RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 ZFYVE9O95405 1425 aa22.64■■□□□ 1.21
HMGN1-208ENST00000443046 CHD2O14647 1828 aaKnown RBP22.64■■□□□ 1.21
HMGN1-208ENST00000443046 MSH6P52701 1360 aa22.63■■□□□ 1.21
HMGN1-208ENST00000443046 ADGRL2O95490 1459 aa22.62■■□□□ 1.21
HMGN1-208ENST00000443046 PHLPP1O60346 1717 aa22.62■■□□□ 1.21
HMGN1-208ENST00000443046 RPRD2Q5VT52 1461 aaKnown RBP22.61■■□□□ 1.21
HMGN1-208ENST00000443046 JCADQ9P266 1359 aa22.61■■□□□ 1.21
HMGN1-208ENST00000443046 PLEKHG1Q9ULL1 1385 aa22.61■■□□□ 1.21
HMGN1-208ENST00000443046 MYO5BQ9ULV0 1848 aa22.59■■□□□ 1.21
HMGN1-208ENST00000443046 COL16A1Q07092 1604 aaPredicted RBP22.58■■□□□ 1.21
HMGN1-208ENST00000443046 NCOA3Q9Y6Q9 1424 aa22.57■■□□□ 1.2
HMGN1-208ENST00000443046 TMEM131LA2VDJ0 1609 aa22.57■■□□□ 1.2
HMGN1-208ENST00000443046 TBX22Q9Y458 520 aa22.56■■□□□ 1.2
HMGN1-208ENST00000443046 SETD1AO15047 1707 aaKnown RBP22.56■■□□□ 1.2
HMGN1-208ENST00000443046 RIMS2Q9UQ26 1411 aa22.56■■□□□ 1.2
HMGN1-208ENST00000443046 BCANQ96GW7 911 aa22.55■■□□□ 1.2
HMGN1-208ENST00000443046 APLP2Q06481 763 aa22.54■■□□□ 1.2
HMGN1-208ENST00000443046 GCC2Q8IWJ2 1684 aa22.54■■□□□ 1.2
HMGN1-208ENST00000443046 HDGFP51858 240 aaKnown RBP22.53■■□□□ 1.2
HMGN1-208ENST00000443046 ANKRD50Q9ULJ7 1429 aa22.53■■□□□ 1.2
HMGN1-208ENST00000443046 LRP6O75581 1613 aa22.51■■□□□ 1.19
HMGN1-208ENST00000443046 ADAMTS13Q76LX8 1427 aa22.5■■□□□ 1.19
HMGN1-208ENST00000443046 SPATA31A6Q5VVP1 1343 aa22.5■■□□□ 1.19
HMGN1-208ENST00000443046 PPP1R15AO75807 674 aaPredicted RBP22.48■■□□□ 1.19
HMGN1-208ENST00000443046 AHDC1Q5TGY3 1603 aaPredicted RBP22.48■■□□□ 1.19
HMGN1-208ENST00000443046 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.48■■□□□ 1.19
HMGN1-208ENST00000443046 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.47■■□□□ 1.19
HMGN1-208ENST00000443046 PIK3R4Q99570 1358 aa22.47■■□□□ 1.19
HMGN1-208ENST00000443046 DIP2AQ14689 1571 aa22.46■■□□□ 1.19
HMGN1-208ENST00000443046 C19orf44Q9H6X5 657 aa22.46■■□□□ 1.19
HMGN1-208ENST00000443046 SHPRHQ149N8 1683 aa22.46■■□□□ 1.19
HMGN1-208ENST00000443046 CADPS2Q86UW7 1296 aa22.45■■□□□ 1.18
HMGN1-208ENST00000443046 UNC13BO14795 1591 aa22.45■■□□□ 1.18
HMGN1-208ENST00000443046 ZNF772Q68DY9 489 aaPredicted RBP22.43■■□□□ 1.18
HMGN1-208ENST00000443046 UPF1Q92900 1129 aaKnown RBP eCLIP22.43■■□□□ 1.18
HMGN1-208ENST00000443046 E9PCH4 1651 aa22.42■■□□□ 1.18
HMGN1-208ENST00000443046 ATF3P18847 181 aa22.4■■□□□ 1.18
HMGN1-208ENST00000443046 FAM50AQ14320 339 aaKnown RBP22.4■■□□□ 1.18
HMGN1-208ENST00000443046 C14orf37Q86TY3 774 aa22.4■■□□□ 1.18
HMGN1-208ENST00000443046 SRCAPQ6ZRS2 3230 aa22.39■■□□□ 1.18
HMGN1-208ENST00000443046 NUTM2DQ5VT03 806 aaPredicted RBP22.39■■□□□ 1.17
HMGN1-208ENST00000443046 PTPRUQ92729 1446 aa22.39■■□□□ 1.17
HMGN1-208ENST00000443046 MEX3CQ5U5Q3 659 aaKnown RBP22.38■■□□□ 1.17
HMGN1-208ENST00000443046 BRINP3Q76B58 766 aa22.38■■□□□ 1.17
HMGN1-208ENST00000443046 TRPM2O94759 1503 aa22.37■■□□□ 1.17
HMGN1-208ENST00000443046 CHGAP10645 457 aaKnown RBP22.37■■□□□ 1.17
HMGN1-208ENST00000443046 IQGAP3Q86VI3 1631 aa22.36■■□□□ 1.17
HMGN1-208ENST00000443046 AMOTL2Q9Y2J4 779 aa22.36■■□□□ 1.17
HMGN1-208ENST00000443046 DCCP43146 1447 aa22.35■■□□□ 1.17
HMGN1-208ENST00000443046 CDK12Q9NYV4 1490 aaPredicted RBP22.34■■□□□ 1.17
HMGN1-208ENST00000443046 TRIM52Q96A61 297 aa22.34■■□□□ 1.17
HMGN1-208ENST00000443046 ROCK1Q13464 1354 aa22.33■■□□□ 1.17
HMGN1-208ENST00000443046 SETD5Q9C0A6 1442 aa22.32■■□□□ 1.16
HMGN1-208ENST00000443046 XRN1Q8IZH2 1706 aaKnown RBP22.32■■□□□ 1.16
HMGN1-208ENST00000443046 RXRBP28702 533 aa22.32■■□□□ 1.16
HMGN1-208ENST00000443046 NRXN3Q9Y4C0 1643 aa22.31■■□□□ 1.16
HMGN1-208ENST00000443046 ASXL1Q8IXJ9 1541 aa22.31■■□□□ 1.16
HMGN1-208ENST00000443046 MST1RQ04912 1400 aa22.3■■□□□ 1.16
HMGN1-208ENST00000443046 NHSL1Q5SYE7 1610 aa22.29■■□□□ 1.16
HMGN1-208ENST00000443046 SETBP1Q9Y6X0 1596 aa22.29■■□□□ 1.16
HMGN1-208ENST00000443046 AFF2P51816 1311 aa22.27■■□□□ 1.16
HMGN1-208ENST00000443046 NUTM2BA6NNL0 878 aaPredicted RBP22.26■■□□□ 1.15
HMGN1-208ENST00000443046 NUTM2EB1AL46 878 aaPredicted RBP22.26■■□□□ 1.15
HMGN1-208ENST00000443046 NUTM2AQ8IVF1 878 aaPredicted RBP22.26■■□□□ 1.15
HMGN1-208ENST00000443046 NUP155O75694 1391 aa22.25■■□□□ 1.15
HMGN1-208ENST00000443046 LRRC59Q96AG4 307 aaKnown RBP22.24■■□□□ 1.15
HMGN1-208ENST00000443046 METP08581 1390 aa22.24■■□□□ 1.15
HMGN1-208ENST00000443046 PNPLA6Q8IY17 1366 aa22.2■■□□□ 1.14
HMGN1-208ENST00000443046 ADGRL3Q9HAR2 1447 aa22.2■■□□□ 1.14
HMGN1-208ENST00000443046 SPHKAPQ2M3C7 1700 aa22.2■■□□□ 1.14
HMGN1-208ENST00000443046 RGS12O14924 1447 aa22.18■■□□□ 1.14
HMGN1-208ENST00000443046 RBM6P78332 1123 aaKnown RBP22.18■■□□□ 1.14
HMGN1-208ENST00000443046 DDX17Q92841 729 aaKnown RBP22.17■■□□□ 1.14
HMGN1-208ENST00000443046 QTRT2Q9H974 415 aaKnown RBP22.17■■□□□ 1.14
HMGN1-208ENST00000443046 NALCNQ8IZF0 1738 aa22.17■■□□□ 1.14
HMGN1-208ENST00000443046 LAMC1P11047 1609 aa22.17■■□□□ 1.14
HMGN1-208ENST00000443046 EP400Q96L91 3159 aa22.16■■□□□ 1.14
HMGN1-208ENST00000443046 C8orf37Q96NL8 207 aa22.15■■□□□ 1.14
HMGN1-208ENST00000443046 NEXMIFQ5QGS0 1516 aa22.14■■□□□ 1.13
HMGN1-208ENST00000443046 ZNF326Q5BKZ1 582 aaKnown RBP22.13■■□□□ 1.13
HMGN1-208ENST00000443046 C1orf167Q5SNV9 1468 aa22.13■■□□□ 1.13
HMGN1-208ENST00000443046 CLTCL1P53675 1640 aa22.09■■□□□ 1.13
HMGN1-208ENST00000443046 SOS2Q07890 1332 aaPredicted RBP22.09■■□□□ 1.13
HMGN1-208ENST00000443046 PTCH1Q13635 1447 aa22.08■■□□□ 1.13
HMGN1-208ENST00000443046 PRAG1Q86YV5 1406 aa22.07■■□□□ 1.12
HMGN1-208ENST00000443046 NGLY1Q96IV0 654 aa22.07■■□□□ 1.12
HMGN1-208ENST00000443046 ADAMTS2O95450 1211 aa22.05■■□□□ 1.12
HMGN1-208ENST00000443046 ITGAEP38570 1179 aa22.05■■□□□ 1.12
HMGN1-208ENST00000443046 ROBO2Q9HCK4 1378 aa22.04■■□□□ 1.12
HMGN1-208ENST00000443046 FNBP4Q8N3X1 1017 aaPredicted RBP22.04■■□□□ 1.12
HMGN1-208ENST00000443046 ORAI2Q96SN7 254 aa22.04■■□□□ 1.12
HMGN1-208ENST00000443046 KIF1BO60333 1816 aa22.03■■□□□ 1.12
HMGN1-208ENST00000443046 COL22A1Q8NFW1 1626 aaPredicted RBP22.02■■□□□ 1.12
HMGN1-208ENST00000443046 ATAD2Q6PL18 1390 aa22.02■■□□□ 1.12
HMGN1-208ENST00000443046 USP21Q9UK80 565 aa22.01■■□□□ 1.11
HMGN1-208ENST00000443046 TRPC5Q9UL62 973 aaPredicted RBP22.01■■□□□ 1.11
HMGN1-208ENST00000443046 ATRNO75882 1429 aa22■■□□□ 1.11
HMGN1-208ENST00000443046 VGFO15240 615 aaPredicted RBP21.99■■□□□ 1.11
HMGN1-208ENST00000443046 MYOM2P54296 1465 aa21.96■■□□□ 1.11
HMGN1-208ENST00000443046 HFM1A2PYH4 1435 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms