RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 RGL3Q3MIN7 710 aa18.25■□□□□ 0.51
SCLT1-202ENST00000439369 ARHGAP23Q9P227 1491 aa18.25■□□□□ 0.51
SCLT1-202ENST00000439369 HDGFP51858 240 aaKnown RBP18.24■□□□□ 0.51
SCLT1-202ENST00000439369 ZNF326Q5BKZ1 582 aaKnown RBP18.24■□□□□ 0.51
SCLT1-202ENST00000439369 TMEM2Q9UHN6 1383 aa18.24■□□□□ 0.51
SCLT1-202ENST00000439369 MYO5BQ9ULV0 1848 aa18.23■□□□□ 0.51
SCLT1-202ENST00000439369 PPLO60437 1756 aa18.23■□□□□ 0.51
SCLT1-202ENST00000439369 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.23■□□□□ 0.51
SCLT1-202ENST00000439369 RIMS2Q9UQ26 1411 aa18.22■□□□□ 0.51
SCLT1-202ENST00000439369 NRXN1Q9ULB1 1477 aa18.21■□□□□ 0.51
SCLT1-202ENST00000439369 VGFO15240 615 aaPredicted RBP18.21■□□□□ 0.51
SCLT1-202ENST00000439369 PPP1R15AO75807 674 aaPredicted RBP18.21■□□□□ 0.51
SCLT1-202ENST00000439369 DCAF11Q8TEB1 546 aa18.21■□□□□ 0.51
SCLT1-202ENST00000439369 PRAG1Q86YV5 1406 aa18.18■□□□□ 0.5
SCLT1-202ENST00000439369 EID1Q9Y6B2 187 aa18.17■□□□□ 0.5
SCLT1-202ENST00000439369 LMTK3Q96Q04 1460 aa18.17■□□□□ 0.5
SCLT1-202ENST00000439369 SCAF11Q99590 1463 aaKnown RBP18.15■□□□□ 0.5
SCLT1-202ENST00000439369 PIK3C2GO75747 1445 aa18.15■□□□□ 0.5
SCLT1-202ENST00000439369 KDM2AQ9Y2K7 1162 aa18.14■□□□□ 0.49
SCLT1-202ENST00000439369 PLEKHG1Q9ULL1 1385 aa18.14■□□□□ 0.49
SCLT1-202ENST00000439369 LAMC1P11047 1609 aa18.13■□□□□ 0.49
SCLT1-202ENST00000439369 KIAA1210Q9ULL0 1709 aa18.13■□□□□ 0.49
SCLT1-202ENST00000439369 ANKLE2Q86XL3 938 aa18.13■□□□□ 0.49
SCLT1-202ENST00000439369 SETBP1Q9Y6X0 1596 aa18.13■□□□□ 0.49
SCLT1-202ENST00000439369 TXNDC2Q86VQ3 553 aa18.12■□□□□ 0.49
SCLT1-202ENST00000439369 ADGRF5Q8IZF2 1346 aa18.12■□□□□ 0.49
SCLT1-202ENST00000439369 RALGAPBQ86X10 1494 aa18.12■□□□□ 0.49
SCLT1-202ENST00000439369 MED14O60244 1454 aa18.1■□□□□ 0.49
SCLT1-202ENST00000439369 LTKP29376 864 aa18.1■□□□□ 0.49
SCLT1-202ENST00000439369 POLR1AO95602 1720 aaPredicted RBP18.09■□□□□ 0.49
SCLT1-202ENST00000439369 TRPM1Q7Z4N2 1603 aa18.09■□□□□ 0.49
SCLT1-202ENST00000439369 NBPF8Q3BBV2 869 aa18.09■□□□□ 0.49
SCLT1-202ENST00000439369 DIP2AQ14689 1571 aa18.08■□□□□ 0.49
SCLT1-202ENST00000439369 C14orf93Q9H972 538 aaKnown RBP18.08■□□□□ 0.48
SCLT1-202ENST00000439369 GPRASP1Q5JY77 1395 aa18.07■□□□□ 0.48
SCLT1-202ENST00000439369 NRXN3Q9Y4C0 1643 aa18.06■□□□□ 0.48
SCLT1-202ENST00000439369 ALKQ9UM73 1620 aa18.05■□□□□ 0.48
SCLT1-202ENST00000439369 NUTM2DQ5VT03 806 aaPredicted RBP18.05■□□□□ 0.48
SCLT1-202ENST00000439369 NPHP4O75161 1426 aaPredicted RBP18.05■□□□□ 0.48
SCLT1-202ENST00000439369 IQGAP1P46940 1657 aa18.03■□□□□ 0.48
SCLT1-202ENST00000439369 TBX22Q9Y458 520 aa18.03■□□□□ 0.48
SCLT1-202ENST00000439369 ADAMTS13Q76LX8 1427 aa18.03■□□□□ 0.48
SCLT1-202ENST00000439369 ROCK2O75116 1388 aaKnown RBP18.03■□□□□ 0.48
SCLT1-202ENST00000439369 SETD1AO15047 1707 aaKnown RBP18.02■□□□□ 0.48
SCLT1-202ENST00000439369 CFAP70Q5T0N1 1121 aa18.02■□□□□ 0.48
SCLT1-202ENST00000439369 ADGRB1O14514 1584 aa18.01■□□□□ 0.47
SCLT1-202ENST00000439369 HSPA2P54652 639 aa18.01■□□□□ 0.47
SCLT1-202ENST00000439369 PIK3R4Q99570 1358 aa18.01■□□□□ 0.47
SCLT1-202ENST00000439369 NCKAP5LQ9HCH0 1330 aa17.99■□□□□ 0.47
SCLT1-202ENST00000439369 BCANQ96GW7 911 aa17.99■□□□□ 0.47
SCLT1-202ENST00000439369 STRCQ7RTU9 1775 aa17.98■□□□□ 0.47
SCLT1-202ENST00000439369 ASXL1Q8IXJ9 1541 aa17.98■□□□□ 0.47
SCLT1-202ENST00000439369 NBPF1Q3BBV0 1214 aa17.97■□□□□ 0.47
SCLT1-202ENST00000439369 CARD11Q9BXL7 1154 aa17.97■□□□□ 0.47
SCLT1-202ENST00000439369 DMRT2Q9Y5R5 561 aa17.96■□□□□ 0.47
SCLT1-202ENST00000439369 LRPPRCP42704 1394 aaKnown RBP17.95■□□□□ 0.46
SCLT1-202ENST00000439369 YTHDC2Q9H6S0 1430 aaKnown RBP17.95■□□□□ 0.46
SCLT1-202ENST00000439369 METP08581 1390 aa17.94■□□□□ 0.46
SCLT1-202ENST00000439369 SLC26A8Q96RN1 970 aa17.94■□□□□ 0.46
SCLT1-202ENST00000439369 TECPR2O15040 1411 aa17.94■□□□□ 0.46
SCLT1-202ENST00000439369 DLC1Q96QB1 1528 aa17.93■□□□□ 0.46
SCLT1-202ENST00000439369 EIF3AQ14152 1382 aaKnown RBP17.93■□□□□ 0.46
SCLT1-202ENST00000439369 ABCC11Q96J66 1382 aa17.93■□□□□ 0.46
SCLT1-202ENST00000439369 KNDC1Q76NI1 1749 aa17.92■□□□□ 0.46
SCLT1-202ENST00000439369 EIF4G2P78344 907 aaKnown RBP eCLIP17.92■□□□□ 0.46
SCLT1-202ENST00000439369 SIRT1Q96EB6 747 aa17.92■□□□□ 0.46
SCLT1-202ENST00000439369 USP47Q96K76 1375 aa17.91■□□□□ 0.46
SCLT1-202ENST00000439369 TMEM132EQ6IEE7 984 aa17.91■□□□□ 0.46
SCLT1-202ENST00000439369 CPS1P31327 1500 aa17.9■□□□□ 0.46
SCLT1-202ENST00000439369 NWD1Q149M9 1564 aa17.9■□□□□ 0.46
SCLT1-202ENST00000439369 FAM135BQ49AJ0 1406 aa17.89■□□□□ 0.46
SCLT1-202ENST00000439369 XRN1Q8IZH2 1706 aaKnown RBP17.89■□□□□ 0.46
SCLT1-202ENST00000439369 PTCH1Q13635 1447 aa17.89■□□□□ 0.45
SCLT1-202ENST00000439369 SLC24A1O60721 1099 aa17.88■□□□□ 0.45
SCLT1-202ENST00000439369 CHD2O14647 1828 aaKnown RBP17.88■□□□□ 0.45
SCLT1-202ENST00000439369 PTPRUQ92729 1446 aa17.88■□□□□ 0.45
SCLT1-202ENST00000439369 SENP3Q9H4L4 574 aaPredicted RBP17.87■□□□□ 0.45
SCLT1-202ENST00000439369 ARHGEF28Q8N1W1 1705 aaKnown RBP17.86■□□□□ 0.45
SCLT1-202ENST00000439369 KCNA6P17658 529 aa17.86■□□□□ 0.45
SCLT1-202ENST00000439369 SBNO2Q9Y2G9 1366 aa17.86■□□□□ 0.45
SCLT1-202ENST00000439369 NKTRP30414 1462 aaKnown RBP17.86■□□□□ 0.45
SCLT1-202ENST00000439369 TRAK1Q9UPV9 953 aa17.85■□□□□ 0.45
SCLT1-202ENST00000439369 AMOTL2Q9Y2J4 779 aa17.85■□□□□ 0.45
SCLT1-202ENST00000439369 HSPA5P11021 654 aaKnown RBP17.84■□□□□ 0.45
SCLT1-202ENST00000439369 STK26Q9P289 416 aa17.84■□□□□ 0.45
SCLT1-202ENST00000439369 CENPJQ9HC77 1338 aaPredicted RBP17.83■□□□□ 0.44
SCLT1-202ENST00000439369 ROBO2Q9HCK4 1378 aa17.81■□□□□ 0.44
SCLT1-202ENST00000439369 ST20-MTHFSA0A0A6YYL1 179 aa17.81■□□□□ 0.44
SCLT1-202ENST00000439369 NCOA3Q9Y6Q9 1424 aa17.8■□□□□ 0.44
SCLT1-202ENST00000439369 PRAM1Q96QH2 718 aa17.79■□□□□ 0.44
SCLT1-202ENST00000439369 POGKQ9P215 609 aa17.79■□□□□ 0.44
SCLT1-202ENST00000439369 QRICH2Q9H0J4 1663 aa17.79■□□□□ 0.44
SCLT1-202ENST00000439369 TESK2Q96S53 571 aa17.78■□□□□ 0.44
SCLT1-202ENST00000439369 ADGRB2O60241 1585 aa17.76■□□□□ 0.43
SCLT1-202ENST00000439369 STRCP1A6NGW2 1772 aa17.74■□□□□ 0.43
SCLT1-202ENST00000439369 TMF1P82094 1093 aa17.74■□□□□ 0.43
SCLT1-202ENST00000439369 WAPLQ7Z5K2 1190 aa17.74■□□□□ 0.43
SCLT1-202ENST00000439369 PUS7Q96PZ0 661 aaKnown RBP17.74■□□□□ 0.43
SCLT1-202ENST00000439369 PLEKHH1Q9ULM0 1364 aa17.74■□□□□ 0.43
SCLT1-202ENST00000439369 CDCA8Q53HL2 280 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms