RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ADGRB3O60242 1522 aa18.38■□□□□ 0.53
USP40-205ENST00000430158 THEMISQ8N1K5 641 aaPredicted RBP18.36■□□□□ 0.53
USP40-205ENST00000430158 SLIT1O75093 1534 aa18.35■□□□□ 0.53
USP40-205ENST00000430158 DHX57Q6P158 1386 aaKnown RBP18.34■□□□□ 0.53
USP40-205ENST00000430158 TMEM2Q9UHN6 1383 aa18.32■□□□□ 0.52
USP40-205ENST00000430158 KIF1BO60333 1816 aa18.32■□□□□ 0.52
USP40-205ENST00000430158 ZFYVE9O95405 1425 aa18.32■□□□□ 0.52
USP40-205ENST00000430158 NEURL4Q96JN8 1562 aa18.31■□□□□ 0.52
USP40-205ENST00000430158 SPATA31E1Q6ZUB1 1445 aa18.31■□□□□ 0.52
USP40-205ENST00000430158 LTKP29376 864 aa18.3■□□□□ 0.52
USP40-205ENST00000430158 NCKAP5LQ9HCH0 1330 aa18.29■□□□□ 0.52
USP40-205ENST00000430158 CCDC144AA2RUR9 1427 aa18.29■□□□□ 0.52
USP40-205ENST00000430158 POLR1AO95602 1720 aaPredicted RBP18.29■□□□□ 0.52
USP40-205ENST00000430158 MED14O60244 1454 aa18.28■□□□□ 0.52
USP40-205ENST00000430158 STAG3Q9UJ98 1225 aa18.27■□□□□ 0.52
USP40-205ENST00000430158 ANKLE2Q86XL3 938 aa18.26■□□□□ 0.51
USP40-205ENST00000430158 SCAF11Q99590 1463 aaKnown RBP18.26■□□□□ 0.51
USP40-205ENST00000430158 RIMS2Q9UQ26 1411 aa18.25■□□□□ 0.51
USP40-205ENST00000430158 CHGAP10645 457 aaKnown RBP18.25■□□□□ 0.51
USP40-205ENST00000430158 NEXMIFQ5QGS0 1516 aa18.24■□□□□ 0.51
USP40-205ENST00000430158 TXNDC2Q86VQ3 553 aa18.24■□□□□ 0.51
USP40-205ENST00000430158 NPHP4O75161 1426 aaPredicted RBP18.22■□□□□ 0.51
USP40-205ENST00000430158 PPLO60437 1756 aa18.21■□□□□ 0.51
USP40-205ENST00000430158 IFT172Q9UG01 1749 aa18.2■□□□□ 0.5
USP40-205ENST00000430158 RPGRIP1LQ68CZ1 1315 aa18.2■□□□□ 0.5
USP40-205ENST00000430158 IQGAP1P46940 1657 aa18.19■□□□□ 0.5
USP40-205ENST00000430158 EID1Q9Y6B2 187 aa18.19■□□□□ 0.5
USP40-205ENST00000430158 PLEKHG1Q9ULL1 1385 aa18.18■□□□□ 0.5
USP40-205ENST00000430158 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.18■□□□□ 0.5
USP40-205ENST00000430158 U3KPZ7 1027 aaPredicted RBP18.18■□□□□ 0.5
USP40-205ENST00000430158 NUTM2DQ5VT03 806 aaPredicted RBP18.17■□□□□ 0.5
USP40-205ENST00000430158 NRXN3Q9Y4C0 1643 aa18.16■□□□□ 0.5
USP40-205ENST00000430158 HDGFP51858 240 aaKnown RBP18.16■□□□□ 0.5
USP40-205ENST00000430158 RGL3Q3MIN7 710 aa18.16■□□□□ 0.5
USP40-205ENST00000430158 ZNF326Q5BKZ1 582 aaKnown RBP18.16■□□□□ 0.5
USP40-205ENST00000430158 SIN3AQ96ST3 1273 aa18.16■□□□□ 0.5
USP40-205ENST00000430158 ADAMTS13Q76LX8 1427 aa18.15■□□□□ 0.5
USP40-205ENST00000430158 SETBP1Q9Y6X0 1596 aa18.13■□□□□ 0.49
USP40-205ENST00000430158 NRXN1Q9ULB1 1477 aa18.13■□□□□ 0.49
USP40-205ENST00000430158 ADGRF5Q8IZF2 1346 aa18.12■□□□□ 0.49
USP40-205ENST00000430158 VGFO15240 615 aaPredicted RBP18.11■□□□□ 0.49
USP40-205ENST00000430158 MYOM2P54296 1465 aa18.1■□□□□ 0.49
USP40-205ENST00000430158 PPP1R15AO75807 674 aaPredicted RBP18.1■□□□□ 0.49
USP40-205ENST00000430158 TBX22Q9Y458 520 aa18.1■□□□□ 0.49
USP40-205ENST00000430158 STRCP1A6NGW2 1772 aa18.09■□□□□ 0.49
USP40-205ENST00000430158 SETD1AO15047 1707 aaKnown RBP18.09■□□□□ 0.49
USP40-205ENST00000430158 LTBP4Q8N2S1 1624 aa18.09■□□□□ 0.49
USP40-205ENST00000430158 SLC26A8Q96RN1 970 aa18.09■□□□□ 0.49
USP40-205ENST00000430158 ZNF335Q9H4Z2 1342 aaPredicted RBP18.07■□□□□ 0.48
USP40-205ENST00000430158 CLSPNQ9HAW4 1339 aa18.07■□□□□ 0.48
USP40-205ENST00000430158 DIP2AQ14689 1571 aa18.07■□□□□ 0.48
USP40-205ENST00000430158 PIK3C2GO75747 1445 aa18.06■□□□□ 0.48
USP40-205ENST00000430158 CHD2O14647 1828 aaKnown RBP18.06■□□□□ 0.48
USP40-205ENST00000430158 ALKQ9UM73 1620 aa18.05■□□□□ 0.48
USP40-205ENST00000430158 DSG3P32926 999 aa18.05■□□□□ 0.48
USP40-205ENST00000430158 NEUROD1Q13562 356 aa18.05■□□□□ 0.48
USP40-205ENST00000430158 DCAF11Q8TEB1 546 aa18.05■□□□□ 0.48
USP40-205ENST00000430158 L3MBTL2Q969R5 705 aa18.05■□□□□ 0.48
USP40-205ENST00000430158 STAC3Q96MF2 364 aa18.05■□□□□ 0.48
USP40-205ENST00000430158 SPINK5Q9NQ38 1064 aaPredicted RBP18.05■□□□□ 0.48
USP40-205ENST00000430158 METP08581 1390 aa18.04■□□□□ 0.48
USP40-205ENST00000430158 PTPRUQ92729 1446 aa18.03■□□□□ 0.48
USP40-205ENST00000430158 PIK3R4Q99570 1358 aa18.03■□□□□ 0.48
USP40-205ENST00000430158 NWD1Q149M9 1564 aa18.02■□□□□ 0.48
USP40-205ENST00000430158 C14orf93Q9H972 538 aaKnown RBP18.02■□□□□ 0.48
USP40-205ENST00000430158 KCNA6P17658 529 aa18.01■□□□□ 0.47
USP40-205ENST00000430158 KDM2AQ9Y2K7 1162 aa18.01■□□□□ 0.47
USP40-205ENST00000430158 ASXL1Q8IXJ9 1541 aa18■□□□□ 0.47
USP40-205ENST00000430158 BCANQ96GW7 911 aa18■□□□□ 0.47
USP40-205ENST00000430158 PRAG1Q86YV5 1406 aa17.98■□□□□ 0.47
USP40-205ENST00000430158 XRN1Q8IZH2 1706 aaKnown RBP17.98■□□□□ 0.47
USP40-205ENST00000430158 CFAP70Q5T0N1 1121 aa17.98■□□□□ 0.47
USP40-205ENST00000430158 CCER1Q8TC90 406 aaPredicted RBP17.97■□□□□ 0.47
USP40-205ENST00000430158 CPS1P31327 1500 aa17.97■□□□□ 0.47
USP40-205ENST00000430158 ADGRB1O14514 1584 aa17.96■□□□□ 0.47
USP40-205ENST00000430158 XIRP1Q702N8 1843 aaKnown RBP17.96■□□□□ 0.47
USP40-205ENST00000430158 POTEHQ6S545 545 aa17.96■□□□□ 0.47
USP40-205ENST00000430158 LAMC1P11047 1609 aa17.96■□□□□ 0.47
USP40-205ENST00000430158 LRRC7Q96NW7 1537 aa17.96■□□□□ 0.47
USP40-205ENST00000430158 CAPN15O75808 1086 aa17.95■□□□□ 0.46
USP40-205ENST00000430158 KIAA1210Q9ULL0 1709 aa17.95■□□□□ 0.46
USP40-205ENST00000430158 NKTRP30414 1462 aaKnown RBP17.95■□□□□ 0.46
USP40-205ENST00000430158 AMOTL2Q9Y2J4 779 aa17.94■□□□□ 0.46
USP40-205ENST00000430158 NBPF8Q3BBV2 869 aa17.93■□□□□ 0.46
USP40-205ENST00000430158 TONSLQ96HA7 1378 aa17.92■□□□□ 0.46
USP40-205ENST00000430158 TMEM132EQ6IEE7 984 aa17.92■□□□□ 0.46
USP40-205ENST00000430158 CERKQ8TCT0 537 aa17.92■□□□□ 0.46
USP40-205ENST00000430158 LRPPRCP42704 1394 aaKnown RBP17.91■□□□□ 0.46
USP40-205ENST00000430158 TECPR2O15040 1411 aa17.91■□□□□ 0.46
USP40-205ENST00000430158 TIMELESSQ9UNS1 1208 aa17.91■□□□□ 0.46
USP40-205ENST00000430158 ABCC11Q96J66 1382 aa17.91■□□□□ 0.46
USP40-205ENST00000430158 YTHDC2Q9H6S0 1430 aaKnown RBP17.89■□□□□ 0.46
USP40-205ENST00000430158 KNDC1Q76NI1 1749 aa17.89■□□□□ 0.46
USP40-205ENST00000430158 IQSEC2Q5JU85 1478 aa17.89■□□□□ 0.45
USP40-205ENST00000430158 NBPF1Q3BBV0 1214 aa17.89■□□□□ 0.45
USP40-205ENST00000430158 TRPM1Q7Z4N2 1603 aa17.89■□□□□ 0.45
USP40-205ENST00000430158 ROBO2Q9HCK4 1378 aa17.89■□□□□ 0.45
USP40-205ENST00000430158 PTCH1Q13635 1447 aa17.89■□□□□ 0.45
USP40-205ENST00000430158 TMEM94Q12767 1356 aa17.88■□□□□ 0.45
USP40-205ENST00000430158 PROSER2Q86WR7 435 aaPredicted RBP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms