RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 ZFYVE9O95405 1425 aa26.22■■□□□ 1.79
CPSF4-203ENST00000430038 NUP155O75694 1391 aa26.2■■□□□ 1.78
CPSF4-203ENST00000430038 RBM33Q96EV2 1170 aaKnown RBP26.18■■□□□ 1.78
CPSF4-203ENST00000430038 RRBP1Q9P2E9 1410 aaKnown RBP26.16■■□□□ 1.78
CPSF4-203ENST00000430038 KCNA6P17658 529 aa26.16■■□□□ 1.78
CPSF4-203ENST00000430038 RIMS2Q9UQ26 1411 aa26.15■■□□□ 1.78
CPSF4-203ENST00000430038 NUTM2DQ5VT03 806 aaPredicted RBP26.14■■□□□ 1.78
CPSF4-203ENST00000430038 TMEM94Q12767 1356 aa26.12■■□□□ 1.77
CPSF4-203ENST00000430038 CHGAP10645 457 aaKnown RBP26.12■■□□□ 1.77
CPSF4-203ENST00000430038 CHD2O14647 1828 aaKnown RBP26.11■■□□□ 1.77
CPSF4-203ENST00000430038 PLEKHG1Q9ULL1 1385 aa26.1■■□□□ 1.77
CPSF4-203ENST00000430038 NWD1Q149M9 1564 aa26.1■■□□□ 1.77
CPSF4-203ENST00000430038 BCANQ96GW7 911 aa26.09■■□□□ 1.77
CPSF4-203ENST00000430038 MED1Q15648 1581 aaPredicted RBP26.08■■□□□ 1.77
CPSF4-203ENST00000430038 PROSER2Q86WR7 435 aaPredicted RBP26.08■■□□□ 1.77
CPSF4-203ENST00000430038 NAIPQ13075 1403 aa26.06■■□□□ 1.76
CPSF4-203ENST00000430038 ADAMTS13Q76LX8 1427 aa26.05■■□□□ 1.76
CPSF4-203ENST00000430038 SPHKAPQ2M3C7 1700 aa26.05■■□□□ 1.76
CPSF4-203ENST00000430038 PPP1R15AO75807 674 aaPredicted RBP26.03■■□□□ 1.76
CPSF4-203ENST00000430038 SOCS7O14512 581 aa26.02■■□□□ 1.76
CPSF4-203ENST00000430038 TBX22Q9Y458 520 aa26.02■■□□□ 1.76
CPSF4-203ENST00000430038 NKTRP30414 1462 aaKnown RBP26.01■■□□□ 1.75
CPSF4-203ENST00000430038 HDGFP51858 240 aaKnown RBP25.99■■□□□ 1.75
CPSF4-203ENST00000430038 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.99■■□□□ 1.75
CPSF4-203ENST00000430038 FAM135BQ49AJ0 1406 aa25.98■■□□□ 1.75
CPSF4-203ENST00000430038 CLTCL1P53675 1640 aa25.96■■□□□ 1.75
CPSF4-203ENST00000430038 ROBO1Q9Y6N7 1651 aa25.96■■□□□ 1.75
CPSF4-203ENST00000430038 NRXN3Q9Y4C0 1643 aa25.96■■□□□ 1.75
CPSF4-203ENST00000430038 PTPRUQ92729 1446 aa25.95■■□□□ 1.74
CPSF4-203ENST00000430038 HFM1A2PYH4 1435 aa25.92■■□□□ 1.74
CPSF4-203ENST00000430038 DIP2AQ14689 1571 aa25.9■■□□□ 1.74
CPSF4-203ENST00000430038 MSH6P52701 1360 aa25.89■■□□□ 1.74
CPSF4-203ENST00000430038 TRPM2O94759 1503 aa25.88■■□□□ 1.73
CPSF4-203ENST00000430038 SLAIN2Q9P270 581 aa25.88■■□□□ 1.73
CPSF4-203ENST00000430038 AMOTL2Q9Y2J4 779 aa25.87■■□□□ 1.73
CPSF4-203ENST00000430038 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.86■■□□□ 1.73
CPSF4-203ENST00000430038 ZNF326Q5BKZ1 582 aaKnown RBP25.86■■□□□ 1.73
CPSF4-203ENST00000430038 TRIM52Q96A61 297 aa25.86■■□□□ 1.73
CPSF4-203ENST00000430038 NEXMIFQ5QGS0 1516 aa25.86■■□□□ 1.73
CPSF4-203ENST00000430038 KIF1BO60333 1816 aa25.86■■□□□ 1.73
CPSF4-203ENST00000430038 SETBP1Q9Y6X0 1596 aa25.86■■□□□ 1.73
CPSF4-203ENST00000430038 PIK3R4Q99570 1358 aa25.85■■□□□ 1.73
CPSF4-203ENST00000430038 RGS17Q9UGC6 210 aaPredicted RBP25.85■■□□□ 1.73
CPSF4-203ENST00000430038 METP08581 1390 aa25.83■■□□□ 1.73
CPSF4-203ENST00000430038 XRN1Q8IZH2 1706 aaKnown RBP25.82■■□□□ 1.72
CPSF4-203ENST00000430038 NCOA3Q9Y6Q9 1424 aa25.81■■□□□ 1.72
CPSF4-203ENST00000430038 FOXD1Q16676 465 aa25.81■■□□□ 1.72
CPSF4-203ENST00000430038 SLC4A1APQ9BWU0 796 aaKnown RBP25.79■■□□□ 1.72
CPSF4-203ENST00000430038 PHLPP1O60346 1717 aa25.79■■□□□ 1.72
CPSF4-203ENST00000430038 PHF23Q9BUL5 403 aaPredicted RBP25.78■■□□□ 1.72
CPSF4-203ENST00000430038 C19orf44Q9H6X5 657 aa25.78■■□□□ 1.72
CPSF4-203ENST00000430038 C14orf37Q86TY3 774 aa25.76■■□□□ 1.71
CPSF4-203ENST00000430038 SETD1AO15047 1707 aaKnown RBP25.74■■□□□ 1.71
CPSF4-203ENST00000430038 COL16A1Q07092 1604 aaPredicted RBP25.74■■□□□ 1.71
CPSF4-203ENST00000430038 PPLO60437 1756 aa25.71■■□□□ 1.71
CPSF4-203ENST00000430038 CADPS2Q86UW7 1296 aa25.7■■□□□ 1.7
CPSF4-203ENST00000430038 ATF3P18847 181 aa25.69■■□□□ 1.7
CPSF4-203ENST00000430038 BRINP3Q76B58 766 aa25.67■■□□□ 1.7
CPSF4-203ENST00000430038 POTEAQ6S8J7 498 aa25.66■■□□□ 1.7
CPSF4-203ENST00000430038 MPHOSPH9Q99550 1183 aa25.66■■□□□ 1.7
CPSF4-203ENST00000430038 NALCNQ8IZF0 1738 aa25.66■■□□□ 1.7
CPSF4-203ENST00000430038 AHDC1Q5TGY3 1603 aaPredicted RBP25.65■■□□□ 1.7
CPSF4-203ENST00000430038 VGFO15240 615 aaPredicted RBP25.64■■□□□ 1.7
CPSF4-203ENST00000430038 JCADQ9P266 1359 aa25.64■■□□□ 1.69
CPSF4-203ENST00000430038 MST1RQ04912 1400 aa25.63■■□□□ 1.69
CPSF4-203ENST00000430038 RPGRIP1LQ68CZ1 1315 aa25.63■■□□□ 1.69
CPSF4-203ENST00000430038 DCCP43146 1447 aa25.62■■□□□ 1.69
CPSF4-203ENST00000430038 ROBO2Q9HCK4 1378 aa25.61■■□□□ 1.69
CPSF4-203ENST00000430038 LRP6O75581 1613 aa25.6■■□□□ 1.69
CPSF4-203ENST00000430038 SPATA31E1Q6ZUB1 1445 aa25.6■■□□□ 1.69
CPSF4-203ENST00000430038 ADGRL3Q9HAR2 1447 aa25.6■■□□□ 1.69
CPSF4-203ENST00000430038 ADGRF5Q8IZF2 1346 aa25.6■■□□□ 1.69
CPSF4-203ENST00000430038 DDX17Q92841 729 aaKnown RBP25.59■■□□□ 1.69
CPSF4-203ENST00000430038 ASXL1Q8IXJ9 1541 aa25.58■■□□□ 1.69
CPSF4-203ENST00000430038 RGL3Q3MIN7 710 aa25.58■■□□□ 1.69
CPSF4-203ENST00000430038 IFT172Q9UG01 1749 aa25.57■■□□□ 1.68
CPSF4-203ENST00000430038 CCDC144AA2RUR9 1427 aa25.55■■□□□ 1.68
CPSF4-203ENST00000430038 SHPRHQ149N8 1683 aa25.55■■□□□ 1.68
CPSF4-203ENST00000430038 NHSL1Q5SYE7 1610 aa25.55■■□□□ 1.68
CPSF4-203ENST00000430038 PTCH1Q13635 1447 aa25.54■■□□□ 1.68
CPSF4-203ENST00000430038 SETD5Q9C0A6 1442 aa25.54■■□□□ 1.68
CPSF4-203ENST00000430038 PRAG1Q86YV5 1406 aa25.52■■□□□ 1.68
CPSF4-203ENST00000430038 C1orf167Q5SNV9 1468 aa25.49■■□□□ 1.67
CPSF4-203ENST00000430038 SPATA31A6Q5VVP1 1343 aa25.49■■□□□ 1.67
CPSF4-203ENST00000430038 ORAI2Q96SN7 254 aa25.48■■□□□ 1.67
CPSF4-203ENST00000430038 RAB3GAP2Q9H2M9 1393 aa25.47■■□□□ 1.67
CPSF4-203ENST00000430038 TMEM132EQ6IEE7 984 aa25.46■■□□□ 1.67
CPSF4-203ENST00000430038 NUTM2BA6NNL0 878 aaPredicted RBP25.44■■□□□ 1.66
CPSF4-203ENST00000430038 NUTM2EB1AL46 878 aaPredicted RBP25.44■■□□□ 1.66
CPSF4-203ENST00000430038 WAPLQ7Z5K2 1190 aa25.44■■□□□ 1.66
CPSF4-203ENST00000430038 NUTM2AQ8IVF1 878 aaPredicted RBP25.44■■□□□ 1.66
CPSF4-203ENST00000430038 STK26Q9P289 416 aa25.43■■□□□ 1.66
CPSF4-203ENST00000430038 ANKRD30BQ9BXX2 1392 aa25.43■■□□□ 1.66
CPSF4-203ENST00000430038 LAMC1P11047 1609 aa25.42■■□□□ 1.66
CPSF4-203ENST00000430038 PIK3C2GO75747 1445 aa25.42■■□□□ 1.66
CPSF4-203ENST00000430038 PLEKHH1Q9ULM0 1364 aa25.41■■□□□ 1.66
CPSF4-203ENST00000430038 LRRC59Q96AG4 307 aaKnown RBP25.4■■□□□ 1.66
CPSF4-203ENST00000430038 MEX3CQ5U5Q3 659 aaKnown RBP25.39■■□□□ 1.66
CPSF4-203ENST00000430038 PNPLA6Q8IY17 1366 aa25.39■■□□□ 1.65
CPSF4-203ENST00000430038 TECPR2O15040 1411 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms