RNA–Protein interactions for RNA: ENST00000433709.6

HDAC9-213, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-213ENST00000433709 AEBP2Q6ZN18 517 aaPredicted RBP28.71■■■□□ 2.19
HDAC9-213ENST00000433709 CHIC1Q5VXU3 224 aa28.05■■■□□ 2.08
HDAC9-213ENST00000433709 PHF23Q9BUL5 403 aaPredicted RBP24.74■■□□□ 1.55
HDAC9-213ENST00000433709 SENP3Q9H4L4 574 aaPredicted RBP24.27■■□□□ 1.48
HDAC9-213ENST00000433709 PLPPR3Q6T4P5 718 aa22.79■■□□□ 1.24
HDAC9-213ENST00000433709 FOXD1Q16676 465 aa22.58■■□□□ 1.21
HDAC9-213ENST00000433709 PPP6R1Q9UPN7 881 aa21.82■■□□□ 1.08
HDAC9-213ENST00000433709 ADRA2BP18089 450 aa21.8■■□□□ 1.08
HDAC9-213ENST00000433709 PIAS4Q8N2W9 510 aaPredicted RBP21.29■■□□□ 1
HDAC9-213ENST00000433709 MSH5O43196 834 aa20.72■□□□□ 0.91
HDAC9-213ENST00000433709 PPP4R3CPQ6ZMV5 832 aa20.13■□□□□ 0.81
HDAC9-213ENST00000433709 SCAF1Q9H7N4 1312 aaKnown RBP19.85■□□□□ 0.77
HDAC9-213ENST00000433709 KCNA4P22459 653 aa19.78■□□□□ 0.76
HDAC9-213ENST00000433709 MAPK8IP2Q13387 824 aaPredicted RBP19.78■□□□□ 0.76
HDAC9-213ENST00000433709 NCBP3Q53F19 620 aaKnown RBP19.57■□□□□ 0.72
HDAC9-213ENST00000433709 CNKSR2Q8WXI2 1034 aa19.52■□□□□ 0.72
HDAC9-213ENST00000433709 DMRT2Q9Y5R5 561 aa19.41■□□□□ 0.7
HDAC9-213ENST00000433709 NPM3O75607 178 aaKnown RBP19.35■□□□□ 0.69
HDAC9-213ENST00000433709 RNF216Q9NWF9 866 aaPredicted RBP19.11■□□□□ 0.65
HDAC9-213ENST00000433709 HOXD11P31277 338 aaPredicted RBP19.02■□□□□ 0.64
HDAC9-213ENST00000433709 SLC4A1APQ9BWU0 796 aaKnown RBP18.82■□□□□ 0.6
HDAC9-213ENST00000433709 POTEDQ86YR6 584 aa18.8■□□□□ 0.6
HDAC9-213ENST00000433709 DNAJC5BQ9UF47 199 aa18.69■□□□□ 0.58
HDAC9-213ENST00000433709 DCAF8L1A6NGE4 600 aa18.6■□□□□ 0.57
HDAC9-213ENST00000433709 EHMT2Q96KQ7 1210 aa18.41■□□□□ 0.54
HDAC9-213ENST00000433709 SLC4A2P04920 1241 aa18.27■□□□□ 0.52
HDAC9-213ENST00000433709 ZBTB22O15209 634 aa18.22■□□□□ 0.51
HDAC9-213ENST00000433709 CSRNP3Q8WYN3 585 aa18.15■□□□□ 0.5
HDAC9-213ENST00000433709 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.15■□□□□ 0.5
HDAC9-213ENST00000433709 FOXD4L1Q9NU39 408 aa18.13■□□□□ 0.49
HDAC9-213ENST00000433709 U3KPZ7 1027 aaPredicted RBP17.88■□□□□ 0.45
HDAC9-213ENST00000433709 MYCNP04198 464 aaPredicted RBP17.83■□□□□ 0.44
HDAC9-213ENST00000433709 RNF39Q9H2S5 420 aa17.79■□□□□ 0.44
HDAC9-213ENST00000433709 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.59■□□□□ 0.41
HDAC9-213ENST00000433709 HNRNPUL2Q1KMD3 747 aaKnown RBP17.59■□□□□ 0.41
HDAC9-213ENST00000433709 C1QBPQ07021 282 aaKnown RBP17.56■□□□□ 0.4
HDAC9-213ENST00000433709 SAMD1Q6SPF0 538 aaPredicted RBP17.56■□□□□ 0.4
HDAC9-213ENST00000433709 ATXN8OSP0DMR3 200 aa17.46■□□□□ 0.39
HDAC9-213ENST00000433709 ATF5Q9Y2D1 282 aaPredicted RBP17.43■□□□□ 0.38
HDAC9-213ENST00000433709 APLP2Q06481 763 aa17.38■□□□□ 0.37
HDAC9-213ENST00000433709 SPINK5Q9NQ38 1064 aaPredicted RBP17.38■□□□□ 0.37
HDAC9-213ENST00000433709 CACNB1Q02641 598 aaPredicted RBP17.29■□□□□ 0.36
HDAC9-213ENST00000433709 CAPN15O75808 1086 aa17.28■□□□□ 0.36
HDAC9-213ENST00000433709 TRHP20396 242 aaPredicted RBP17.23■□□□□ 0.35
HDAC9-213ENST00000433709 ZNF219Q9P2Y4 722 aaPredicted RBP17.16■□□□□ 0.34
HDAC9-213ENST00000433709 ABCB7O75027 752 aa17■□□□□ 0.31
HDAC9-213ENST00000433709 DSG3P32926 999 aa16.97■□□□□ 0.31
HDAC9-213ENST00000433709 POLA2Q14181 598 aa16.97■□□□□ 0.31
HDAC9-213ENST00000433709 MKRN4PQ13434 485 aaPredicted RBP16.66■□□□□ 0.26
HDAC9-213ENST00000433709 FBLN2P98095 1184 aa16.61■□□□□ 0.25
HDAC9-213ENST00000433709 ZBTB12Q9Y330 459 aaPredicted RBP16.61■□□□□ 0.25
HDAC9-213ENST00000433709 FKBP8Q14318 412 aa16.4■□□□□ 0.22
HDAC9-213ENST00000433709 OSCARQ8IYS5 282 aa16.39■□□□□ 0.21
HDAC9-213ENST00000433709 SPDYE4A6NLX3 237 aa16.29■□□□□ 0.2
HDAC9-213ENST00000433709 SPDYE2BA6NHP3 402 aa16.2■□□□□ 0.18
HDAC9-213ENST00000433709 SPDYE6P0CI01 402 aa16.2■□□□□ 0.18
HDAC9-213ENST00000433709 SPDYE2Q495Y8 402 aa16.2■□□□□ 0.18
HDAC9-213ENST00000433709 ZNF692Q9BU19 519 aaPredicted RBP16.18■□□□□ 0.18
HDAC9-213ENST00000433709 RBM42Q9BTD8 480 aaKnown RBP16.1■□□□□ 0.17
HDAC9-213ENST00000433709 SSUH2Q9Y2M2 353 aa16.1■□□□□ 0.17
HDAC9-213ENST00000433709 PROM2Q8N271 834 aa16.02■□□□□ 0.16
HDAC9-213ENST00000433709 PABPN1Q86U42 306 aaKnown RBP eCLIP15.98■□□□□ 0.15
HDAC9-213ENST00000433709 AKT1S1Q96B36 256 aa15.95■□□□□ 0.14
HDAC9-213ENST00000433709 REM2Q8IYK8 340 aaPredicted RBP15.84■□□□□ 0.13
HDAC9-213ENST00000433709 FBXO3Q9UK99 471 aa15.74■□□□□ 0.11
HDAC9-213ENST00000433709 SPDYE1Q8NFV5 336 aaPredicted RBP15.71■□□□□ 0.11
HDAC9-213ENST00000433709 CLEC11AQ9Y240 323 aa15.68■□□□□ 0.1
HDAC9-213ENST00000433709 STAG3Q9UJ98 1225 aa15.67■□□□□ 0.1
HDAC9-213ENST00000433709 PITPNM1O00562 1244 aa15.66■□□□□ 0.1
HDAC9-213ENST00000433709 VASPP50552 380 aaPredicted RBP15.56■□□□□ 0.08
HDAC9-213ENST00000433709 PRR29P0C7W0 189 aa15.52■□□□□ 0.08
HDAC9-213ENST00000433709 CHRDL2Q6WN34 429 aa15.46■□□□□ 0.07
HDAC9-213ENST00000433709 MIER1Q8N108 512 aa15.45■□□□□ 0.06
HDAC9-213ENST00000433709 PLCD3Q8N3E9 789 aa15.43■□□□□ 0.06
HDAC9-213ENST00000433709 IFNLR1Q8IU57 520 aaPredicted RBP15.38■□□□□ 0.05
HDAC9-213ENST00000433709 CREBZFQ9NS37 354 aa15.37■□□□□ 0.05
HDAC9-213ENST00000433709 FXR2P51116 673 aaKnown RBP eCLIP15.33■□□□□ 0.04
HDAC9-213ENST00000433709 CHADLQ6NUI6 762 aa15.31■□□□□ 0.04
HDAC9-213ENST00000433709 PLEKHG5O94827 1062 aa15.3■□□□□ 0.04
HDAC9-213ENST00000433709 KLHL34Q8N239 644 aa15.29■□□□□ 0.04
HDAC9-213ENST00000433709 PIP4P2Q8N4L2 257 aa15.29■□□□□ 0.04
HDAC9-213ENST00000433709 PRKAR2AP13861 404 aaKnown RBP15.26■□□□□ 0.03
HDAC9-213ENST00000433709 MNX1P50219 401 aaPredicted RBP15.21■□□□□ 0.03
HDAC9-213ENST00000433709 ZBTB47Q9UFB7 747 aaPredicted RBP15.19■□□□□ 0.02
HDAC9-213ENST00000433709 SPOCK2Q92563 424 aa15.15■□□□□ 0.02
HDAC9-213ENST00000433709 FARP1Q9Y4F1 1045 aaPredicted RBP15.14■□□□□ 0.01
HDAC9-213ENST00000433709 NPM1P06748 294 aaKnown RBP eCLIP15.07■□□□□ 0
HDAC9-213ENST00000433709 RTN4Q9NQC3 1192 aaKnown RBP15.06■□□□□ 0
HDAC9-213ENST00000433709 NUBP1P53384 320 aa15.05■□□□□ -0
HDAC9-213ENST00000433709 AMER1Q5JTC6 1135 aaPredicted RBP15.02■□□□□ -0
HDAC9-213ENST00000433709 RASEFQ8IZ41 740 aa14.99□□□□□ -0.01
HDAC9-213ENST00000433709 CIZ1Q9ULV3 898 aaPredicted RBP14.93□□□□□ -0.02
HDAC9-213ENST00000433709 DCAF8Q5TAQ9 597 aa14.91□□□□□ -0.02
HDAC9-213ENST00000433709 PKD2Q13563 968 aa14.9□□□□□ -0.02
HDAC9-213ENST00000433709 POTEHQ6S545 545 aa14.89□□□□□ -0.03
HDAC9-213ENST00000433709 FAM212AQ96EL1 285 aa14.89□□□□□ -0.03
HDAC9-213ENST00000433709 TSPYL2Q9H2G4 693 aaPredicted RBP14.88□□□□□ -0.03
HDAC9-213ENST00000433709 GSE1Q14687 1217 aa14.86□□□□□ -0.03
HDAC9-213ENST00000433709 CD44P16070 742 aaKnown RBP14.82□□□□□ -0.04
HDAC9-213ENST00000433709 C19orf67A6NJJ6 358 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 240.3 ms