RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 ECM2O94769 699 aaPredicted RBP6.71□□□□□ -1.33
PTPN4-203ENST00000430976 ZNF662Q6ZS27 426 aa6.71□□□□□ -1.33
PTPN4-203ENST00000430976 TRIM52Q96A61 297 aa6.71□□□□□ -1.33
PTPN4-203ENST00000430976 RAB11FIP3O75154 756 aa6.71□□□□□ -1.34
PTPN4-203ENST00000430976 MKRN3Q13064 507 aaKnown RBP6.71□□□□□ -1.34
PTPN4-203ENST00000430976 IRF5Q13568 498 aa6.71□□□□□ -1.34
PTPN4-203ENST00000430976 RNF217Q8TC41 542 aa6.71□□□□□ -1.34
PTPN4-203ENST00000430976 TRIM6-TRIM34B2RNG4 842 aa6.71□□□□□ -1.34
PTPN4-203ENST00000430976 NBPF9Q3BBW0 867 aa6.71□□□□□ -1.34
PTPN4-203ENST00000430976 ZKSCAN2Q63HK3 967 aa6.71□□□□□ -1.34
PTPN4-203ENST00000430976 TRIM34Q9BYJ4 488 aa6.71□□□□□ -1.34
PTPN4-203ENST00000430976 SUDS3Q9H7L9 328 aaPredicted RBP6.71□□□□□ -1.34
PTPN4-203ENST00000430976 RPAINQ86UA6 219 aa6.7□□□□□ -1.34
PTPN4-203ENST00000430976 OTUD6BQ8N6M0 293 aa6.7□□□□□ -1.34
PTPN4-203ENST00000430976 KLHL42Q9P2K6 505 aa6.7□□□□□ -1.34
PTPN4-203ENST00000430976 WWC3Q9ULE0 1092 aa6.7□□□□□ -1.34
PTPN4-203ENST00000430976 EPB41L2O43491 1005 aaKnown RBP6.7□□□□□ -1.34
PTPN4-203ENST00000430976 MECOMQ03112 1051 aa6.7□□□□□ -1.34
PTPN4-203ENST00000430976 CXorf38Q8TB03 319 aa6.7□□□□□ -1.34
PTPN4-203ENST00000430976 CARNS1A5YM72 827 aa6.69□□□□□ -1.34
PTPN4-203ENST00000430976 TSHZ1Q6ZSZ6 1077 aa6.69□□□□□ -1.34
PTPN4-203ENST00000430976 SMAP1Q8IYB5 467 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-203ENST00000430976 MS4A1P11836 297 aa6.69□□□□□ -1.34
PTPN4-203ENST00000430976 CCDC125Q86Z20 511 aa6.69□□□□□ -1.34
PTPN4-203ENST00000430976 CEP120Q8N960 986 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 SPOCK3Q9BQ16 436 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 CCDC34Q96HJ3 373 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 DYTNA2CJ06 578 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 RGL2O15211 777 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 KRBA2Q6ZNG9 492 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 RMI1Q9H9A7 625 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.68□□□□□ -1.342e-6■■■■■ 96.1
PTPN4-203ENST00000430976 PSEN1P49768 467 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 BIRC2Q13490 618 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 MAP7D2Q96T17 732 aa6.68□□□□□ -1.34
PTPN4-203ENST00000430976 BAZ1BQ9UIG0 1483 aaKnown RBP6.67□□□□□ -1.34
PTPN4-203ENST00000430976 SCP2P22307 547 aa6.67□□□□□ -1.34
PTPN4-203ENST00000430976 MMP14P50281 582 aa6.67□□□□□ -1.34
PTPN4-203ENST00000430976 RHBDL3P58872 404 aa6.67□□□□□ -1.34
PTPN4-203ENST00000430976 FOXD4L1Q9NU39 408 aa6.67□□□□□ -1.34
PTPN4-203ENST00000430976 RBM28Q9NW13 759 aaKnown RBP6.67□□□□□ -1.34
PTPN4-203ENST00000430976 BIN2Q9UBW5 565 aaPredicted RBP6.67□□□□□ -1.34
PTPN4-203ENST00000430976 G3BP2Q9UN86 482 aaKnown RBP6.67□□□□□ -1.34
PTPN4-203ENST00000430976 GOLGA6L6A8MZA4 724 aa6.67□□□□□ -1.34
PTPN4-203ENST00000430976 U2AF1L5P0DN76 240 aaPredicted RBP6.67□□□□□ -1.34
PTPN4-203ENST00000430976 U2AF1Q01081 240 aaKnown RBP eCLIP6.67□□□□□ -1.34
PTPN4-203ENST00000430976 SATB1Q01826 763 aa6.67□□□□□ -1.34
PTPN4-203ENST00000430976 SF3A1Q15459 793 aaKnown RBP6.67□□□□□ -1.34
PTPN4-203ENST00000430976 CCDC96Q2M329 555 aa6.67□□□□□ -1.34
PTPN4-203ENST00000430976 TMC1Q8TDI8 760 aa6.67□□□□□ -1.34
PTPN4-203ENST00000430976 MTA3Q9BTC8 594 aa6.67□□□□□ -1.34
PTPN4-203ENST00000430976 HIRIP3Q9BW71 556 aaPredicted RBP6.66□□□□□ -1.34
PTPN4-203ENST00000430976 GTF2A1P52655 376 aaPredicted RBP6.66□□□□□ -1.34
PTPN4-203ENST00000430976 FRAT1Q92837 279 aaPredicted RBP6.66□□□□□ -1.34
PTPN4-203ENST00000430976 TPM2P07951 284 aa6.66□□□□□ -1.34
PTPN4-203ENST00000430976 MYBPC2Q14324 1141 aa6.66□□□□□ -1.34
PTPN4-203ENST00000430976 PDILTQ8N807 584 aa6.66□□□□□ -1.34
PTPN4-203ENST00000430976 DCAF1Q9Y4B6 1507 aa6.66□□□□□ -1.34
PTPN4-203ENST00000430976 MYCBPQ99417 103 aaPredicted RBP6.65□□□□□ -1.34
PTPN4-203ENST00000430976 TOMM22Q9NS69 142 aa6.65□□□□□ -1.34
PTPN4-203ENST00000430976 GOLGA6L22H0YM25 854 aa6.65□□□□□ -1.35
PTPN4-203ENST00000430976 SKAP1Q86WV1 359 aa6.65□□□□□ -1.35
PTPN4-203ENST00000430976 TRERF1Q96PN7 1200 aa6.65□□□□□ -1.35
PTPN4-203ENST00000430976 METTL14Q9HCE5 456 aaKnown RBP6.65□□□□□ -1.35
PTPN4-203ENST00000430976 ABCC9O60706 1549 aa6.65□□□□□ -1.35
PTPN4-203ENST00000430976 IPO9Q96P70 1041 aaKnown RBP6.65□□□□□ -1.35
PTPN4-203ENST00000430976 NEFHP12036 1026 aa6.64□□□□□ -1.35
PTPN4-203ENST00000430976 TTC30BQ8N4P2 665 aa6.64□□□□□ -1.35
PTPN4-203ENST00000430976 CREB3O43889 395 aa6.64□□□□□ -1.35
PTPN4-203ENST00000430976 KCNA1Q09470 495 aa6.64□□□□□ -1.35
PTPN4-203ENST00000430976 LONRF3Q496Y0 759 aa6.64□□□□□ -1.35
PTPN4-203ENST00000430976 TPM3P06753 285 aa6.64□□□□□ -1.35
PTPN4-203ENST00000430976 FAM160A1Q05DH4 1040 aa6.64□□□□□ -1.35
PTPN4-203ENST00000430976 FAM161AQ3B820 660 aa6.64□□□□□ -1.35
PTPN4-203ENST00000430976 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.64□□□□□ -1.35
PTPN4-203ENST00000430976 H0YHG0 523 aa6.63□□□□□ -1.35
PTPN4-203ENST00000430976 VGFO15240 615 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-203ENST00000430976 SARNPP82979 210 aaKnown RBP6.63□□□□□ -1.35
PTPN4-203ENST00000430976 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.63□□□□□ -1.35
PTPN4-203ENST00000430976 B4GALNT3Q6L9W6 998 aa6.63□□□□□ -1.35
PTPN4-203ENST00000430976 ARL10Q8N8L6 244 aa6.63□□□□□ -1.35
PTPN4-203ENST00000430976 USP5P45974 858 aa6.63□□□□□ -1.35
PTPN4-203ENST00000430976 GOPCQ9HD26 462 aa6.63□□□□□ -1.35
PTPN4-203ENST00000430976 KIF20AO95235 890 aa6.62□□□□□ -1.35
PTPN4-203ENST00000430976 LRCH2Q5VUJ6 765 aa6.62□□□□□ -1.35
PTPN4-203ENST00000430976 CC2D1AQ6P1N0 951 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-203ENST00000430976 PABPN1Q86U42 306 aaKnown RBP eCLIP6.62□□□□□ -1.35
PTPN4-203ENST00000430976 CEP83Q9Y592 693 aa6.62□□□□□ -1.35
PTPN4-203ENST00000430976 MLECQ14165 292 aa6.62□□□□□ -1.35
PTPN4-203ENST00000430976 INF2Q27J81 1249 aa6.62□□□□□ -1.35
PTPN4-203ENST00000430976 GOLGA6L1Q8N7Z2 621 aa6.62□□□□□ -1.35
PTPN4-203ENST00000430976 MORC4Q8TE76 937 aa6.62□□□□□ -1.35
PTPN4-203ENST00000430976 CCDC94Q9BW85 323 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-203ENST00000430976 TMCO5BA8MYB1 307 aa6.61□□□□□ -1.35
PTPN4-203ENST00000430976 KCNH8Q96L42 1107 aa6.61□□□□□ -1.35
PTPN4-203ENST00000430976 TESPA1A2RU30 521 aaPredicted RBP6.61□□□□□ -1.35
PTPN4-203ENST00000430976 SF3B2Q13435 895 aaKnown RBP6.61□□□□□ -1.35
PTPN4-203ENST00000430976 PAF1Q8N7H5 531 aa6.61□□□□□ -1.35
PTPN4-203ENST00000430976 LRRC27Q9C0I9 530 aa6.61□□□□□ -1.35
PTPN4-203ENST00000430976 IQSEC3Q9UPP2 1182 aaPredicted RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms