RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 RPRD2Q5VT52 1461 aaKnown RBP24.94■■□□□ 1.58
TTC28-202ENST00000431039 NWD1Q149M9 1564 aa24.93■■□□□ 1.58
TTC28-202ENST00000431039 BCANQ96GW7 911 aa24.93■■□□□ 1.58
TTC28-202ENST00000431039 SLC52A1Q9NWF4 448 aa24.93■■□□□ 1.58
TTC28-202ENST00000431039 UNC13BO14795 1591 aa24.93■■□□□ 1.58
TTC28-202ENST00000431039 ROBO1Q9Y6N7 1651 aa24.92■■□□□ 1.58
TTC28-202ENST00000431039 PROSER2Q86WR7 435 aaPredicted RBP24.91■■□□□ 1.58
TTC28-202ENST00000431039 TMEM131LA2VDJ0 1609 aa24.9■■□□□ 1.58
TTC28-202ENST00000431039 NKTRP30414 1462 aaKnown RBP24.89■■□□□ 1.57
TTC28-202ENST00000431039 CHD2O14647 1828 aaKnown RBP24.89■■□□□ 1.57
TTC28-202ENST00000431039 E9PCH4 1651 aa24.88■■□□□ 1.57
TTC28-202ENST00000431039 FAM135BQ49AJ0 1406 aa24.88■■□□□ 1.57
TTC28-202ENST00000431039 ZFYVE9O95405 1425 aa24.87■■□□□ 1.57
TTC28-202ENST00000431039 PCGF6Q9BYE7 350 aa24.87■■□□□ 1.57
TTC28-202ENST00000431039 RIMS2Q9UQ26 1411 aa24.86■■□□□ 1.57
TTC28-202ENST00000431039 PPP1R15AO75807 674 aaPredicted RBP24.85■■□□□ 1.57
TTC28-202ENST00000431039 PLEKHG1Q9ULL1 1385 aa24.83■■□□□ 1.57
TTC28-202ENST00000431039 IQGAP3Q86VI3 1631 aa24.83■■□□□ 1.56
TTC28-202ENST00000431039 CHGAP10645 457 aaKnown RBP24.82■■□□□ 1.56
TTC28-202ENST00000431039 MSH6P52701 1360 aa24.8■■□□□ 1.56
TTC28-202ENST00000431039 RGS17Q9UGC6 210 aaPredicted RBP24.8■■□□□ 1.56
TTC28-202ENST00000431039 PHLPP1O60346 1717 aa24.79■■□□□ 1.56
TTC28-202ENST00000431039 ITGAEP38570 1179 aa24.78■■□□□ 1.56
TTC28-202ENST00000431039 NUTM2DQ5VT03 806 aaPredicted RBP24.78■■□□□ 1.56
TTC28-202ENST00000431039 ROCK1Q13464 1354 aa24.78■■□□□ 1.56
TTC28-202ENST00000431039 HDGFP51858 240 aaKnown RBP24.77■■□□□ 1.56
TTC28-202ENST00000431039 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.72■■□□□ 1.55
TTC28-202ENST00000431039 SLAIN2Q9P270 581 aa24.72■■□□□ 1.55
TTC28-202ENST00000431039 DIP2AQ14689 1571 aa24.71■■□□□ 1.55
TTC28-202ENST00000431039 ADAMTS13Q76LX8 1427 aa24.71■■□□□ 1.55
TTC28-202ENST00000431039 NUP155O75694 1391 aa24.71■■□□□ 1.55
TTC28-202ENST00000431039 TBX22Q9Y458 520 aa24.71■■□□□ 1.55
TTC28-202ENST00000431039 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.69■■□□□ 1.54
TTC28-202ENST00000431039 C14orf37Q86TY3 774 aa24.69■■□□□ 1.54
TTC28-202ENST00000431039 SPHKAPQ2M3C7 1700 aa24.69■■□□□ 1.54
TTC28-202ENST00000431039 COL16A1Q07092 1604 aaPredicted RBP24.67■■□□□ 1.54
TTC28-202ENST00000431039 POTEAQ6S8J7 498 aa24.66■■□□□ 1.54
TTC28-202ENST00000431039 TRPM2O94759 1503 aa24.66■■□□□ 1.54
TTC28-202ENST00000431039 NCOA3Q9Y6Q9 1424 aa24.63■■□□□ 1.53
TTC28-202ENST00000431039 JCADQ9P266 1359 aa24.63■■□□□ 1.53
TTC28-202ENST00000431039 NRXN3Q9Y4C0 1643 aa24.62■■□□□ 1.53
TTC28-202ENST00000431039 PIK3R4Q99570 1358 aa24.62■■□□□ 1.53
TTC28-202ENST00000431039 SETD1AO15047 1707 aaKnown RBP24.61■■□□□ 1.53
TTC28-202ENST00000431039 PTPRUQ92729 1446 aa24.61■■□□□ 1.53
TTC28-202ENST00000431039 ATF3P18847 181 aa24.58■■□□□ 1.53
TTC28-202ENST00000431039 AMOTL2Q9Y2J4 779 aa24.58■■□□□ 1.53
TTC28-202ENST00000431039 HFM1A2PYH4 1435 aa24.58■■□□□ 1.53
TTC28-202ENST00000431039 XRN1Q8IZH2 1706 aaKnown RBP24.58■■□□□ 1.52
TTC28-202ENST00000431039 CADPS2Q86UW7 1296 aa24.57■■□□□ 1.52
TTC28-202ENST00000431039 C19orf44Q9H6X5 657 aa24.57■■□□□ 1.52
TTC28-202ENST00000431039 AHDC1Q5TGY3 1603 aaPredicted RBP24.57■■□□□ 1.52
TTC28-202ENST00000431039 SETBP1Q9Y6X0 1596 aa24.56■■□□□ 1.52
TTC28-202ENST00000431039 SETD5Q9C0A6 1442 aa24.55■■□□□ 1.52
TTC28-202ENST00000431039 CLTCL1P53675 1640 aa24.55■■□□□ 1.52
TTC28-202ENST00000431039 ZNF326Q5BKZ1 582 aaKnown RBP24.55■■□□□ 1.52
TTC28-202ENST00000431039 SHPRHQ149N8 1683 aa24.55■■□□□ 1.52
TTC28-202ENST00000431039 LRP6O75581 1613 aa24.54■■□□□ 1.52
TTC28-202ENST00000431039 NAIPQ13075 1403 aa24.54■■□□□ 1.52
TTC28-202ENST00000431039 HRCP23327 699 aa24.53■■□□□ 1.52
TTC28-202ENST00000431039 KIF1BO60333 1816 aa24.53■■□□□ 1.52
TTC28-202ENST00000431039 NEXMIFQ5QGS0 1516 aa24.5■■□□□ 1.51
TTC28-202ENST00000431039 MEX3CQ5U5Q3 659 aaKnown RBP24.49■■□□□ 1.51
TTC28-202ENST00000431039 METP08581 1390 aa24.48■■□□□ 1.51
TTC28-202ENST00000431039 SPATA31A6Q5VVP1 1343 aa24.48■■□□□ 1.51
TTC28-202ENST00000431039 BRINP3Q76B58 766 aa24.48■■□□□ 1.51
TTC28-202ENST00000431039 ASXL1Q8IXJ9 1541 aa24.46■■□□□ 1.51
TTC28-202ENST00000431039 DCCP43146 1447 aa24.46■■□□□ 1.51
TTC28-202ENST00000431039 RAB3GAP2Q9H2M9 1393 aa24.46■■□□□ 1.51
TTC28-202ENST00000431039 NALCNQ8IZF0 1738 aa24.46■■□□□ 1.51
TTC28-202ENST00000431039 NHSL1Q5SYE7 1610 aa24.45■■□□□ 1.5
TTC28-202ENST00000431039 ACIN1Q9UKV3 1341 aaKnown RBP24.44■■□□□ 1.5
TTC28-202ENST00000431039 MST1RQ04912 1400 aa24.44■■□□□ 1.5
TTC28-202ENST00000431039 NUTM2BA6NNL0 878 aaPredicted RBP24.4■■□□□ 1.5
TTC28-202ENST00000431039 NUTM2EB1AL46 878 aaPredicted RBP24.4■■□□□ 1.5
TTC28-202ENST00000431039 NUTM2AQ8IVF1 878 aaPredicted RBP24.4■■□□□ 1.5
TTC28-202ENST00000431039 ADGRL3Q9HAR2 1447 aa24.4■■□□□ 1.5
TTC28-202ENST00000431039 ZNF772Q68DY9 489 aaPredicted RBP24.38■■□□□ 1.49
TTC28-202ENST00000431039 TRIM52Q96A61 297 aa24.37■■□□□ 1.49
TTC28-202ENST00000431039 DDX17Q92841 729 aaKnown RBP24.35■■□□□ 1.49
TTC28-202ENST00000431039 PPLO60437 1756 aa24.34■■□□□ 1.49
TTC28-202ENST00000431039 PTCH1Q13635 1447 aa24.29■■□□□ 1.48
TTC28-202ENST00000431039 LRRC59Q96AG4 307 aaKnown RBP24.29■■□□□ 1.48
TTC28-202ENST00000431039 AFF2P51816 1311 aa24.29■■□□□ 1.48
TTC28-202ENST00000431039 C1orf167Q5SNV9 1468 aa24.28■■□□□ 1.48
TTC28-202ENST00000431039 VGFO15240 615 aaPredicted RBP24.28■■□□□ 1.48
TTC28-202ENST00000431039 SLC4A1APQ9BWU0 796 aaKnown RBP24.28■■□□□ 1.48
TTC28-202ENST00000431039 ROBO2Q9HCK4 1378 aa24.28■■□□□ 1.48
TTC28-202ENST00000431039 RXRBP28702 533 aa24.27■■□□□ 1.48
TTC28-202ENST00000431039 PNPLA6Q8IY17 1366 aa24.27■■□□□ 1.48
TTC28-202ENST00000431039 LAMC1P11047 1609 aa24.24■■□□□ 1.47
TTC28-202ENST00000431039 C8orf37Q96NL8 207 aa24.24■■□□□ 1.47
TTC28-202ENST00000431039 UPF1Q92900 1129 aaKnown RBP eCLIP24.23■■□□□ 1.47
TTC28-202ENST00000431039 RPGRIP1LQ68CZ1 1315 aa24.22■■□□□ 1.47
TTC28-202ENST00000431039 FOXD1Q16676 465 aa24.22■■□□□ 1.47
TTC28-202ENST00000431039 DHX57Q6P158 1386 aaKnown RBP24.21■■□□□ 1.47
TTC28-202ENST00000431039 CDK12Q9NYV4 1490 aaPredicted RBP24.2■■□□□ 1.47
TTC28-202ENST00000431039 ORAI2Q96SN7 254 aa24.2■■□□□ 1.46
TTC28-202ENST00000431039 PRAG1Q86YV5 1406 aa24.19■■□□□ 1.46
TTC28-202ENST00000431039 MPHOSPH9Q99550 1183 aa24.19■■□□□ 1.46
TTC28-202ENST00000431039 ADAMTS2O95450 1211 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms