RNA–Protein interactions for RNA: ENST00000434435.1

SMARCAL1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, human

TSL 4

Gene SMARCAL1, Length 544 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCAL1-208	ENST00000434435	THEMIS	Q8N1K5	641 aa	Predicted RBP	33.37	■■■□□ 2.93
SMARCAL1-208	ENST00000434435	DCAF11	Q8TEB1	546 aa		33.37	■■■□□ 2.93
SMARCAL1-208	ENST00000434435	RIMS2	Q9UQ26	1411 aa		33.36	■■■□□ 2.93
SMARCAL1-208	ENST00000434435	TMEM2	Q9UHN6	1383 aa		33.35	■■■□□ 2.93
SMARCAL1-208	ENST00000434435	ARHGAP23	Q9P227	1491 aa		33.35	■■■□□ 2.93
SMARCAL1-208	ENST00000434435	ZFYVE9	O95405	1425 aa		33.35	■■■□□ 2.93
SMARCAL1-208	ENST00000434435	STAC3	Q96MF2	364 aa		33.34	■■■□□ 2.93
SMARCAL1-208	ENST00000434435	POLR1A	O95602	1720 aa	Predicted RBP	33.32	■■■□□ 2.92
SMARCAL1-208	ENST00000434435	KDM2A	Q9Y2K7	1162 aa		33.32	■■■□□ 2.92
SMARCAL1-208	ENST00000434435	LMTK3	Q96Q04	1460 aa		33.3	■■■□□ 2.92
SMARCAL1-208	ENST00000434435	PPP1R15A	O75807	674 aa	Predicted RBP	33.28	■■■□□ 2.92
SMARCAL1-208	ENST00000434435	HDGF	P51858	240 aa	Known RBP	33.28	■■■□□ 2.92
SMARCAL1-208	ENST00000434435	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.28	■■■□□ 2.92
SMARCAL1-208	ENST00000434435	NRXN1	Q9ULB1	1477 aa		33.28	■■■□□ 2.92
SMARCAL1-208	ENST00000434435	PRAG1	Q86YV5	1406 aa		33.27	■■■□□ 2.92
SMARCAL1-208	ENST00000434435	VGF	O15240	615 aa	Predicted RBP	33.26	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	KIAA1210	Q9ULL0	1709 aa		33.25	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	TRPM1	Q7Z4N2	1603 aa		33.24	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	SCAF11	Q99590	1463 aa	Known RBP	33.24	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	LAMC1	P11047	1609 aa		33.24	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.23	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	EID1	Q9Y6B2	187 aa		33.23	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	ADGRF5	Q8IZF2	1346 aa		33.22	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	IQGAP1	P46940	1657 aa		33.21	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	PIK3C2G	O75747	1445 aa		33.2	■■■□□ 2.91
SMARCAL1-208	ENST00000434435	TXNDC2	Q86VQ3	553 aa		33.18	■■■□□ 2.9
SMARCAL1-208	ENST00000434435	SETBP1	Q9Y6X0	1596 aa		33.17	■■■□□ 2.9
SMARCAL1-208	ENST00000434435	NRXN3	Q9Y4C0	1643 aa		33.17	■■■□□ 2.9
SMARCAL1-208	ENST00000434435	NBPF8	Q3BBV2	869 aa		33.16	■■■□□ 2.9
SMARCAL1-208	ENST00000434435	LTK	P29376	864 aa		33.15	■■■□□ 2.9
SMARCAL1-208	ENST00000434435	RALGAPB	Q86X10	1494 aa		33.15	■■■□□ 2.9
SMARCAL1-208	ENST00000434435	ANKLE2	Q86XL3	938 aa		33.15	■■■□□ 2.9
SMARCAL1-208	ENST00000434435	PLEKHG1	Q9ULL1	1385 aa		33.15	■■■□□ 2.9
SMARCAL1-208	ENST00000434435	SETD1A	O15047	1707 aa	Known RBP	33.14	■■■□□ 2.89
SMARCAL1-208	ENST00000434435	ALK	Q9UM73	1620 aa		33.1	■■■□□ 2.89
SMARCAL1-208	ENST00000434435	HSPA2	P54652	639 aa		33.1	■■■□□ 2.89
SMARCAL1-208	ENST00000434435	STRC	Q7RTU9	1775 aa		33.09	■■■□□ 2.89
SMARCAL1-208	ENST00000434435	DIP2A	Q14689	1571 aa		33.09	■■■□□ 2.89
SMARCAL1-208	ENST00000434435	MED14	O60244	1454 aa		33.07	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	BCAN	Q96GW7	911 aa		33.04	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	NPHP4	O75161	1426 aa	Predicted RBP	33.03	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	SENP3	Q9H4L4	574 aa	Predicted RBP	33.03	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	C14orf93	Q9H972	538 aa	Known RBP	33.03	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	ROCK2	O75116	1388 aa	Known RBP	33.03	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	CFAP70	Q5T0N1	1121 aa		33.02	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	AEBP2	Q6ZN18	517 aa	Predicted RBP	33.02	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	ADAMTS13	Q76LX8	1427 aa		33.02	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	NCKAP5L	Q9HCH0	1330 aa		33.02	■■■□□ 2.88
SMARCAL1-208	ENST00000434435	ASXL1	Q8IXJ9	1541 aa		33	■■■□□ 2.87
SMARCAL1-208	ENST00000434435	ADGRB1	O14514	1584 aa		33	■■■□□ 2.87
SMARCAL1-208	ENST00000434435	GPRASP1	Q5JY77	1395 aa		32.98	■■■□□ 2.87
SMARCAL1-208	ENST00000434435	NBPF1	Q3BBV0	1214 aa		32.95	■■■□□ 2.87
SMARCAL1-208	ENST00000434435	KNDC1	Q76NI1	1749 aa		32.92	■■■□□ 2.86
SMARCAL1-208	ENST00000434435	SLC26A8	Q96RN1	970 aa		32.91	■■■□□ 2.86
SMARCAL1-208	ENST00000434435	CARD11	Q9BXL7	1154 aa		32.91	■■■□□ 2.86
SMARCAL1-208	ENST00000434435	TBX22	Q9Y458	520 aa		32.9	■■■□□ 2.86
SMARCAL1-208	ENST00000434435	CHD2	O14647	1828 aa	Known RBP	32.89	■■■□□ 2.86
SMARCAL1-208	ENST00000434435	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.88	■■■□□ 2.85
SMARCAL1-208	ENST00000434435	MET	P08581	1390 aa		32.87	■■■□□ 2.85
SMARCAL1-208	ENST00000434435	TMEM132E	Q6IEE7	984 aa		32.87	■■■□□ 2.85
SMARCAL1-208	ENST00000434435	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.85	■■■□□ 2.85
SMARCAL1-208	ENST00000434435	PIK3R4	Q99570	1358 aa		32.84	■■■□□ 2.85
SMARCAL1-208	ENST00000434435	XRN1	Q8IZH2	1706 aa	Known RBP	32.84	■■■□□ 2.85
SMARCAL1-208	ENST00000434435	LRPPRC	P42704	1394 aa	Known RBP	32.82	■■■□□ 2.84
SMARCAL1-208	ENST00000434435	USP47	Q96K76	1375 aa		32.82	■■■□□ 2.84
SMARCAL1-208	ENST00000434435	CPS1	P31327	1500 aa		32.8	■■■□□ 2.84
SMARCAL1-208	ENST00000434435	DLC1	Q96QB1	1528 aa		32.79	■■■□□ 2.84
SMARCAL1-208	ENST00000434435	EIF3A	Q14152	1382 aa	Known RBP	32.79	■■■□□ 2.84
SMARCAL1-208	ENST00000434435	NWD1	Q149M9	1564 aa		32.79	■■■□□ 2.84
SMARCAL1-208	ENST00000434435	PTPRU	Q92729	1446 aa		32.77	■■■□□ 2.84
SMARCAL1-208	ENST00000434435	EIF4G2	P78344	907 aa	Known RBP eCLIP	32.76	■■■□□ 2.83
SMARCAL1-208	ENST00000434435	DMRT2	Q9Y5R5	561 aa		32.76	■■■□□ 2.83
SMARCAL1-208	ENST00000434435	TECPR2	O15040	1411 aa		32.76	■■■□□ 2.83
SMARCAL1-208	ENST00000434435	QRICH2	Q9H0J4	1663 aa		32.75	■■■□□ 2.83
SMARCAL1-208	ENST00000434435	ABCC11	Q96J66	1382 aa		32.75	■■■□□ 2.83
SMARCAL1-208	ENST00000434435	STK26	Q9P289	416 aa		32.75	■■■□□ 2.83
SMARCAL1-208	ENST00000434435	TRAK1	Q9UPV9	953 aa		32.74	■■■□□ 2.83
SMARCAL1-208	ENST00000434435	STRCP1	A6NGW2	1772 aa		32.71	■■■□□ 2.83
SMARCAL1-208	ENST00000434435	PTCH1	Q13635	1447 aa		32.69	■■■□□ 2.82
SMARCAL1-208	ENST00000434435	HSPA5	P11021	654 aa	Known RBP	32.69	■■■□□ 2.82
SMARCAL1-208	ENST00000434435	AMOTL2	Q9Y2J4	779 aa		32.69	■■■□□ 2.82
SMARCAL1-208	ENST00000434435	FAM135B	Q49AJ0	1406 aa		32.67	■■■□□ 2.82
SMARCAL1-208	ENST00000434435	NKTR	P30414	1462 aa	Known RBP	32.66	■■■□□ 2.82
SMARCAL1-208	ENST00000434435	KCNA6	P17658	529 aa		32.65	■■■□□ 2.82
SMARCAL1-208	ENST00000434435	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.63	■■■□□ 2.81
SMARCAL1-208	ENST00000434435	ST20-MTHFS	A0A0A6YYL1	179 aa		32.63	■■■□□ 2.81
SMARCAL1-208	ENST00000434435	ROBO2	Q9HCK4	1378 aa		32.62	■■■□□ 2.81
SMARCAL1-208	ENST00000434435	SIRT1	Q96EB6	747 aa		32.62	■■■□□ 2.81
SMARCAL1-208	ENST00000434435	PRAM1	Q96QH2	718 aa		32.6	■■■□□ 2.81
SMARCAL1-208	ENST00000434435	POGK	Q9P215	609 aa		32.6	■■■□□ 2.81
SMARCAL1-208	ENST00000434435	SBNO2	Q9Y2G9	1366 aa		32.58	■■■□□ 2.81
SMARCAL1-208	ENST00000434435	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.57	■■■□□ 2.8
SMARCAL1-208	ENST00000434435	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.56	■■■□□ 2.8
SMARCAL1-208	ENST00000434435	PLEKHH1	Q9ULM0	1364 aa		32.56	■■■□□ 2.8
SMARCAL1-208	ENST00000434435	WAPL	Q7Z5K2	1190 aa		32.54	■■■□□ 2.8
SMARCAL1-208	ENST00000434435	NALCN	Q8IZF0	1738 aa		32.54	■■■□□ 2.8
SMARCAL1-208	ENST00000434435	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.53	■■■□□ 2.8
SMARCAL1-208	ENST00000434435	ADGRB2	O60241	1585 aa		32.53	■■■□□ 2.8
SMARCAL1-208	ENST00000434435	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.52	■■■□□ 2.8
SMARCAL1-208	ENST00000434435	TESK2	Q96S53	571 aa		32.51	■■■□□ 2.79

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms