RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 KIF16BQ96L93 1317 aa7.06□□□□□ -1.28
HERC4-206ENST00000427635 CEP164Q9UPV0 1460 aa7.06□□□□□ -1.28
HERC4-206ENST00000427635 TPM1P09493 284 aa7.06□□□□□ -1.28
HERC4-206ENST00000427635 H3BQV1 296 aa7.05□□□□□ -1.28
HERC4-206ENST00000427635 DDX58O95786 925 aaKnown RBP7.05□□□□□ -1.28
HERC4-206ENST00000427635 IFFO2Q5TF58 517 aa7.05□□□□□ -1.28
HERC4-206ENST00000427635 CPLX2Q6PUV4 134 aaKnown RBP7.05□□□□□ -1.28
HERC4-206ENST00000427635 PCMTD1Q96MG8 357 aaPredicted RBP7.05□□□□□ -1.28
HERC4-206ENST00000427635 UACAQ9BZF9 1416 aa7.05□□□□□ -1.28
HERC4-206ENST00000427635 NUTM2BA6NNL0 878 aaPredicted RBP7.05□□□□□ -1.28
HERC4-206ENST00000427635 NUTM2EB1AL46 878 aaPredicted RBP7.05□□□□□ -1.28
HERC4-206ENST00000427635 NUTM2AQ8IVF1 878 aaPredicted RBP7.05□□□□□ -1.28
HERC4-206ENST00000427635 RWDD1Q9H446 243 aaPredicted RBP7.05□□□□□ -1.28
HERC4-206ENST00000427635 SPDYE4A6NLX3 237 aa7.04□□□□□ -1.28
HERC4-206ENST00000427635 PPM1FP49593 454 aaPredicted RBP7.04□□□□□ -1.28
HERC4-206ENST00000427635 PIP4K2BP78356 416 aa7.04□□□□□ -1.28
HERC4-206ENST00000427635 CCDC70Q6NSX1 233 aa7.04□□□□□ -1.28
HERC4-206ENST00000427635 ANKRD30AQ9BXX3 1397 aa7.04□□□□□ -1.28
HERC4-206ENST00000427635 FAM184AQ8NB25 1140 aa7.04□□□□□ -1.28
HERC4-206ENST00000427635 CT47A1Q5JQC4 288 aaPredicted RBP7.04□□□□□ -1.28
HERC4-206ENST00000427635 DNAJC5Q9H3Z4 198 aa7.04□□□□□ -1.28
HERC4-206ENST00000427635 FAM69CQ0P6D2 419 aa7.03□□□□□ -1.28
HERC4-206ENST00000427635 TEX2Q8IWB9 1127 aa7.03□□□□□ -1.28
HERC4-206ENST00000427635 GBP4Q96PP9 640 aa7.03□□□□□ -1.28
HERC4-206ENST00000427635 CUX2O14529 1486 aa7.03□□□□□ -1.28
HERC4-206ENST00000427635 RAPGEF4Q8WZA2 1011 aa7.03□□□□□ -1.28
HERC4-206ENST00000427635 FAM193AP78312 1265 aa7.03□□□□□ -1.28
HERC4-206ENST00000427635 CCDC27Q2M243 656 aa7.03□□□□□ -1.28
HERC4-206ENST00000427635 TMEM87AQ8NBN3 555 aa7.03□□□□□ -1.28
HERC4-206ENST00000427635 CARMIL1Q5VZK9 1371 aa7.03□□□□□ -1.28
HERC4-206ENST00000427635 PMFBP1Q8TBY8 1022 aa7.02□□□□□ -1.29
HERC4-206ENST00000427635 RDXP35241 583 aaKnown RBP7.02□□□□□ -1.29
HERC4-206ENST00000427635 TRDNQ13061 729 aa7.02□□□□□ -1.29
HERC4-206ENST00000427635 PKD2Q13563 968 aa7.02□□□□□ -1.29
HERC4-206ENST00000427635 KIF6Q6ZMV9 814 aa7.02□□□□□ -1.29
HERC4-206ENST00000427635 ANKRD20A12PQ8NF67 263 aa7.02□□□□□ -1.29
HERC4-206ENST00000427635 NFXL1Q6ZNB6 911 aa7.02□□□□□ -1.29
HERC4-206ENST00000427635 C9orf78Q9NZ63 289 aaPredicted RBP7.02□□□□□ -1.29
HERC4-206ENST00000427635 MPHOSPH10O00566 681 aaKnown RBP7.01□□□□□ -1.29
HERC4-206ENST00000427635 HOOK1Q9UJC3 728 aaKnown RBP7.01□□□□□ -1.29
HERC4-206ENST00000427635 ARHGAP35Q9NRY4 1499 aa7.01□□□□□ -1.29
HERC4-206ENST00000427635 FYB1O15117 783 aa7.01□□□□□ -1.29
HERC4-206ENST00000427635 B4GALNT3Q6L9W6 998 aa7.01□□□□□ -1.29
HERC4-206ENST00000427635 C16orf71Q8IYS4 520 aaPredicted RBP7.01□□□□□ -1.29
HERC4-206ENST00000427635 SLC4A3P48751 1232 aa7.01□□□□□ -1.29
HERC4-206ENST00000427635 MFAP1P55081 439 aaKnown RBP7.01□□□□□ -1.29
HERC4-206ENST00000427635 NECTIN2Q92692 538 aa7.01□□□□□ -1.29
HERC4-206ENST00000427635 VGFO15240 615 aaPredicted RBP7□□□□□ -1.29
HERC4-206ENST00000427635 SLC3A2P08195 630 aaKnown RBP7□□□□□ -1.29
HERC4-206ENST00000427635 BRMS1Q9HCU9 246 aa7□□□□□ -1.29
HERC4-206ENST00000427635 NUP155O75694 1391 aa7□□□□□ -1.29
HERC4-206ENST00000427635 EIF2S2P20042 333 aaKnown RBP7□□□□□ -1.29
HERC4-206ENST00000427635 EPS15P42566 896 aa7□□□□□ -1.29
HERC4-206ENST00000427635 PHF14O94880 888 aa7□□□□□ -1.29
HERC4-206ENST00000427635 BRPF1P55201 1214 aaPredicted RBP7□□□□□ -1.29
HERC4-206ENST00000427635 SOGA1O94964 1423 aa7□□□□□ -1.29
HERC4-206ENST00000427635 TRIM21P19474 475 aaKnown RBP6.99□□□□□ -1.29
HERC4-206ENST00000427635 ZFYVE27Q5T4F4 411 aa6.99□□□□□ -1.29
HERC4-206ENST00000427635 TMED8Q6PL24 325 aaPredicted RBP6.99□□□□□ -1.29
HERC4-206ENST00000427635 RBM5P52756 815 aaKnown RBP eCLIP6.99□□□□□ -1.29
HERC4-206ENST00000427635 RUFY2Q8WXA3 655 aa6.99□□□□□ -1.29
HERC4-206ENST00000427635 DNAI2Q9GZS0 605 aa6.99□□□□□ -1.29
HERC4-206ENST00000427635 EVC2Q86UK5 1308 aa6.99□□□□□ -1.29
HERC4-206ENST00000427635 GPRASP1Q5JY77 1395 aa6.99□□□□□ -1.29
HERC4-206ENST00000427635 MAP3K9P80192 1104 aa6.99□□□□□ -1.29
HERC4-206ENST00000427635 TCERG1O14776 1098 aaKnown RBP6.98□□□□□ -1.29
HERC4-206ENST00000427635 IPO7O95373 1038 aaKnown RBP6.98□□□□□ -1.29
HERC4-206ENST00000427635 HNRNPMP52272 730 aaKnown RBP eCLIP6.98□□□□□ -1.298e-8■■■■■ 31.1
HERC4-206ENST00000427635 SUPT16HQ9Y5B9 1047 aaKnown RBP6.98□□□□□ -1.29
HERC4-206ENST00000427635 PDE3BQ13370 1112 aa6.98□□□□□ -1.29
HERC4-206ENST00000427635 IPO4Q8TEX9 1081 aaKnown RBP6.98□□□□□ -1.29
HERC4-206ENST00000427635 HSP90AB4PQ58FF6 505 aa6.98□□□□□ -1.29
HERC4-206ENST00000427635 RILPL2Q969X0 211 aa6.98□□□□□ -1.29
HERC4-206ENST00000427635 IFIT2P09913 472 aaKnown RBP6.98□□□□□ -1.29
HERC4-206ENST00000427635 NLRP2Q9NX02 1062 aa6.98□□□□□ -1.29
HERC4-206ENST00000427635 CPLX1O14810 134 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 ST18O60284 1047 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 HSP90AB2PQ58FF8 381 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 PROSER2Q86WR7 435 aaPredicted RBP6.97□□□□□ -1.29
HERC4-206ENST00000427635 DIAPH3Q9NSV4 1193 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 TRAK1Q9UPV9 953 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 G3BP1Q13283 466 aaKnown RBP eCLIP6.97□□□□□ -1.29
HERC4-206ENST00000427635 MCTP1Q6DN14 999 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 CCDC97Q96F63 343 aaPredicted RBP6.97□□□□□ -1.29
HERC4-206ENST00000427635 STRN4Q9NRL3 753 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 RALBP1Q15311 655 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 IL27Q8NEV9 243 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 XBP1P17861 261 aa6.97□□□□□ -1.29
HERC4-206ENST00000427635 TTLL12Q14166 644 aaPredicted RBP6.97□□□□□ -1.29
HERC4-206ENST00000427635 SAFBQ15424 915 aaKnown RBP eCLIP6.97□□□□□ -1.29
HERC4-206ENST00000427635 RBM42Q9BTD8 480 aaKnown RBP6.97□□□□□ -1.29
HERC4-206ENST00000427635 SMG6Q86US8 1419 aaKnown RBP6.96□□□□□ -1.29
HERC4-206ENST00000427635 RIC3Q7Z5B4 369 aa6.96□□□□□ -1.29
HERC4-206ENST00000427635 DNAJC2Q99543 621 aaKnown RBP6.96□□□□□ -1.29
HERC4-206ENST00000427635 GNL3LQ9NVN8 582 aaKnown RBP6.96□□□□□ -1.29
HERC4-206ENST00000427635 RRP12Q5JTH9 1297 aaKnown RBP6.96□□□□□ -1.29
HERC4-206ENST00000427635 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.96□□□□□ -1.3
HERC4-206ENST00000427635 NEBLO76041 1014 aa6.96□□□□□ -1.3
HERC4-206ENST00000427635 GOLGA6L19H0YKK7 550 aa6.95□□□□□ -1.3
HERC4-206ENST00000427635 DESP17661 470 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms