RNA–Protein interactions for RNA: ENST00000433709.6

HDAC9-213, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-213ENST00000433709 TTLL12Q14166 644 aaPredicted RBP12.14□□□□□ -0.47
HDAC9-213ENST00000433709 ANKK1Q8NFD2 765 aa12.14□□□□□ -0.47
HDAC9-213ENST00000433709 KCTD12Q96CX2 325 aaKnown RBP12.14□□□□□ -0.47
HDAC9-213ENST00000433709 DAXXQ9UER7 740 aaPredicted RBP12.14□□□□□ -0.47
HDAC9-213ENST00000433709 PARP9Q8IXQ6 854 aa12.13□□□□□ -0.47
HDAC9-213ENST00000433709 TMUB1Q9BVT8 246 aa12.13□□□□□ -0.47
HDAC9-213ENST00000433709 CLCN1P35523 988 aa12.12□□□□□ -0.47
HDAC9-213ENST00000433709 BCAMP50895 628 aa12.12□□□□□ -0.47
HDAC9-213ENST00000433709 LRCH3Q96II8 777 aa12.12□□□□□ -0.47
HDAC9-213ENST00000433709 GPCPD1Q9NPB8 672 aa12.12□□□□□ -0.47
HDAC9-213ENST00000433709 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.11□□□□□ -0.47
HDAC9-213ENST00000433709 SOWAHBA6NEL2 793 aa12.1□□□□□ -0.47
HDAC9-213ENST00000433709 GPBP1L1Q9HC44 474 aaPredicted RBP12.1□□□□□ -0.47
HDAC9-213ENST00000433709 RNF40O75150 1001 aa12.09□□□□□ -0.47
HDAC9-213ENST00000433709 GIGYF2Q6Y7W6 1299 aaKnown RBP12.09□□□□□ -0.47
HDAC9-213ENST00000433709 DDX11L8A8MPP1 907 aa12.08□□□□□ -0.48
HDAC9-213ENST00000433709 NEUROD2Q15784 382 aa12.08□□□□□ -0.48
HDAC9-213ENST00000433709 BRPF1P55201 1214 aaPredicted RBP12.07□□□□□ -0.48
HDAC9-213ENST00000433709 THSD4Q6ZMP0 1018 aa12.07□□□□□ -0.48
HDAC9-213ENST00000433709 SLF2Q8IX21 1173 aa12.07□□□□□ -0.48
HDAC9-213ENST00000433709 FAM217BQ9NTX9 383 aaPredicted RBP12.07□□□□□ -0.48
HDAC9-213ENST00000433709 MMRN1Q13201 1228 aa12.06□□□□□ -0.48
HDAC9-213ENST00000433709 HPS5Q9UPZ3 1129 aa12.06□□□□□ -0.48
HDAC9-213ENST00000433709 SLC10A3P09131 477 aa12.05□□□□□ -0.48
HDAC9-213ENST00000433709 SSTR3P32745 418 aaPredicted RBP12.05□□□□□ -0.48
HDAC9-213ENST00000433709 RNF166Q96A37 237 aaPredicted RBP12.05□□□□□ -0.48
HDAC9-213ENST00000433709 KDM4CQ9H3R0 1056 aa12.05□□□□□ -0.48
HDAC9-213ENST00000433709 SLC4A3P48751 1232 aa12.04□□□□□ -0.48
HDAC9-213ENST00000433709 MS4A1P11836 297 aa12.03□□□□□ -0.48
HDAC9-213ENST00000433709 PTPN5P54829 565 aa12.03□□□□□ -0.48
HDAC9-213ENST00000433709 SULF1Q8IWU6 871 aa12.03□□□□□ -0.48
HDAC9-213ENST00000433709 RDH13Q8NBN7 331 aa12.03□□□□□ -0.48
HDAC9-213ENST00000433709 TSR3Q9UJK0 312 aaKnown RBP12.03□□□□□ -0.48
HDAC9-213ENST00000433709 PPP4CP60510 307 aa12.02□□□□□ -0.49
HDAC9-213ENST00000433709 WBP1LQ9NX94 342 aa12.02□□□□□ -0.49
HDAC9-213ENST00000433709 CD46P15529 392 aa12□□□□□ -0.49
HDAC9-213ENST00000433709 RSPH4AQ5TD94 716 aa11.99□□□□□ -0.49
HDAC9-213ENST00000433709 CFHP08603 1231 aa11.97□□□□□ -0.49
HDAC9-213ENST00000433709 BEGAINQ9BUH8 593 aa11.96□□□□□ -0.49
HDAC9-213ENST00000433709 FAM117AQ9C073 453 aa11.96□□□□□ -0.49
HDAC9-213ENST00000433709 GCGRP47871 477 aa11.95□□□□□ -0.5
HDAC9-213ENST00000433709 APLP1P51693 650 aa11.95□□□□□ -0.5
HDAC9-213ENST00000433709 NECTIN2Q92692 538 aa11.94□□□□□ -0.5
HDAC9-213ENST00000433709 HCSTQ9UBK5 93 aa11.93□□□□□ -0.5
HDAC9-213ENST00000433709 KMT5BQ4FZB7 885 aa11.91□□□□□ -0.5
HDAC9-213ENST00000433709 IL27Q8NEV9 243 aa11.91□□□□□ -0.5
HDAC9-213ENST00000433709 PLEKHG3A1L390 1219 aa11.89□□□□□ -0.51
HDAC9-213ENST00000433709 KDM4AO75164 1064 aa11.89□□□□□ -0.51
HDAC9-213ENST00000433709 SPIRE2Q8WWL2 714 aa11.89□□□□□ -0.51
HDAC9-213ENST00000433709 ACTN4O43707 911 aaKnown RBP11.88□□□□□ -0.51
HDAC9-213ENST00000433709 FUT2Q10981 343 aa11.88□□□□□ -0.51
HDAC9-213ENST00000433709 NYAP1Q6ZVC0 841 aa11.88□□□□□ -0.51
HDAC9-213ENST00000433709 NUTM1Q86Y26 1132 aa11.88□□□□□ -0.51
HDAC9-213ENST00000433709 PRR14Q9BWN1 585 aa11.88□□□□□ -0.51
HDAC9-213ENST00000433709 DDRGK1Q96HY6 314 aa11.87□□□□□ -0.51
HDAC9-213ENST00000433709 TBC1D2Q9BYX2 928 aa11.87□□□□□ -0.51
HDAC9-213ENST00000433709 PLSCR2Q9NRY7 297 aa11.87□□□□□ -0.51
HDAC9-213ENST00000433709 PUS10Q3MIT2 529 aaKnown RBP11.85□□□□□ -0.51
HDAC9-213ENST00000433709 HLA-CQ95604 372 aa11.84□□□□□ -0.51
HDAC9-213ENST00000433709 ATP6V1AP38606 617 aa11.83□□□□□ -0.52
HDAC9-213ENST00000433709 PCDHB3Q9Y5E6 796 aa11.83□□□□□ -0.52
HDAC9-213ENST00000433709 HOXA2O43364 376 aa11.82□□□□□ -0.52
HDAC9-213ENST00000433709 COPS2P61201 443 aa11.82□□□□□ -0.52
HDAC9-213ENST00000433709 USP46P62068 366 aa11.82□□□□□ -0.52
HDAC9-213ENST00000433709 BLOC1S3Q6QNY0 202 aa11.82□□□□□ -0.52
HDAC9-213ENST00000433709 MOXD2PA6NHM9 499 aa11.81□□□□□ -0.52
HDAC9-213ENST00000433709 NDUFV2P19404 249 aa11.81□□□□□ -0.52
HDAC9-213ENST00000433709 MYSM1Q5VVJ2 828 aa11.81□□□□□ -0.52
HDAC9-213ENST00000433709 GUCA2AQ02747 115 aa11.8□□□□□ -0.52
HDAC9-213ENST00000433709 MORN1Q5T089 497 aa11.8□□□□□ -0.52
HDAC9-213ENST00000433709 MTRQ99707 1265 aa11.8□□□□□ -0.52
HDAC9-213ENST00000433709 DIXDC1Q155Q3 683 aa11.79□□□□□ -0.52
HDAC9-213ENST00000433709 GRIPAP1Q4V328 841 aa11.79□□□□□ -0.52
HDAC9-213ENST00000433709 TJAP1Q5JTD0 557 aa11.78□□□□□ -0.52
HDAC9-213ENST00000433709 RSPH6AQ9H0K4 717 aa11.78□□□□□ -0.52
HDAC9-213ENST00000433709 POLR3EQ9NVU0 708 aa11.78□□□□□ -0.52
HDAC9-213ENST00000433709 SLC27A5Q9Y2P5 690 aa11.78□□□□□ -0.52
HDAC9-213ENST00000433709 SCUBE3Q8IX30 993 aa11.77□□□□□ -0.53
HDAC9-213ENST00000433709 RSBN1LQ6PCB5 846 aaPredicted RBP11.76□□□□□ -0.53
HDAC9-213ENST00000433709 RIC3Q7Z5B4 369 aa11.76□□□□□ -0.53
HDAC9-213ENST00000433709 ZNF516Q92618 1163 aa11.76□□□□□ -0.53
HDAC9-213ENST00000433709 NR1I2O75469 434 aa11.75□□□□□ -0.53
HDAC9-213ENST00000433709 FDX1P10109 184 aa11.75□□□□□ -0.53
HDAC9-213ENST00000433709 SH3D19Q5HYK7 790 aa11.75□□□□□ -0.53
HDAC9-213ENST00000433709 LIMD1Q9UGP4 676 aa11.75□□□□□ -0.53
HDAC9-213ENST00000433709 PCDHGC3Q9UN70 934 aa11.75□□□□□ -0.53
HDAC9-213ENST00000433709 SPTLC1O15269 473 aa11.74□□□□□ -0.53
HDAC9-213ENST00000433709 SKIV2LQ15477 1246 aaKnown RBP11.74□□□□□ -0.53
HDAC9-213ENST00000433709 PCDHB15Q9Y5E8 787 aa11.74□□□□□ -0.53
HDAC9-213ENST00000433709 IL21Q9HBE4 155 aa11.73□□□□□ -0.53
HDAC9-213ENST00000433709 ZPR1O75312 459 aa11.72□□□□□ -0.53
HDAC9-213ENST00000433709 CLK2P49760 499 aaKnown RBP11.72□□□□□ -0.53
HDAC9-213ENST00000433709 PROCA1Q8NCQ7 364 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-213ENST00000433709 CSPP1Q1MSJ5 1256 aa11.71□□□□□ -0.53
HDAC9-213ENST00000433709 ITGBL1O95965 494 aaPredicted RBP11.7□□□□□ -0.54
HDAC9-213ENST00000433709 GJA5P36382 358 aa11.7□□□□□ -0.54
HDAC9-213ENST00000433709 RNF19BQ6ZMZ0 732 aa11.7□□□□□ -0.54
HDAC9-213ENST00000433709 SYMPKQ92797 1274 aaKnown RBP11.7□□□□□ -0.54
HDAC9-213ENST00000433709 ATP1B4Q9UN42 357 aaPredicted RBP11.7□□□□□ -0.54
HDAC9-213ENST00000433709 TLL1O43897 1013 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms