RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 CFAP65Q6ZU64 1925 aaKnown RBP13.75□□□□□ -0.21
SMC1A-203ENST00000428014 PPARGC1BQ86YN6 1023 aaKnown RBP13.75□□□□□ -0.21
SMC1A-203ENST00000428014 EID1Q9Y6B2 187 aa13.75□□□□□ -0.21
SMC1A-203ENST00000428014 NCKAP5LQ9HCH0 1330 aa13.74□□□□□ -0.21
SMC1A-203ENST00000428014 IQGAP1P46940 1657 aa13.74□□□□□ -0.21
SMC1A-203ENST00000428014 SLC4A2P04920 1241 aa13.73□□□□□ -0.21
SMC1A-203ENST00000428014 ITGAEP38570 1179 aa13.72□□□□□ -0.21
SMC1A-203ENST00000428014 ZFYVE9O95405 1425 aa13.72□□□□□ -0.21
SMC1A-203ENST00000428014 TMEM131LA2VDJ0 1609 aa13.72□□□□□ -0.21
SMC1A-203ENST00000428014 TRPM2O94759 1503 aa13.71□□□□□ -0.21
SMC1A-203ENST00000428014 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.71□□□□□ -0.21
SMC1A-203ENST00000428014 STAG3Q9UJ98 1225 aa13.7□□□□□ -0.22
SMC1A-203ENST00000428014 SPHKAPQ2M3C7 1700 aa13.7□□□□□ -0.22
SMC1A-203ENST00000428014 TXNDC2Q86VQ3 553 aa13.69□□□□□ -0.22
SMC1A-203ENST00000428014 FOXD4L1Q9NU39 408 aa13.69□□□□□ -0.22
SMC1A-203ENST00000428014 SETD5Q9C0A6 1442 aa13.68□□□□□ -0.22
SMC1A-203ENST00000428014 LTKP29376 864 aa13.68□□□□□ -0.22
SMC1A-203ENST00000428014 PLEKHG1Q9ULL1 1385 aa13.68□□□□□ -0.22
SMC1A-203ENST00000428014 PIK3R4Q99570 1358 aa13.67□□□□□ -0.22
SMC1A-203ENST00000428014 DIP2AQ14689 1571 aa13.66□□□□□ -0.22
SMC1A-203ENST00000428014 ZNF335Q9H4Z2 1342 aaPredicted RBP13.65□□□□□ -0.22
SMC1A-203ENST00000428014 ILDR1Q86SU0 546 aaPredicted RBP13.65□□□□□ -0.22
SMC1A-203ENST00000428014 RPGRIP1LQ68CZ1 1315 aa13.64□□□□□ -0.23
SMC1A-203ENST00000428014 RIMS2Q9UQ26 1411 aa13.64□□□□□ -0.23
SMC1A-203ENST00000428014 TBX22Q9Y458 520 aa13.64□□□□□ -0.23
SMC1A-203ENST00000428014 NCOA3Q9Y6Q9 1424 aa13.64□□□□□ -0.23
SMC1A-203ENST00000428014 NKTRP30414 1462 aaKnown RBP13.63□□□□□ -0.23
SMC1A-203ENST00000428014 NWD1Q149M9 1564 aa13.62□□□□□ -0.23
SMC1A-203ENST00000428014 KCNA6P17658 529 aa13.61□□□□□ -0.23
SMC1A-203ENST00000428014 TRIM52Q96A61 297 aa13.6□□□□□ -0.23
SMC1A-203ENST00000428014 SETBP1Q9Y6X0 1596 aa13.6□□□□□ -0.23
SMC1A-203ENST00000428014 KIF1BO60333 1816 aa13.6□□□□□ -0.23
SMC1A-203ENST00000428014 MYO5BQ9ULV0 1848 aa13.6□□□□□ -0.23
SMC1A-203ENST00000428014 MPHOSPH9Q99550 1183 aa13.59□□□□□ -0.23
SMC1A-203ENST00000428014 CLTCL1P53675 1640 aa13.59□□□□□ -0.23
SMC1A-203ENST00000428014 LRRC7Q96NW7 1537 aa13.59□□□□□ -0.23
SMC1A-203ENST00000428014 RAB3GAP2Q9H2M9 1393 aa13.58□□□□□ -0.23
SMC1A-203ENST00000428014 PRAG1Q86YV5 1406 aa13.58□□□□□ -0.24
SMC1A-203ENST00000428014 ADAMTS13Q76LX8 1427 aa13.57□□□□□ -0.24
SMC1A-203ENST00000428014 STAC3Q96MF2 364 aa13.57□□□□□ -0.24
SMC1A-203ENST00000428014 CCDC144AA2RUR9 1427 aa13.56□□□□□ -0.24
SMC1A-203ENST00000428014 NEXMIFQ5QGS0 1516 aa13.56□□□□□ -0.24
SMC1A-203ENST00000428014 VGFO15240 615 aaPredicted RBP13.56□□□□□ -0.24
SMC1A-203ENST00000428014 TOM1O60784 492 aa13.56□□□□□ -0.24
SMC1A-203ENST00000428014 CHD2O14647 1828 aaKnown RBP13.55□□□□□ -0.24
SMC1A-203ENST00000428014 PPP1R15AO75807 674 aaPredicted RBP13.55□□□□□ -0.24
SMC1A-203ENST00000428014 ANKRD30BQ9BXX2 1392 aa13.55□□□□□ -0.24
SMC1A-203ENST00000428014 STRCP1A6NGW2 1772 aa13.55□□□□□ -0.24
SMC1A-203ENST00000428014 SPATA31E1Q6ZUB1 1445 aa13.55□□□□□ -0.24
SMC1A-203ENST00000428014 NRXN3Q9Y4C0 1643 aa13.51□□□□□ -0.25
SMC1A-203ENST00000428014 CHGAP10645 457 aaKnown RBP13.51□□□□□ -0.25
SMC1A-203ENST00000428014 DCCP43146 1447 aa13.5□□□□□ -0.25
SMC1A-203ENST00000428014 SLC26A8Q96RN1 970 aa13.5□□□□□ -0.25
SMC1A-203ENST00000428014 PPLO60437 1756 aa13.5□□□□□ -0.25
SMC1A-203ENST00000428014 XRN1Q8IZH2 1706 aaKnown RBP13.48□□□□□ -0.25
SMC1A-203ENST00000428014 UBAP1LF5GYI3 381 aa13.48□□□□□ -0.25
SMC1A-203ENST00000428014 ZNF326Q5BKZ1 582 aaKnown RBP13.48□□□□□ -0.25
SMC1A-203ENST00000428014 XIRP1Q702N8 1843 aaKnown RBP13.48□□□□□ -0.25
SMC1A-203ENST00000428014 MYOM2P54296 1465 aa13.48□□□□□ -0.25
SMC1A-203ENST00000428014 PTCH1Q13635 1447 aa13.47□□□□□ -0.25
SMC1A-203ENST00000428014 FAM135BQ49AJ0 1406 aa13.47□□□□□ -0.25
SMC1A-203ENST00000428014 TMEM94Q12767 1356 aa13.47□□□□□ -0.25
SMC1A-203ENST00000428014 ALKQ9UM73 1620 aa13.47□□□□□ -0.25
SMC1A-203ENST00000428014 NRXN1Q9ULB1 1477 aa13.47□□□□□ -0.25
SMC1A-203ENST00000428014 IFT172Q9UG01 1749 aa13.46□□□□□ -0.25
SMC1A-203ENST00000428014 BCANQ96GW7 911 aa13.45□□□□□ -0.26
SMC1A-203ENST00000428014 TECPR2O15040 1411 aa13.45□□□□□ -0.26
SMC1A-203ENST00000428014 MSH6P52701 1360 aa13.45□□□□□ -0.26
SMC1A-203ENST00000428014 SETD1AO15047 1707 aaKnown RBP13.44□□□□□ -0.26
SMC1A-203ENST00000428014 MYCNP04198 464 aaPredicted RBP13.44□□□□□ -0.26
SMC1A-203ENST00000428014 PROSER2Q86WR7 435 aaPredicted RBP13.44□□□□□ -0.26
SMC1A-203ENST00000428014 C19orf44Q9H6X5 657 aa13.44□□□□□ -0.26
SMC1A-203ENST00000428014 PIK3C2GO75747 1445 aa13.44□□□□□ -0.26
SMC1A-203ENST00000428014 PTPRUQ92729 1446 aa13.43□□□□□ -0.26
SMC1A-203ENST00000428014 SIRT1Q96EB6 747 aa13.43□□□□□ -0.26
SMC1A-203ENST00000428014 LAMC1P11047 1609 aa13.42□□□□□ -0.26
SMC1A-203ENST00000428014 CADPS2Q86UW7 1296 aa13.42□□□□□ -0.26
SMC1A-203ENST00000428014 AMOTL2Q9Y2J4 779 aa13.42□□□□□ -0.26
SMC1A-203ENST00000428014 U3KPZ7 1027 aaPredicted RBP13.42□□□□□ -0.26
SMC1A-203ENST00000428014 METP08581 1390 aa13.42□□□□□ -0.26
SMC1A-203ENST00000428014 ABCC11Q96J66 1382 aa13.4□□□□□ -0.26
SMC1A-203ENST00000428014 ADGRL3Q9HAR2 1447 aa13.39□□□□□ -0.27
SMC1A-203ENST00000428014 C14orf93Q9H972 538 aaKnown RBP13.38□□□□□ -0.27
SMC1A-203ENST00000428014 LRPPRCP42704 1394 aaKnown RBP13.37□□□□□ -0.27
SMC1A-203ENST00000428014 KNDC1Q76NI1 1749 aa13.37□□□□□ -0.27
SMC1A-203ENST00000428014 TRIM26Q12899 539 aaPredicted RBP13.36□□□□□ -0.27
SMC1A-203ENST00000428014 NUTM2DQ5VT03 806 aaPredicted RBP13.36□□□□□ -0.27
SMC1A-203ENST00000428014 SLAIN2Q9P270 581 aa13.36□□□□□ -0.27
SMC1A-203ENST00000428014 ADGRF5Q8IZF2 1346 aa13.36□□□□□ -0.27
SMC1A-203ENST00000428014 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.36□□□□□ -0.27
SMC1A-203ENST00000428014 DLC1Q96QB1 1528 aa13.34□□□□□ -0.27
SMC1A-203ENST00000428014 ATF3P18847 181 aa13.34□□□□□ -0.27
SMC1A-203ENST00000428014 RGL3Q3MIN7 710 aa13.33□□□□□ -0.28
SMC1A-203ENST00000428014 DHX57Q6P158 1386 aaKnown RBP13.32□□□□□ -0.28
SMC1A-203ENST00000428014 AHDC1Q5TGY3 1603 aaPredicted RBP13.32□□□□□ -0.28
SMC1A-203ENST00000428014 CDC42BPGQ6DT37 1551 aa13.32□□□□□ -0.28
SMC1A-203ENST00000428014 ROBO2Q9HCK4 1378 aa13.32□□□□□ -0.28
SMC1A-203ENST00000428014 YTHDC2Q9H6S0 1430 aaKnown RBP13.31□□□□□ -0.28
SMC1A-203ENST00000428014 ROBO1Q9Y6N7 1651 aa13.31□□□□□ -0.28
SMC1A-203ENST00000428014 KIAA1210Q9ULL0 1709 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms