RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SLC26A8Q96RN1 970 aa18.56■□□□□ 0.56
PTPRF-208ENST00000437607 PHF23Q9BUL5 403 aaPredicted RBP18.56■□□□□ 0.56
PTPRF-208ENST00000437607 FAM135BQ49AJ0 1406 aa18.56■□□□□ 0.56
PTPRF-208ENST00000437607 ANKRD50Q9ULJ7 1429 aa18.56■□□□□ 0.56
PTPRF-208ENST00000437607 ZFYVE9O95405 1425 aa18.55■□□□□ 0.56
PTPRF-208ENST00000437607 NKTRP30414 1462 aaKnown RBP18.54■□□□□ 0.56
PTPRF-208ENST00000437607 FAM50AQ14320 339 aaKnown RBP18.53■□□□□ 0.56
PTPRF-208ENST00000437607 RBM33Q96EV2 1170 aaKnown RBP18.53■□□□□ 0.56
PTPRF-208ENST00000437607 SLC52A1Q9NWF4 448 aa18.53■□□□□ 0.56
PTPRF-208ENST00000437607 RGS17Q9UGC6 210 aaPredicted RBP18.53■□□□□ 0.56
PTPRF-208ENST00000437607 IQGAP3Q86VI3 1631 aa18.52■□□□□ 0.55
PTPRF-208ENST00000437607 PHLPP1O60346 1717 aa18.52■□□□□ 0.55
PTPRF-208ENST00000437607 PROSER2Q86WR7 435 aaPredicted RBP18.5■□□□□ 0.55
PTPRF-208ENST00000437607 RIMS2Q9UQ26 1411 aa18.49■□□□□ 0.55
PTPRF-208ENST00000437607 PLEKHG1Q9ULL1 1385 aa18.48■□□□□ 0.55
PTPRF-208ENST00000437607 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.46■□□□□ 0.55
PTPRF-208ENST00000437607 COL16A1Q07092 1604 aaPredicted RBP18.43■□□□□ 0.54
PTPRF-208ENST00000437607 BCANQ96GW7 911 aa18.43■□□□□ 0.54
PTPRF-208ENST00000437607 SPHKAPQ2M3C7 1700 aa18.43■□□□□ 0.54
PTPRF-208ENST00000437607 MSH6P52701 1360 aa18.42■□□□□ 0.54
PTPRF-208ENST00000437607 DIP2AQ14689 1571 aa18.42■□□□□ 0.54
PTPRF-208ENST00000437607 ADAMTS13Q76LX8 1427 aa18.42■□□□□ 0.54
PTPRF-208ENST00000437607 ROCK1Q13464 1354 aa18.42■□□□□ 0.54
PTPRF-208ENST00000437607 NRXN3Q9Y4C0 1643 aa18.41■□□□□ 0.54
PTPRF-208ENST00000437607 SETD1AO15047 1707 aaKnown RBP18.4■□□□□ 0.54
PTPRF-208ENST00000437607 PPP1R15AO75807 674 aaPredicted RBP18.39■□□□□ 0.53
PTPRF-208ENST00000437607 POTEAQ6S8J7 498 aa18.39■□□□□ 0.53
PTPRF-208ENST00000437607 SLAIN2Q9P270 581 aa18.39■□□□□ 0.53
PTPRF-208ENST00000437607 TBX22Q9Y458 520 aa18.39■□□□□ 0.53
PTPRF-208ENST00000437607 CHGAP10645 457 aaKnown RBP18.37■□□□□ 0.53
PTPRF-208ENST00000437607 NUTM2DQ5VT03 806 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-208ENST00000437607 TRPM2O94759 1503 aa18.36■□□□□ 0.53
PTPRF-208ENST00000437607 HDGFP51858 240 aaKnown RBP18.36■□□□□ 0.53
PTPRF-208ENST00000437607 SHPRHQ149N8 1683 aa18.36■□□□□ 0.53
PTPRF-208ENST00000437607 XRN1Q8IZH2 1706 aaKnown RBP18.36■□□□□ 0.53
PTPRF-208ENST00000437607 RRBP1Q9P2E9 1410 aaKnown RBP18.36■□□□□ 0.53
PTPRF-208ENST00000437607 NCOA3Q9Y6Q9 1424 aa18.36■□□□□ 0.53
PTPRF-208ENST00000437607 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.35■□□□□ 0.53
PTPRF-208ENST00000437607 AHDC1Q5TGY3 1603 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-208ENST00000437607 PTPRUQ92729 1446 aa18.34■□□□□ 0.53
PTPRF-208ENST00000437607 TRIM26Q12899 539 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-208ENST00000437607 NUP155O75694 1391 aa18.33■□□□□ 0.53
PTPRF-208ENST00000437607 PIK3R4Q99570 1358 aa18.33■□□□□ 0.53
PTPRF-208ENST00000437607 JCADQ9P266 1359 aa18.33■□□□□ 0.53
PTPRF-208ENST00000437607 SETBP1Q9Y6X0 1596 aa18.32■□□□□ 0.52
PTPRF-208ENST00000437607 KIF1BO60333 1816 aa18.32■□□□□ 0.52
PTPRF-208ENST00000437607 LRP6O75581 1613 aa18.31■□□□□ 0.52
PTPRF-208ENST00000437607 CLTCL1P53675 1640 aa18.31■□□□□ 0.52
PTPRF-208ENST00000437607 ITGAEP38570 1179 aa18.29■□□□□ 0.52
PTPRF-208ENST00000437607 NHSL1Q5SYE7 1610 aa18.29■□□□□ 0.52
PTPRF-208ENST00000437607 NALCNQ8IZF0 1738 aa18.28■□□□□ 0.52
PTPRF-208ENST00000437607 C19orf44Q9H6X5 657 aa18.27■□□□□ 0.52
PTPRF-208ENST00000437607 AMOTL2Q9Y2J4 779 aa18.27■□□□□ 0.52
PTPRF-208ENST00000437607 NEXMIFQ5QGS0 1516 aa18.27■□□□□ 0.51
PTPRF-208ENST00000437607 C14orf37Q86TY3 774 aa18.26■□□□□ 0.51
PTPRF-208ENST00000437607 CADPS2Q86UW7 1296 aa18.26■□□□□ 0.51
PTPRF-208ENST00000437607 ATF3P18847 181 aa18.23■□□□□ 0.51
PTPRF-208ENST00000437607 ASXL1Q8IXJ9 1541 aa18.23■□□□□ 0.51
PTPRF-208ENST00000437607 DCCP43146 1447 aa18.23■□□□□ 0.51
PTPRF-208ENST00000437607 SPATA31A6Q5VVP1 1343 aa18.23■□□□□ 0.51
PTPRF-208ENST00000437607 METP08581 1390 aa18.21■□□□□ 0.51
PTPRF-208ENST00000437607 BRINP3Q76B58 766 aa18.21■□□□□ 0.51
PTPRF-208ENST00000437607 MST1RQ04912 1400 aa18.21■□□□□ 0.51
PTPRF-208ENST00000437607 PCGF6Q9BYE7 350 aa18.19■□□□□ 0.5
PTPRF-208ENST00000437607 PPLO60437 1756 aa18.19■□□□□ 0.5
PTPRF-208ENST00000437607 NAIPQ13075 1403 aa18.17■□□□□ 0.5
PTPRF-208ENST00000437607 ZNF326Q5BKZ1 582 aaKnown RBP18.17■□□□□ 0.5
PTPRF-208ENST00000437607 LAMC1P11047 1609 aa18.16■□□□□ 0.5
PTPRF-208ENST00000437607 SETD5Q9C0A6 1442 aa18.15■□□□□ 0.5
PTPRF-208ENST00000437607 ADGRL3Q9HAR2 1447 aa18.15■□□□□ 0.5
PTPRF-208ENST00000437607 MEX3CQ5U5Q3 659 aaKnown RBP18.14■□□□□ 0.49
PTPRF-208ENST00000437607 ZNF772Q68DY9 489 aaPredicted RBP18.12■□□□□ 0.49
PTPRF-208ENST00000437607 NUTM2BA6NNL0 878 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-208ENST00000437607 NUTM2EB1AL46 878 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-208ENST00000437607 NUTM2AQ8IVF1 878 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-208ENST00000437607 DDX17Q92841 729 aaKnown RBP18.1■□□□□ 0.49
PTPRF-208ENST00000437607 TRIM52Q96A61 297 aa18.09■□□□□ 0.49
PTPRF-208ENST00000437607 IFT172Q9UG01 1749 aa18.09■□□□□ 0.49
PTPRF-208ENST00000437607 PTCH1Q13635 1447 aa18.08■□□□□ 0.49
PTPRF-208ENST00000437607 PNPLA6Q8IY17 1366 aa18.08■□□□□ 0.49
PTPRF-208ENST00000437607 C1orf167Q5SNV9 1468 aa18.07■□□□□ 0.48
PTPRF-208ENST00000437607 CDK12Q9NYV4 1490 aaPredicted RBP18.07■□□□□ 0.48
PTPRF-208ENST00000437607 UPF1Q92900 1129 aaKnown RBP eCLIP18.07■□□□□ 0.48
PTPRF-208ENST00000437607 HFM1A2PYH4 1435 aa18.06■□□□□ 0.48
PTPRF-208ENST00000437607 PRAG1Q86YV5 1406 aa18.06■□□□□ 0.48
PTPRF-208ENST00000437607 AFF2P51816 1311 aa18.06■□□□□ 0.48
PTPRF-208ENST00000437607 LRRC59Q96AG4 307 aaKnown RBP18.06■□□□□ 0.48
PTPRF-208ENST00000437607 ROBO2Q9HCK4 1378 aa18.05■□□□□ 0.48
PTPRF-208ENST00000437607 MARF1Q9Y4F3 1742 aaKnown RBP18.05■□□□□ 0.48
PTPRF-208ENST00000437607 RXRBP28702 533 aa18.04■□□□□ 0.48
PTPRF-208ENST00000437607 COL22A1Q8NFW1 1626 aaPredicted RBP18.04■□□□□ 0.48
PTPRF-208ENST00000437607 VGFO15240 615 aaPredicted RBP18.02■□□□□ 0.48
PTPRF-208ENST00000437607 RGS12O14924 1447 aa18■□□□□ 0.47
PTPRF-208ENST00000437607 C8orf37Q96NL8 207 aa18■□□□□ 0.47
PTPRF-208ENST00000437607 ORAI2Q96SN7 254 aa18■□□□□ 0.47
PTPRF-208ENST00000437607 KNDC1Q76NI1 1749 aa18■□□□□ 0.47
PTPRF-208ENST00000437607 CDC42BPGQ6DT37 1551 aa18■□□□□ 0.47
PTPRF-208ENST00000437607 RPGRIP1LQ68CZ1 1315 aa17.99■□□□□ 0.47
PTPRF-208ENST00000437607 RGPD8O14715 1765 aaPredicted RBP17.99■□□□□ 0.47
PTPRF-208ENST00000437607 SOS2Q07890 1332 aaPredicted RBP17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms