RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 UHRF1BP1Q6BDS2 1440 aa29.63■■■□□ 2.33
CHD3-204ENST00000439235 KDM2AQ9Y2K7 1162 aa29.63■■■□□ 2.33
CHD3-204ENST00000439235 MYO5BQ9ULV0 1848 aa29.63■■■□□ 2.33
CHD3-204ENST00000439235 PPLO60437 1756 aa29.62■■■□□ 2.33
CHD3-204ENST00000439235 SETD1BQ9UPS6 1966 aaKnown RBP29.59■■■□□ 2.33
CHD3-204ENST00000439235 PRAG1Q86YV5 1406 aa29.59■■■□□ 2.33
CHD3-204ENST00000439235 RIMS2Q9UQ26 1411 aa29.58■■■□□ 2.33
CHD3-204ENST00000439235 ZFYVE9O95405 1425 aa29.56■■■□□ 2.32
CHD3-204ENST00000439235 TMEM2Q9UHN6 1383 aa29.56■■■□□ 2.32
CHD3-204ENST00000439235 THEMISQ8N1K5 641 aaPredicted RBP29.56■■■□□ 2.32
CHD3-204ENST00000439235 VGFO15240 615 aaPredicted RBP29.55■■■□□ 2.32
CHD3-204ENST00000439235 HDGFP51858 240 aaKnown RBP29.55■■■□□ 2.32
CHD3-204ENST00000439235 NRXN1Q9ULB1 1477 aa29.55■■■□□ 2.32
CHD3-204ENST00000439235 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.54■■■□□ 2.32
CHD3-204ENST00000439235 NBPF8Q3BBV2 869 aa29.53■■■□□ 2.32
CHD3-204ENST00000439235 SLIT1O75093 1534 aa29.53■■■□□ 2.32
CHD3-204ENST00000439235 ARHGAP23Q9P227 1491 aa29.52■■■□□ 2.32
CHD3-204ENST00000439235 FBXO41Q8TF61 875 aa29.51■■■□□ 2.31
CHD3-204ENST00000439235 ADGRF5Q8IZF2 1346 aa29.5■■■□□ 2.31
CHD3-204ENST00000439235 RALGAPBQ86X10 1494 aa29.5■■■□□ 2.31
CHD3-204ENST00000439235 PIK3C2GO75747 1445 aa29.48■■■□□ 2.31
CHD3-204ENST00000439235 TRPM1Q7Z4N2 1603 aa29.46■■■□□ 2.31
CHD3-204ENST00000439235 EID1Q9Y6B2 187 aa29.46■■■□□ 2.31
CHD3-204ENST00000439235 NUTM2DQ5VT03 806 aaPredicted RBP29.45■■■□□ 2.31
CHD3-204ENST00000439235 KIAA1210Q9ULL0 1709 aa29.43■■■□□ 2.3
CHD3-204ENST00000439235 LAMC1P11047 1609 aa29.42■■■□□ 2.3
CHD3-204ENST00000439235 SCAF11Q99590 1463 aaKnown RBP29.41■■■□□ 2.3
CHD3-204ENST00000439235 ROCK2O75116 1388 aaKnown RBP29.4■■■□□ 2.3
CHD3-204ENST00000439235 TXNDC2Q86VQ3 553 aa29.4■■■□□ 2.3
CHD3-204ENST00000439235 PLEKHG1Q9ULL1 1385 aa29.39■■■□□ 2.29
CHD3-204ENST00000439235 SETBP1Q9Y6X0 1596 aa29.37■■■□□ 2.29
CHD3-204ENST00000439235 GPRASP1Q5JY77 1395 aa29.37■■■□□ 2.29
CHD3-204ENST00000439235 LTKP29376 864 aa29.36■■■□□ 2.29
CHD3-204ENST00000439235 LMTK3Q96Q04 1460 aa29.36■■■□□ 2.29
CHD3-204ENST00000439235 ANKLE2Q86XL3 938 aa29.35■■■□□ 2.29
CHD3-204ENST00000439235 C14orf93Q9H972 538 aaKnown RBP29.35■■■□□ 2.29
CHD3-204ENST00000439235 CFAP70Q5T0N1 1121 aa29.34■■■□□ 2.29
CHD3-204ENST00000439235 CARD11Q9BXL7 1154 aa29.32■■■□□ 2.28
CHD3-204ENST00000439235 ALKQ9UM73 1620 aa29.31■■■□□ 2.28
CHD3-204ENST00000439235 NRXN3Q9Y4C0 1643 aa29.31■■■□□ 2.28
CHD3-204ENST00000439235 NBPF1Q3BBV0 1214 aa29.3■■■□□ 2.28
CHD3-204ENST00000439235 BCANQ96GW7 911 aa29.3■■■□□ 2.28
CHD3-204ENST00000439235 IQGAP1P46940 1657 aa29.29■■■□□ 2.28
CHD3-204ENST00000439235 POLR1AO95602 1720 aaPredicted RBP29.28■■■□□ 2.28
CHD3-204ENST00000439235 ADGRB1O14514 1584 aa29.27■■■□□ 2.28
CHD3-204ENST00000439235 DIP2AQ14689 1571 aa29.26■■■□□ 2.28
CHD3-204ENST00000439235 ADAMTS13Q76LX8 1427 aa29.25■■■□□ 2.27
CHD3-204ENST00000439235 MED14O60244 1454 aa29.24■■■□□ 2.27
CHD3-204ENST00000439235 EIF4G2P78344 907 aaKnown RBP eCLIP29.24■■■□□ 2.27
CHD3-204ENST00000439235 SENP3Q9H4L4 574 aaPredicted RBP29.24■■■□□ 2.27
CHD3-204ENST00000439235 USP47Q96K76 1375 aa29.24■■■□□ 2.27
CHD3-204ENST00000439235 SETD1AO15047 1707 aaKnown RBP29.23■■■□□ 2.27
CHD3-204ENST00000439235 NPHP4O75161 1426 aaPredicted RBP29.23■■■□□ 2.27
CHD3-204ENST00000439235 ASXL1Q8IXJ9 1541 aa29.23■■■□□ 2.27
CHD3-204ENST00000439235 HSPA2P54652 639 aa29.21■■■□□ 2.27
CHD3-204ENST00000439235 EIF3AQ14152 1382 aaKnown RBP29.19■■■□□ 2.26
CHD3-204ENST00000439235 NCKAP5LQ9HCH0 1330 aa29.19■■■□□ 2.26
CHD3-204ENST00000439235 TMEM132EQ6IEE7 984 aa29.18■■■□□ 2.26
CHD3-204ENST00000439235 TBX22Q9Y458 520 aa29.18■■■□□ 2.26
CHD3-204ENST00000439235 HSPA5P11021 654 aaKnown RBP29.16■■■□□ 2.26
CHD3-204ENST00000439235 YTHDC2Q9H6S0 1430 aaKnown RBP29.15■■■□□ 2.26
CHD3-204ENST00000439235 SLC26A8Q96RN1 970 aa29.15■■■□□ 2.26
CHD3-204ENST00000439235 METP08581 1390 aa29.14■■■□□ 2.26
CHD3-204ENST00000439235 LRPPRCP42704 1394 aaKnown RBP29.13■■■□□ 2.25
CHD3-204ENST00000439235 PIK3R4Q99570 1358 aa29.12■■■□□ 2.25
CHD3-204ENST00000439235 TRAK1Q9UPV9 953 aa29.09■■■□□ 2.25
CHD3-204ENST00000439235 DLC1Q96QB1 1528 aa29.09■■■□□ 2.25
CHD3-204ENST00000439235 ABCC11Q96J66 1382 aa29.08■■■□□ 2.25
CHD3-204ENST00000439235 ZNF316A6NFI3 1004 aaPredicted RBP29.07■■■□□ 2.24
CHD3-204ENST00000439235 KNDC1Q76NI1 1749 aa29.07■■■□□ 2.24
CHD3-204ENST00000439235 STK26Q9P289 416 aa29.07■■■□□ 2.24
CHD3-204ENST00000439235 TECPR2O15040 1411 aa29.06■■■□□ 2.24
CHD3-204ENST00000439235 ST20-MTHFSA0A0A6YYL1 179 aa29.06■■■□□ 2.24
CHD3-204ENST00000439235 ARHGEF28Q8N1W1 1705 aaKnown RBP29.06■■■□□ 2.24
CHD3-204ENST00000439235 STRCQ7RTU9 1775 aa29.05■■■□□ 2.24
CHD3-204ENST00000439235 CPS1P31327 1500 aa29.04■■■□□ 2.24
CHD3-204ENST00000439235 HIRIP3Q9BW71 556 aaPredicted RBP29.03■■■□□ 2.24
CHD3-204ENST00000439235 CENPJQ9HC77 1338 aaPredicted RBP29.02■■■□□ 2.24
CHD3-204ENST00000439235 PTPRUQ92729 1446 aa29.02■■■□□ 2.24
CHD3-204ENST00000439235 XRN1Q8IZH2 1706 aaKnown RBP29■■■□□ 2.23
CHD3-204ENST00000439235 FAM135BQ49AJ0 1406 aa29■■■□□ 2.23
CHD3-204ENST00000439235 SIRT1Q96EB6 747 aa28.99■■■□□ 2.23
CHD3-204ENST00000439235 PTCH1Q13635 1447 aa28.99■■■□□ 2.23
CHD3-204ENST00000439235 SBNO2Q9Y2G9 1366 aa28.99■■■□□ 2.23
CHD3-204ENST00000439235 SLC24A1O60721 1099 aa28.98■■■□□ 2.23
CHD3-204ENST00000439235 AMOTL2Q9Y2J4 779 aa28.98■■■□□ 2.23
CHD3-204ENST00000439235 QRICH2Q9H0J4 1663 aa28.96■■■□□ 2.23
CHD3-204ENST00000439235 PRAM1Q96QH2 718 aa28.96■■■□□ 2.23
CHD3-204ENST00000439235 POGKQ9P215 609 aa28.96■■■□□ 2.23
CHD3-204ENST00000439235 DMRT2Q9Y5R5 561 aa28.96■■■□□ 2.23
CHD3-204ENST00000439235 NWD1Q149M9 1564 aa28.96■■■□□ 2.23
CHD3-204ENST00000439235 TESK2Q96S53 571 aa28.95■■■□□ 2.22
CHD3-204ENST00000439235 CHD2O14647 1828 aaKnown RBP28.94■■■□□ 2.22
CHD3-204ENST00000439235 ROBO2Q9HCK4 1378 aa28.92■■■□□ 2.22
CHD3-204ENST00000439235 KCNA6P17658 529 aa28.92■■■□□ 2.22
CHD3-204ENST00000439235 TMF1P82094 1093 aa28.91■■■□□ 2.22
CHD3-204ENST00000439235 NKTRP30414 1462 aaKnown RBP28.89■■■□□ 2.22
CHD3-204ENST00000439235 PLEKHH1Q9ULM0 1364 aa28.88■■■□□ 2.21
CHD3-204ENST00000439235 SAFB2Q14151 953 aaKnown RBP eCLIP28.87■■■□□ 2.21
CHD3-204ENST00000439235 WAPLQ7Z5K2 1190 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms