□□□ -0.74
VPS41-208ENST00000448833 C1orf167Q5SNV9 1468 aa10.45□□□□□ -0.74
VPS41-208ENST00000448833 ROBO2Q9HCK4 1378 aa10.45□□□□□ -0.74
VPS41-208ENST00000448833 NUTM2BA6NNL0 878 aaPredicted RBP10.45□□□□□ -0.74
VPS41-208ENST00000448833 NUTM2EB1AL46 878 aaPredicted RBP10.45□□□□□ -0.74
VPS41-208ENST00000448833 NUTM2AQ8IVF1 878 aaPredicted RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms