RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 EYA1Q99502 592 aa11.24□□□□□ -0.61
USP54-206ENST00000433394 TSKSQ9UJT2 592 aa11.24□□□□□ -0.61
USP54-206ENST00000433394 PROCA1Q8NCQ7 364 aaPredicted RBP11.22□□□□□ -0.61
USP54-206ENST00000433394 RDH13Q8NBN7 331 aa11.21□□□□□ -0.61
USP54-206ENST00000433394 A6NJR5 290 aa11.2□□□□□ -0.62
USP54-206ENST00000433394 APBB1O00213 710 aa11.2□□□□□ -0.62
USP54-206ENST00000433394 MCM6Q14566 821 aa11.2□□□□□ -0.62
USP54-206ENST00000433394 TMEM259Q4ZIN3 620 aa11.2□□□□□ -0.62
USP54-206ENST00000433394 RIC3Q7Z5B4 369 aa11.2□□□□□ -0.62
USP54-206ENST00000433394 TMEM134Q9H6X4 195 aa11.2□□□□□ -0.62
USP54-206ENST00000433394 FAM198AQ9UFP1 575 aa11.2□□□□□ -0.62
USP54-206ENST00000433394 CD46P15529 392 aa11.19□□□□□ -0.62
USP54-206ENST00000433394 EMP3P54852 163 aa11.19□□□□□ -0.62
USP54-206ENST00000433394 PRM3Q9NNZ6 103 aa11.19□□□□□ -0.62
USP54-206ENST00000433394 BANK1Q8NDB2 785 aa11.18□□□□□ -0.62
USP54-206ENST00000433394 SPIRE2Q8WWL2 714 aa11.18□□□□□ -0.62
USP54-206ENST00000433394 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.18□□□□□ -0.62
USP54-206ENST00000433394 SPDYE5A6NIY4 337 aa11.17□□□□□ -0.62
USP54-206ENST00000433394 WWC1Q8IX03 1113 aa11.17□□□□□ -0.62
USP54-206ENST00000433394 TUSC1Q2TAM9 212 aa11.16□□□□□ -0.62
USP54-206ENST00000433394 ERBB3P21860 1342 aa11.15□□□□□ -0.62
USP54-206ENST00000433394 GJA5P36382 358 aa11.15□□□□□ -0.62
USP54-206ENST00000433394 RFC5P40937 340 aa11.15□□□□□ -0.62
USP54-206ENST00000433394 USP46P62068 366 aa11.15□□□□□ -0.62
USP54-206ENST00000433394 SPNS2Q8IVW8 549 aa11.15□□□□□ -0.62
USP54-206ENST00000433394 PROX2Q3B8N5 592 aa11.14□□□□□ -0.63
USP54-206ENST00000433394 CLUAP1Q96AJ1 413 aa11.14□□□□□ -0.63
USP54-206ENST00000433394 ARID3AQ99856 593 aa11.14□□□□□ -0.63
USP54-206ENST00000433394 KIAA1468Q9P260 1216 aa11.14□□□□□ -0.63
USP54-206ENST00000433394 POTEB3A0JP26 581 aa11.13□□□□□ -0.63
USP54-206ENST00000433394 SMAPO00193 183 aa11.13□□□□□ -0.63
USP54-206ENST00000433394 SPTLC1O15269 473 aa11.13□□□□□ -0.63
USP54-206ENST00000433394 POTEBQ6S5H4 581 aa11.13□□□□□ -0.63
USP54-206ENST00000433394 FAM205CA6NFA0 338 aa11.12□□□□□ -0.63
USP54-206ENST00000433394 NUTM2BA6NNL0 878 aaPredicted RBP11.12□□□□□ -0.63
USP54-206ENST00000433394 NUTM2EB1AL46 878 aaPredicted RBP11.12□□□□□ -0.63
USP54-206ENST00000433394 ARHGAP33O14559 1287 aa11.12□□□□□ -0.63
USP54-206ENST00000433394 TRAK2O60296 914 aa11.12□□□□□ -0.63
USP54-206ENST00000433394 KDM4AO75164 1064 aa11.12□□□□□ -0.63
USP54-206ENST00000433394 NUTM2DQ5VT03 806 aaPredicted RBP11.12□□□□□ -0.63
USP54-206ENST00000433394 PPP2R2DQ66LE6 453 aa11.12□□□□□ -0.63
USP54-206ENST00000433394 RSBN1LQ6PCB5 846 aaPredicted RBP11.12□□□□□ -0.63
USP54-206ENST00000433394 PROSER2Q86WR7 435 aaPredicted RBP11.12□□□□□ -0.63
USP54-206ENST00000433394 NUTM2AQ8IVF1 878 aaPredicted RBP11.12□□□□□ -0.63
USP54-206ENST00000433394 RABGEF1Q9UJ41 708 aa11.12□□□□□ -0.63
USP54-206ENST00000433394 MMRN1Q13201 1228 aa11.11□□□□□ -0.63
USP54-206ENST00000433394 CSPP1Q1MSJ5 1256 aa11.11□□□□□ -0.63
USP54-206ENST00000433394 HS3ST6Q96QI5 342 aa11.11□□□□□ -0.63
USP54-206ENST00000433394 ZBED2Q9BTP6 218 aa11.11□□□□□ -0.63
USP54-206ENST00000433394 LIMD1Q9UGP4 676 aa11.11□□□□□ -0.63
USP54-206ENST00000433394 PBX2P40425 430 aa11.1□□□□□ -0.63
USP54-206ENST00000433394 GRIPAP1Q4V328 841 aa11.1□□□□□ -0.63
USP54-206ENST00000433394 MOXD2PA6NHM9 499 aa11.08□□□□□ -0.64
USP54-206ENST00000433394 ARID3CA6NKF2 412 aa11.08□□□□□ -0.64
USP54-206ENST00000433394 VARS2Q5ST30 1063 aaKnown RBP11.08□□□□□ -0.64
USP54-206ENST00000433394 SLC4A5Q9BY07 1137 aa11.08□□□□□ -0.64
USP54-206ENST00000433394 NBPF3Q9H094 633 aa11.08□□□□□ -0.64
USP54-206ENST00000433394 PRPF38BQ5VTL8 546 aaKnown RBP11.07□□□□□ -0.64
USP54-206ENST00000433394 SLF2Q8IX21 1173 aa11.07□□□□□ -0.64
USP54-206ENST00000433394 NECTIN2Q92692 538 aa11.07□□□□□ -0.64
USP54-206ENST00000433394 ZBTB3Q9H5J0 574 aa11.07□□□□□ -0.64
USP54-206ENST00000433394 GCGRP47871 477 aa11.06□□□□□ -0.64
USP54-206ENST00000433394 PSEN2P49810 448 aa11.06□□□□□ -0.64
USP54-206ENST00000433394 FAM98CQ17RN3 349 aaKnown RBP11.06□□□□□ -0.64
USP54-206ENST00000433394 SWT1Q5T5J6 900 aaKnown RBP11.06□□□□□ -0.64
USP54-206ENST00000433394 C3orf80F5H4A9 247 aa11.05□□□□□ -0.64
USP54-206ENST00000433394 AP1G2O75843 785 aa11.05□□□□□ -0.64
USP54-206ENST00000433394 KRTAP3-3Q9BYR6 98 aa11.05□□□□□ -0.64
USP54-206ENST00000433394 KRTAP3-2Q9BYR7 98 aa11.05□□□□□ -0.64
USP54-206ENST00000433394 NDUFV2P19404 249 aa11.04□□□□□ -0.64
USP54-206ENST00000433394 CCDC97Q96F63 343 aaPredicted RBP11.04□□□□□ -0.64
USP54-206ENST00000433394 LILRB3O75022 631 aa11.03□□□□□ -0.64
USP54-206ENST00000433394 FDX1P10109 184 aa11.03□□□□□ -0.64
USP54-206ENST00000433394 LAPTM4BQ86VI4 370 aa11.03□□□□□ -0.64
USP54-206ENST00000433394 SEPT9Q9UHD8 586 aaPredicted RBP11.03□□□□□ -0.64
USP54-206ENST00000433394 SOCS7O14512 581 aa11.02□□□□□ -0.65
USP54-206ENST00000433394 HOXA2O43364 376 aa11.02□□□□□ -0.65
USP54-206ENST00000433394 RNF40O75150 1001 aa11.02□□□□□ -0.65
USP54-206ENST00000433394 SNRKQ9NRH2 765 aa11.02□□□□□ -0.65
USP54-206ENST00000433394 HELBQ8NG08 1087 aaPredicted RBP11.01□□□□□ -0.65
USP54-206ENST00000433394 COG6Q9Y2V7 657 aa11.01□□□□□ -0.65
USP54-206ENST00000433394 ZNF330Q9Y3S2 320 aaPredicted RBP11.01□□□□□ -0.65
USP54-206ENST00000433394 QPCTQ16769 361 aa11□□□□□ -0.65
USP54-206ENST00000433394 KMT5BQ4FZB7 885 aa11□□□□□ -0.65
USP54-206ENST00000433394 STAC3Q96MF2 364 aa11□□□□□ -0.65
USP54-206ENST00000433394 SERPINA10Q9UK55 444 aa11□□□□□ -0.65
USP54-206ENST00000433394 ZNF777Q9ULD5 760 aaPredicted RBP11□□□□□ -0.65
USP54-206ENST00000433394 CCDC82Q8N4S0 544 aa10.99□□□□□ -0.65
USP54-206ENST00000433394 POM121Q96HA1 1249 aa10.99□□□□□ -0.65
USP54-206ENST00000433394 C1orf115Q9H7X2 142 aa10.99□□□□□ -0.65
USP54-206ENST00000433394 PCDHB15Q9Y5E8 787 aa10.99□□□□□ -0.65
USP54-206ENST00000433394 MTMR2Q13614 643 aa10.98□□□□□ -0.65
USP54-206ENST00000433394 ZNF687Q8N1G0 1237 aa10.98□□□□□ -0.65
USP54-206ENST00000433394 VPS9D1Q9Y2B5 631 aa10.98□□□□□ -0.65
USP54-206ENST00000433394 AXIN2Q9Y2T1 843 aa10.98□□□□□ -0.65
USP54-206ENST00000433394 HRCP23327 699 aa10.97□□□□□ -0.65
USP54-206ENST00000433394 SAMD7Q7Z3H4 446 aa10.97□□□□□ -0.65
USP54-206ENST00000433394 MRPL50Q8N5N7 158 aaKnown RBP10.97□□□□□ -0.65
USP54-206ENST00000433394 CFHP08603 1231 aa10.96□□□□□ -0.65
USP54-206ENST00000433394 SLC10A3P09131 477 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms