RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 IQGAP1P46940 1657 aa17.02■□□□□ 0.32
COL28A1-203ENST00000435823 RAB3GAP2Q9H2M9 1393 aa17.02■□□□□ 0.31
COL28A1-203ENST00000435823 TMEM131LA2VDJ0 1609 aa17.01■□□□□ 0.31
COL28A1-203ENST00000435823 LTKP29376 864 aa17.01■□□□□ 0.31
COL28A1-203ENST00000435823 TRPM2O94759 1503 aa17.01■□□□□ 0.31
COL28A1-203ENST00000435823 HDGFP51858 240 aaKnown RBP17■□□□□ 0.31
COL28A1-203ENST00000435823 MYO5BQ9ULV0 1848 aa17■□□□□ 0.31
COL28A1-203ENST00000435823 CERKQ8TCT0 537 aa16.99■□□□□ 0.31
COL28A1-203ENST00000435823 MPHOSPH9Q99550 1183 aa16.99■□□□□ 0.31
COL28A1-203ENST00000435823 ZNF335Q9H4Z2 1342 aaPredicted RBP16.97■□□□□ 0.31
COL28A1-203ENST00000435823 RIMS2Q9UQ26 1411 aa16.97■□□□□ 0.31
COL28A1-203ENST00000435823 PPP1R15AO75807 674 aaPredicted RBP16.97■□□□□ 0.31
COL28A1-203ENST00000435823 CLTCL1P53675 1640 aa16.96■□□□□ 0.31
COL28A1-203ENST00000435823 LTBP4Q8N2S1 1624 aa16.96■□□□□ 0.31
COL28A1-203ENST00000435823 POTEHQ6S545 545 aa16.96■□□□□ 0.31
COL28A1-203ENST00000435823 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.96■□□□□ 0.31
COL28A1-203ENST00000435823 HRCP23327 699 aa16.95■□□□□ 0.3
COL28A1-203ENST00000435823 ZFYVE9O95405 1425 aa16.95■□□□□ 0.3
COL28A1-203ENST00000435823 KIF1BO60333 1816 aa16.94■□□□□ 0.3
COL28A1-203ENST00000435823 ZNF326Q5BKZ1 582 aaKnown RBP16.94■□□□□ 0.3
COL28A1-203ENST00000435823 BCANQ96GW7 911 aa16.94■□□□□ 0.3
COL28A1-203ENST00000435823 CPS1P31327 1500 aa16.91■□□□□ 0.3
COL28A1-203ENST00000435823 PLEKHG1Q9ULL1 1385 aa16.91■□□□□ 0.3
COL28A1-203ENST00000435823 CCDC144AA2RUR9 1427 aa16.9■□□□□ 0.3
COL28A1-203ENST00000435823 FBXO41Q8TF61 875 aa16.9■□□□□ 0.3
COL28A1-203ENST00000435823 IQSEC2Q5JU85 1478 aa16.9■□□□□ 0.3
COL28A1-203ENST00000435823 NUTM2DQ5VT03 806 aaPredicted RBP16.89■□□□□ 0.29
COL28A1-203ENST00000435823 SLC26A8Q96RN1 970 aa16.88■□□□□ 0.29
COL28A1-203ENST00000435823 ILDR1Q86SU0 546 aaPredicted RBP16.87■□□□□ 0.29
COL28A1-203ENST00000435823 NEXMIFQ5QGS0 1516 aa16.85■□□□□ 0.29
COL28A1-203ENST00000435823 RPGRIP1LQ68CZ1 1315 aa16.84■□□□□ 0.29
COL28A1-203ENST00000435823 STRCP1A6NGW2 1772 aa16.83■□□□□ 0.28
COL28A1-203ENST00000435823 TRIM26Q12899 539 aaPredicted RBP16.83■□□□□ 0.28
COL28A1-203ENST00000435823 DIP2AQ14689 1571 aa16.83■□□□□ 0.28
COL28A1-203ENST00000435823 TBX22Q9Y458 520 aa16.83■□□□□ 0.28
COL28A1-203ENST00000435823 KCNA6P17658 529 aa16.82■□□□□ 0.28
COL28A1-203ENST00000435823 ADAMTS13Q76LX8 1427 aa16.81■□□□□ 0.28
COL28A1-203ENST00000435823 VGFO15240 615 aaPredicted RBP16.81■□□□□ 0.28
COL28A1-203ENST00000435823 LRRC7Q96NW7 1537 aa16.8■□□□□ 0.28
COL28A1-203ENST00000435823 PPP4R3CPQ6ZMV5 832 aa16.8■□□□□ 0.28
COL28A1-203ENST00000435823 SETBP1Q9Y6X0 1596 aa16.8■□□□□ 0.28
COL28A1-203ENST00000435823 SPATA31E1Q6ZUB1 1445 aa16.79■□□□□ 0.28
COL28A1-203ENST00000435823 RGL3Q3MIN7 710 aa16.79■□□□□ 0.28
COL28A1-203ENST00000435823 NWD1Q149M9 1564 aa16.79■□□□□ 0.28
COL28A1-203ENST00000435823 PPLO60437 1756 aa16.79■□□□□ 0.28
COL28A1-203ENST00000435823 PIK3R4Q99570 1358 aa16.78■□□□□ 0.28
COL28A1-203ENST00000435823 ANKRD30BQ9BXX2 1392 aa16.78■□□□□ 0.28
COL28A1-203ENST00000435823 UBAP1LF5GYI3 381 aa16.77■□□□□ 0.28
COL28A1-203ENST00000435823 NKTRP30414 1462 aaKnown RBP16.77■□□□□ 0.28
COL28A1-203ENST00000435823 NRXN3Q9Y4C0 1643 aa16.77■□□□□ 0.27
COL28A1-203ENST00000435823 CHD2O14647 1828 aaKnown RBP16.77■□□□□ 0.27
COL28A1-203ENST00000435823 RNF216Q9NWF9 866 aaPredicted RBP16.76■□□□□ 0.27
COL28A1-203ENST00000435823 PROSER2Q86WR7 435 aaPredicted RBP16.75■□□□□ 0.27
COL28A1-203ENST00000435823 TOM1O60784 492 aa16.74■□□□□ 0.27
COL28A1-203ENST00000435823 IFT172Q9UG01 1749 aa16.73■□□□□ 0.27
COL28A1-203ENST00000435823 TMEM94Q12767 1356 aa16.73■□□□□ 0.27
COL28A1-203ENST00000435823 XIRP1Q702N8 1843 aaKnown RBP16.71■□□□□ 0.27
COL28A1-203ENST00000435823 AMOTL2Q9Y2J4 779 aa16.71■□□□□ 0.27
COL28A1-203ENST00000435823 METP08581 1390 aa16.71■□□□□ 0.27
COL28A1-203ENST00000435823 ADGRF5Q8IZF2 1346 aa16.7■□□□□ 0.26
COL28A1-203ENST00000435823 ALKQ9UM73 1620 aa16.7■□□□□ 0.26
COL28A1-203ENST00000435823 PTPRUQ92729 1446 aa16.7■□□□□ 0.26
COL28A1-203ENST00000435823 MYOM2P54296 1465 aa16.68■□□□□ 0.26
COL28A1-203ENST00000435823 CNKSR2Q8WXI2 1034 aa16.68■□□□□ 0.26
COL28A1-203ENST00000435823 RBM33Q96EV2 1170 aaKnown RBP16.68■□□□□ 0.26
COL28A1-203ENST00000435823 NCOA3Q9Y6Q9 1424 aa16.68■□□□□ 0.26
COL28A1-203ENST00000435823 SETD1AO15047 1707 aaKnown RBP16.67■□□□□ 0.26
COL28A1-203ENST00000435823 XRN1Q8IZH2 1706 aaKnown RBP16.67■□□□□ 0.26
COL28A1-203ENST00000435823 MSH6P52701 1360 aa16.67■□□□□ 0.26
COL28A1-203ENST00000435823 PIP4K2BP78356 416 aa16.67■□□□□ 0.26
COL28A1-203ENST00000435823 C14orf37Q86TY3 774 aa16.67■□□□□ 0.26
COL28A1-203ENST00000435823 PIK3C2GO75747 1445 aa16.66■□□□□ 0.26
COL28A1-203ENST00000435823 DCAF11Q8TEB1 546 aa16.64■□□□□ 0.25
COL28A1-203ENST00000435823 STAC3Q96MF2 364 aa16.64■□□□□ 0.25
COL28A1-203ENST00000435823 NRXN1Q9ULB1 1477 aa16.63■□□□□ 0.25
COL28A1-203ENST00000435823 DHX57Q6P158 1386 aaKnown RBP16.63■□□□□ 0.25
COL28A1-203ENST00000435823 KDM2AQ9Y2K7 1162 aa16.62■□□□□ 0.25
COL28A1-203ENST00000435823 LAMC1P11047 1609 aa16.62■□□□□ 0.25
COL28A1-203ENST00000435823 PTCH1Q13635 1447 aa16.62■□□□□ 0.25
COL28A1-203ENST00000435823 C19orf44Q9H6X5 657 aa16.6■□□□□ 0.25
COL28A1-203ENST00000435823 C14orf93Q9H972 538 aaKnown RBP16.6■□□□□ 0.25
COL28A1-203ENST00000435823 PRAG1Q86YV5 1406 aa16.6■□□□□ 0.25
COL28A1-203ENST00000435823 ATF3P18847 181 aa16.59■□□□□ 0.25
COL28A1-203ENST00000435823 CADPS2Q86UW7 1296 aa16.59■□□□□ 0.25
COL28A1-203ENST00000435823 CFAP70Q5T0N1 1121 aa16.58■□□□□ 0.24
COL28A1-203ENST00000435823 LRPPRCP42704 1394 aaKnown RBP16.58■□□□□ 0.24
COL28A1-203ENST00000435823 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.58■□□□□ 0.24
COL28A1-203ENST00000435823 ASXL1Q8IXJ9 1541 aa16.57■□□□□ 0.24
COL28A1-203ENST00000435823 ROBO2Q9HCK4 1378 aa16.57■□□□□ 0.24
COL28A1-203ENST00000435823 TMEM132EQ6IEE7 984 aa16.57■□□□□ 0.24
COL28A1-203ENST00000435823 STK26Q9P289 416 aa16.57■□□□□ 0.24
COL28A1-203ENST00000435823 DCCP43146 1447 aa16.56■□□□□ 0.24
COL28A1-203ENST00000435823 ADGRL3Q9HAR2 1447 aa16.56■□□□□ 0.24
COL28A1-203ENST00000435823 TECPR2O15040 1411 aa16.55■□□□□ 0.24
COL28A1-203ENST00000435823 FAM135BQ49AJ0 1406 aa16.55■□□□□ 0.24
COL28A1-203ENST00000435823 YTHDC2Q9H6S0 1430 aaKnown RBP16.55■□□□□ 0.24
COL28A1-203ENST00000435823 ABCC11Q96J66 1382 aa16.55■□□□□ 0.24
COL28A1-203ENST00000435823 NEUROD1Q13562 356 aa16.55■□□□□ 0.24
COL28A1-203ENST00000435823 SIN3AQ96ST3 1273 aa16.55■□□□□ 0.24
COL28A1-203ENST00000435823 PCGF6Q9BYE7 350 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms