RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 MRPL50Q8N5N7 158 aaKnown RBP8.94□□□□□ -0.98
USP40-204ENST00000427947 KRTAP3-3Q9BYR6 98 aa8.94□□□□□ -0.98
USP40-204ENST00000427947 KRTAP3-2Q9BYR7 98 aa8.94□□□□□ -0.98
USP40-204ENST00000427947 DDRGK1Q96HY6 314 aa8.93□□□□□ -0.98
USP40-204ENST00000427947 LAPTM4BQ86VI4 370 aa8.92□□□□□ -0.98
USP40-204ENST00000427947 DDX11L8A8MPP1 907 aa8.91□□□□□ -0.98
USP40-204ENST00000427947 HRO43593 1189 aa8.91□□□□□ -0.98
USP40-204ENST00000427947 HDGFP51858 240 aaKnown RBP8.91□□□□□ -0.98
USP40-204ENST00000427947 SWT1Q5T5J6 900 aaKnown RBP8.91□□□□□ -0.98
USP40-204ENST00000427947 SULF1Q8IWU6 871 aa8.91□□□□□ -0.98
USP40-204ENST00000427947 CDAN1Q8IWY9 1227 aa8.91□□□□□ -0.98
USP40-204ENST00000427947 STAC3Q96MF2 364 aa8.91□□□□□ -0.98
USP40-204ENST00000427947 ZFRQ96KR1 1074 aaKnown RBP8.9□□□□□ -0.98
USP40-204ENST00000427947 PLEKHG3A1L390 1219 aa8.89□□□□□ -0.99
USP40-204ENST00000427947 SAMD7Q7Z3H4 446 aa8.89□□□□□ -0.99
USP40-204ENST00000427947 BEGAINQ9BUH8 593 aa8.89□□□□□ -0.99
USP40-204ENST00000427947 RNF40O75150 1001 aa8.88□□□□□ -0.99
USP40-204ENST00000427947 RDH13Q8NBN7 331 aa8.88□□□□□ -0.99
USP40-204ENST00000427947 GOLGA8CPA6NN73 597 aa8.87□□□□□ -0.99
USP40-204ENST00000427947 CD46P15529 392 aa8.87□□□□□ -0.99
USP40-204ENST00000427947 SLC4A3P48751 1232 aa8.87□□□□□ -0.99
USP40-204ENST00000427947 RSPH4AQ5TD94 716 aa8.85□□□□□ -0.99
USP40-204ENST00000427947 SLF2Q8IX21 1173 aa8.85□□□□□ -0.99
USP40-204ENST00000427947 LRCH3Q96II8 777 aa8.85□□□□□ -0.99
USP40-204ENST00000427947 ANKK1Q8NFD2 765 aa8.84□□□□□ -0.99
USP40-204ENST00000427947 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.84□□□□□ -0.99
USP40-204ENST00000427947 SLC10A3P09131 477 aa8.83□□□□□ -1
USP40-204ENST00000427947 WNT2BQ93097 391 aa8.82□□□□□ -1
USP40-204ENST00000427947 BCAMP50895 628 aa8.81□□□□□ -1
USP40-204ENST00000427947 TBC1D2Q9BYX2 928 aa8.81□□□□□ -1
USP40-204ENST00000427947 SOWAHBA6NEL2 793 aa8.8□□□□□ -1
USP40-204ENST00000427947 NUTM1Q86Y26 1132 aa8.8□□□□□ -1
USP40-204ENST00000427947 RSPH6AQ9H0K4 717 aa8.8□□□□□ -1
USP40-204ENST00000427947 CFHP08603 1231 aa8.79□□□□□ -1
USP40-204ENST00000427947 GCGRP47871 477 aa8.79□□□□□ -1
USP40-204ENST00000427947 DIXDC1Q155Q3 683 aa8.79□□□□□ -1
USP40-204ENST00000427947 SH3D19Q5HYK7 790 aa8.79□□□□□ -1
USP40-204ENST00000427947 SPIRE2Q8WWL2 714 aa8.79□□□□□ -1
USP40-204ENST00000427947 KDM4AO75164 1064 aa8.78□□□□□ -1
USP40-204ENST00000427947 MYSM1Q5VVJ2 828 aa8.78□□□□□ -1
USP40-204ENST00000427947 NECTIN2Q92692 538 aa8.78□□□□□ -1
USP40-204ENST00000427947 KCTD12Q96CX2 325 aaKnown RBP8.78□□□□□ -1
USP40-204ENST00000427947 GOPCQ9HD26 462 aa8.78□□□□□ -1
USP40-204ENST00000427947 POLR3EQ9NVU0 708 aa8.77□□□□□ -1.01
USP40-204ENST00000427947 ATP1B4Q9UN42 357 aaPredicted RBP8.77□□□□□ -1.01
USP40-204ENST00000427947 HPS5Q9UPZ3 1129 aa8.77□□□□□ -1.01
USP40-204ENST00000427947 PPP4CP60510 307 aa8.76□□□□□ -1.01
USP40-204ENST00000427947 SKIV2LQ15477 1246 aaKnown RBP8.76□□□□□ -1.01
USP40-204ENST00000427947 PCMTD1Q96MG8 357 aaPredicted RBP8.76□□□□□ -1.01
USP40-204ENST00000427947 KMT5BQ4FZB7 885 aa8.75□□□□□ -1.01
USP40-204ENST00000427947 THSD4Q6ZMP0 1018 aa8.75□□□□□ -1.01
USP40-204ENST00000427947 TSR3Q9UJK0 312 aaKnown RBP8.75□□□□□ -1.01
USP40-204ENST00000427947 GTF3C3Q9Y5Q9 886 aa8.75□□□□□ -1.01
USP40-204ENST00000427947 MOXD2PA6NHM9 499 aa8.74□□□□□ -1.01
USP40-204ENST00000427947 CLK2P49760 499 aaKnown RBP8.74□□□□□ -1.01
USP40-204ENST00000427947 USP46P62068 366 aa8.74□□□□□ -1.01
USP40-204ENST00000427947 FUT2Q10981 343 aa8.74□□□□□ -1.01
USP40-204ENST00000427947 HOXA2O43364 376 aa8.73□□□□□ -1.01
USP40-204ENST00000427947 NDUFV2P19404 249 aa8.73□□□□□ -1.01
USP40-204ENST00000427947 RIC3Q7Z5B4 369 aa8.73□□□□□ -1.01
USP40-204ENST00000427947 LIMD1Q9UGP4 676 aa8.73□□□□□ -1.01
USP40-204ENST00000427947 RSBN1LQ6PCB5 846 aaPredicted RBP8.72□□□□□ -1.01
USP40-204ENST00000427947 PROCA1Q8NCQ7 364 aaPredicted RBP8.72□□□□□ -1.01
USP40-204ENST00000427947 PRR14Q9BWN1 585 aa8.72□□□□□ -1.01
USP40-204ENST00000427947 WBP1LQ9NX94 342 aa8.72□□□□□ -1.01
USP40-204ENST00000427947 PCDH10Q9P2E7 1040 aa8.72□□□□□ -1.01
USP40-204ENST00000427947 MYT1LQ9UL68 1186 aa8.72□□□□□ -1.01
USP40-204ENST00000427947 APLP1P51693 650 aa8.71□□□□□ -1.02
USP40-204ENST00000427947 GRIPAP1Q4V328 841 aa8.71□□□□□ -1.02
USP40-204ENST00000427947 HLA-CQ95604 372 aa8.71□□□□□ -1.02
USP40-204ENST00000427947 SPTLC1O15269 473 aa8.7□□□□□ -1.02
USP40-204ENST00000427947 ACTN4O43707 911 aaKnown RBP8.7□□□□□ -1.02
USP40-204ENST00000427947 ATP6V1AP38606 617 aa8.7□□□□□ -1.02
USP40-204ENST00000427947 GUCA2AQ02747 115 aa8.7□□□□□ -1.02
USP40-204ENST00000427947 CSPP1Q1MSJ5 1256 aa8.7□□□□□ -1.02
USP40-204ENST00000427947 FDX1P10109 184 aa8.69□□□□□ -1.02
USP40-204ENST00000427947 PTPN5P54829 565 aa8.69□□□□□ -1.02
USP40-204ENST00000427947 PUS10Q3MIT2 529 aaKnown RBP8.69□□□□□ -1.02
USP40-204ENST00000427947 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.69□□□□□ -1.02
USP40-204ENST00000427947 GJA5P36382 358 aa8.68□□□□□ -1.02
USP40-204ENST00000427947 PCDHB3Q9Y5E6 796 aa8.67□□□□□ -1.02
USP40-204ENST00000427947 PCDHB15Q9Y5E8 787 aa8.67□□□□□ -1.02
USP40-204ENST00000427947 QPCTQ16769 361 aa8.66□□□□□ -1.02
USP40-204ENST00000427947 MORN1Q5T089 497 aa8.66□□□□□ -1.02
USP40-204ENST00000427947 SPNS2Q8IVW8 549 aa8.66□□□□□ -1.02
USP40-204ENST00000427947 PCDHGC3Q9UN70 934 aa8.66□□□□□ -1.02
USP40-204ENST00000427947 TUSC1Q2TAM9 212 aa8.65□□□□□ -1.02
USP40-204ENST00000427947 NUTM2BA6NNL0 878 aaPredicted RBP8.64□□□□□ -1.03
USP40-204ENST00000427947 NUTM2EB1AL46 878 aaPredicted RBP8.64□□□□□ -1.03
USP40-204ENST00000427947 NUTM2DQ5VT03 806 aaPredicted RBP8.64□□□□□ -1.03
USP40-204ENST00000427947 NYAP1Q6ZVC0 841 aa8.64□□□□□ -1.03
USP40-204ENST00000427947 NUTM2AQ8IVF1 878 aaPredicted RBP8.64□□□□□ -1.03
USP40-204ENST00000427947 CABLES1Q8TDN4 633 aa8.64□□□□□ -1.03
USP40-204ENST00000427947 RNF166Q96A37 237 aaPredicted RBP8.64□□□□□ -1.03
USP40-204ENST00000427947 ZBTB3Q9H5J0 574 aa8.64□□□□□ -1.03
USP40-204ENST00000427947 SLC27A5Q9Y2P5 690 aa8.64□□□□□ -1.03
USP40-204ENST00000427947 HRCP23327 699 aa8.63□□□□□ -1.03
USP40-204ENST00000427947 BLOC1S3Q6QNY0 202 aa8.63□□□□□ -1.03
USP40-204ENST00000427947 C6orf229H3BNL8 230 aa8.62□□□□□ -1.03
USP40-204ENST00000427947 LILRB3O75022 631 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms