RNA–Protein interactions for RNA: ENST00000447540.5

CHD9-203, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5 BASIC

Gene CHD9, Length 11,509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-203ENST00000447540 ZFP91Q96JP5 570 aaPredicted RBP3.56□□□□□ -1.84
CHD9-203ENST00000447540 SENP3Q9H4L4 574 aaPredicted RBP3.56□□□□□ -1.84
CHD9-203ENST00000447540 AKNAQ7Z591 1439 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 UQCRHLA0A096LP55 91 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 FSD2A1L4K1 749 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 UQCRHP07919 91 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 SETDB1Q15047 1291 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 NBPF3Q9H094 633 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 ZKSCAN5Q9Y2L8 839 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 FMNL3Q8IVF7 1028 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 GPATCH11Q8N954 259 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 FAM210AQ96ND0 272 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 GOLGA6L10A6NI86 522 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 TRIM6-TRIM34B2RNG4 842 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 NCAPGQ9BPX3 1015 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 TRIM34Q9BYJ4 488 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 SUDS3Q9H7L9 328 aaPredicted RBP3.56□□□□□ -1.84
CHD9-203ENST00000447540 POLR3GO15318 223 aaPredicted RBP3.56□□□□□ -1.84
CHD9-203ENST00000447540 MMP14P50281 582 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 GTF2A1P52655 376 aaPredicted RBP3.56□□□□□ -1.84
CHD9-203ENST00000447540 PMFBP1Q8TBY8 1022 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 ATP1B4Q9UN42 357 aaPredicted RBP3.56□□□□□ -1.84
CHD9-203ENST00000447540 TTLL5Q6EMB2 1281 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 ABCC9O60706 1549 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 CCDC18Q5T9S5 1454 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 RGS22Q8NE09 1264 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 RAI14Q9P0K7 980 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 EIF4G1Q04637 1599 aaKnown RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 SETD5Q9C0A6 1442 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 HSP90AB1P08238 724 aaKnown RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 PAXIP1Q6ZW49 1069 aaPredicted RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 CUX2O14529 1486 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 GOLGA6L4A6NEF3 574 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 U2SURPO15042 1029 aaKnown RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 PUS7Q96PZ0 661 aaKnown RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 TDO2P48775 406 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 SATB1Q01826 763 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 PPP1R9BQ96SB3 815 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 NOL7Q9UMY1 257 aaKnown RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 ATP6V1DQ9Y5K8 247 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 GTF2E1P29083 439 aaPredicted RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 UVSSAQ2YD98 709 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 RBM26Q5T8P6 1007 aaKnown RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 KIAA1328Q86T90 577 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 R3HCC1Q9Y3T6 440 aaKnown RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 PAXBP1Q9Y5B6 917 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 CCDC196A0A1B0GTZ2 297 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 FRAT2O75474 233 aaPredicted RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 HAP1P54257 671 aaPredicted RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 FAM9BQ8IZU0 186 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 BANK1Q8NDB2 785 aa3.55□□□□□ -1.84
CHD9-203ENST00000447540 HMGB2P26583 209 aaKnown RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 RRP1P56182 461 aaKnown RBP3.55□□□□□ -1.84
CHD9-203ENST00000447540 NEMFO60524 1076 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 HDAC1Q13547 482 aaPredicted RBP3.54□□□□□ -1.84
CHD9-203ENST00000447540 DDX11Q96FC9 970 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 ANKRD18BA2A2Z9 1011 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 ERCC4Q92889 916 aaPredicted RBP3.54□□□□□ -1.84
CHD9-203ENST00000447540 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.54□□□□□ -1.843e-10■■■■■ 27.7
CHD9-203ENST00000447540 ATP6V1AP38606 617 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 LEKR1Q6ZMV7 388 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 TPRNQ4KMQ1 711 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 SMC4Q9NTJ3 1288 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 ZMYM4Q5VZL5 1548 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 NBPF9Q3BBW0 867 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 PRDM4Q9UKN5 801 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 LAMC3Q9Y6N6 1575 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 XRCC6P12956 609 aaKnown RBP eCLIP3.54□□□□□ -1.843e-6■■■□□ 16.1
CHD9-203ENST00000447540 MYRIPQ8NFW9 859 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 FAM135AQ9P2D6 1515 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 KCNJ4P48050 445 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 MCM2P49736 904 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 HSP90B2PQ58FF3 399 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 WWC1Q8IX03 1113 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 MTUS2Q5JR59 1369 aa3.54□□□□□ -1.84
CHD9-203ENST00000447540 CNTLNQ9NXG0 1405 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 SRPK2P78362 688 aaKnown RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 CC2D2BQ6DHV5 1058 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 AEBP1Q8IUX7 1158 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 A0A1B0GUA9 196 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 NUCKS1Q9H1E3 243 aaKnown RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 H0YHG0 523 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 MPHOSPH10O00566 681 aaKnown RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 MAP2K1Q02750 393 aaPredicted RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 PRKRIP1Q9H875 184 aaPredicted RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 CWC22Q9HCG8 908 aaKnown RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 NBPF6Q5VWK0 638 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 NBPF5PQ86XG9 351 aaPredicted RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 NBPF4Q96M43 638 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 RWDD1Q9H446 243 aaPredicted RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 ZNF853P0CG23 659 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 UTP14AQ9BVJ6 771 aaKnown RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 MKRN1Q9UHC7 482 aaKnown RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 ZBTB7CA1YPR0 619 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 SF3B2Q13435 895 aaKnown RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 SLMAPQ14BN4 828 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 NLRP13Q86W25 1043 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 RRBP1Q9P2E9 1410 aaKnown RBP3.53□□□□□ -1.84
CHD9-203ENST00000447540 CDCA8Q53HL2 280 aa3.53□□□□□ -1.84
CHD9-203ENST00000447540 CEP83Q9Y592 693 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms