RNA–Protein interactions for RNA: ENST00000426962.1

LINC01238-202, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2

Gene LINC01238, Length 430 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-202ENST00000426962 KCNA6P17658 529 aa16.15■□□□□ 0.18
LINC01238-202ENST00000426962 TMEM131LA2VDJ0 1609 aa16.15■□□□□ 0.18
LINC01238-202ENST00000426962 LRRC7Q96NW7 1537 aa16.14■□□□□ 0.17
LINC01238-202ENST00000426962 PLEKHG1Q9ULL1 1385 aa16.13■□□□□ 0.17
LINC01238-202ENST00000426962 PIP4K2BP78356 416 aa16.13■□□□□ 0.17
LINC01238-202ENST00000426962 SLC4A1APQ9BWU0 796 aaKnown RBP16.13■□□□□ 0.17
LINC01238-202ENST00000426962 NUTM2DQ5VT03 806 aaPredicted RBP16.12■□□□□ 0.17
LINC01238-202ENST00000426962 SENP3Q9H4L4 574 aaPredicted RBP16.12■□□□□ 0.17
LINC01238-202ENST00000426962 TBX22Q9Y458 520 aa16.12■□□□□ 0.17
LINC01238-202ENST00000426962 STRCP1A6NGW2 1772 aa16.11■□□□□ 0.17
LINC01238-202ENST00000426962 SCAF1Q9H7N4 1312 aaKnown RBP16.11■□□□□ 0.17
LINC01238-202ENST00000426962 ZNF326Q5BKZ1 582 aaKnown RBP16.1■□□□□ 0.17
LINC01238-202ENST00000426962 PROSER2Q86WR7 435 aaPredicted RBP16.09■□□□□ 0.17
LINC01238-202ENST00000426962 MYO5BQ9ULV0 1848 aa16.09■□□□□ 0.17
LINC01238-202ENST00000426962 ACIN1Q9UKV3 1341 aaKnown RBP16.08■□□□□ 0.16
LINC01238-202ENST00000426962 SPHKAPQ2M3C7 1700 aa16.06■□□□□ 0.16
LINC01238-202ENST00000426962 TMEM94Q12767 1356 aa16.05■□□□□ 0.16
LINC01238-202ENST00000426962 MPHOSPH9Q99550 1183 aa16.05■□□□□ 0.16
LINC01238-202ENST00000426962 HSPA1LP34931 641 aa16.04■□□□□ 0.16
LINC01238-202ENST00000426962 RBM33Q96EV2 1170 aaKnown RBP16.04■□□□□ 0.16
LINC01238-202ENST00000426962 TRPM2O94759 1503 aa16.04■□□□□ 0.16
LINC01238-202ENST00000426962 ADAMTS13Q76LX8 1427 aa16.03■□□□□ 0.16
LINC01238-202ENST00000426962 FOXD1Q16676 465 aa16.03■□□□□ 0.16
LINC01238-202ENST00000426962 SETD5Q9C0A6 1442 aa16.02■□□□□ 0.16
LINC01238-202ENST00000426962 PIK3R4Q99570 1358 aa16.02■□□□□ 0.16
LINC01238-202ENST00000426962 ALKQ9UM73 1620 aa16.01■□□□□ 0.15
LINC01238-202ENST00000426962 NKTRP30414 1462 aaKnown RBP16.01■□□□□ 0.15
LINC01238-202ENST00000426962 CLTCL1P53675 1640 aa16.01■□□□□ 0.15
LINC01238-202ENST00000426962 RPGRIP1LQ68CZ1 1315 aa16■□□□□ 0.15
LINC01238-202ENST00000426962 VGFO15240 615 aaPredicted RBP16■□□□□ 0.15
LINC01238-202ENST00000426962 AMOTL2Q9Y2J4 779 aa16■□□□□ 0.15
LINC01238-202ENST00000426962 NWD1Q149M9 1564 aa16■□□□□ 0.15
LINC01238-202ENST00000426962 DIP2AQ14689 1571 aa15.98■□□□□ 0.15
LINC01238-202ENST00000426962 CHD2O14647 1828 aaKnown RBP15.98■□□□□ 0.15
LINC01238-202ENST00000426962 XIRP1Q702N8 1843 aaKnown RBP15.98■□□□□ 0.15
LINC01238-202ENST00000426962 NCOA3Q9Y6Q9 1424 aa15.97■□□□□ 0.15
LINC01238-202ENST00000426962 MSH6P52701 1360 aa15.97■□□□□ 0.15
LINC01238-202ENST00000426962 DISP3Q9P2K9 1392 aa15.97■□□□□ 0.15
LINC01238-202ENST00000426962 KIF1BO60333 1816 aa15.96■□□□□ 0.14
LINC01238-202ENST00000426962 FAM135BQ49AJ0 1406 aa15.95■□□□□ 0.14
LINC01238-202ENST00000426962 NEXMIFQ5QGS0 1516 aa15.95■□□□□ 0.14
LINC01238-202ENST00000426962 C14orf37Q86TY3 774 aa15.95■□□□□ 0.14
LINC01238-202ENST00000426962 SLAIN2Q9P270 581 aa15.95■□□□□ 0.14
LINC01238-202ENST00000426962 RAB3GAP2Q9H2M9 1393 aa15.95■□□□□ 0.14
LINC01238-202ENST00000426962 CCDC144AA2RUR9 1427 aa15.94■□□□□ 0.14
LINC01238-202ENST00000426962 PTPRUQ92729 1446 aa15.94■□□□□ 0.14
LINC01238-202ENST00000426962 HRCP23327 699 aa15.94■□□□□ 0.14
LINC01238-202ENST00000426962 C19orf44Q9H6X5 657 aa15.94■□□□□ 0.14
LINC01238-202ENST00000426962 SETBP1Q9Y6X0 1596 aa15.94■□□□□ 0.14
LINC01238-202ENST00000426962 METP08581 1390 aa15.93■□□□□ 0.14
LINC01238-202ENST00000426962 RGL3Q3MIN7 710 aa15.93■□□□□ 0.14
LINC01238-202ENST00000426962 ATF3P18847 181 aa15.91■□□□□ 0.14
LINC01238-202ENST00000426962 CADPS2Q86UW7 1296 aa15.91■□□□□ 0.14
LINC01238-202ENST00000426962 NRXN3Q9Y4C0 1643 aa15.9■□□□□ 0.14
LINC01238-202ENST00000426962 SPATA31E1Q6ZUB1 1445 aa15.88■□□□□ 0.13
LINC01238-202ENST00000426962 ANKRD30BQ9BXX2 1392 aa15.87■□□□□ 0.13
LINC01238-202ENST00000426962 ADGRF5Q8IZF2 1346 aa15.86■□□□□ 0.13
LINC01238-202ENST00000426962 ILDR2Q71H61 639 aa15.85■□□□□ 0.13
LINC01238-202ENST00000426962 XRN1Q8IZH2 1706 aaKnown RBP15.83■□□□□ 0.13
LINC01238-202ENST00000426962 ROBO1Q9Y6N7 1651 aa15.83■□□□□ 0.12
LINC01238-202ENST00000426962 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.82■□□□□ 0.12
LINC01238-202ENST00000426962 PPLO60437 1756 aa15.82■□□□□ 0.12
LINC01238-202ENST00000426962 DCCP43146 1447 aa15.82■□□□□ 0.12
LINC01238-202ENST00000426962 PTCH1Q13635 1447 aa15.79■□□□□ 0.12
LINC01238-202ENST00000426962 ROBO2Q9HCK4 1378 aa15.79■□□□□ 0.12
LINC01238-202ENST00000426962 BRINP3Q76B58 766 aa15.79■□□□□ 0.12
LINC01238-202ENST00000426962 PHF23Q9BUL5 403 aaPredicted RBP15.79■□□□□ 0.12
LINC01238-202ENST00000426962 MED1Q15648 1581 aaPredicted RBP15.79■□□□□ 0.12
LINC01238-202ENST00000426962 ADGRL3Q9HAR2 1447 aa15.78■□□□□ 0.12
LINC01238-202ENST00000426962 C14orf93Q9H972 538 aaKnown RBP15.78■□□□□ 0.12
LINC01238-202ENST00000426962 PRAG1Q86YV5 1406 aa15.77■□□□□ 0.12
LINC01238-202ENST00000426962 TMEM132EQ6IEE7 984 aa15.77■□□□□ 0.12
LINC01238-202ENST00000426962 STK26Q9P289 416 aa15.77■□□□□ 0.12
LINC01238-202ENST00000426962 SETD1AO15047 1707 aaKnown RBP15.77■□□□□ 0.11
LINC01238-202ENST00000426962 PIK3C2GO75747 1445 aa15.77■□□□□ 0.11
LINC01238-202ENST00000426962 MST1RQ04912 1400 aa15.76■□□□□ 0.11
LINC01238-202ENST00000426962 STAC3Q96MF2 364 aa15.75■□□□□ 0.11
LINC01238-202ENST00000426962 LRPPRCP42704 1394 aaKnown RBP15.75■□□□□ 0.11
LINC01238-202ENST00000426962 ABCC11Q96J66 1382 aa15.75■□□□□ 0.11
LINC01238-202ENST00000426962 JCADQ9P266 1359 aa15.75■□□□□ 0.11
LINC01238-202ENST00000426962 CFAP70Q5T0N1 1121 aa15.74■□□□□ 0.11
LINC01238-202ENST00000426962 WAPLQ7Z5K2 1190 aa15.74■□□□□ 0.11
LINC01238-202ENST00000426962 IFT172Q9UG01 1749 aa15.74■□□□□ 0.11
LINC01238-202ENST00000426962 DCAF11Q8TEB1 546 aa15.73■□□□□ 0.11
LINC01238-202ENST00000426962 SIRT1Q96EB6 747 aa15.73■□□□□ 0.11
LINC01238-202ENST00000426962 KDM2AQ9Y2K7 1162 aa15.73■□□□□ 0.11
LINC01238-202ENST00000426962 PHLPP1O60346 1717 aa15.73■□□□□ 0.11
LINC01238-202ENST00000426962 NRXN1Q9ULB1 1477 aa15.72■□□□□ 0.11
LINC01238-202ENST00000426962 SOCS7O14512 581 aa15.72■□□□□ 0.11
LINC01238-202ENST00000426962 DHX57Q6P158 1386 aaKnown RBP15.72■□□□□ 0.11
LINC01238-202ENST00000426962 MYOM2P54296 1465 aa15.71■□□□□ 0.11
LINC01238-202ENST00000426962 TECPR2O15040 1411 aa15.71■□□□□ 0.11
LINC01238-202ENST00000426962 YTHDC2Q9H6S0 1430 aaKnown RBP15.7■□□□□ 0.1
LINC01238-202ENST00000426962 AHDC1Q5TGY3 1603 aaPredicted RBP15.7■□□□□ 0.1
LINC01238-202ENST00000426962 LRRC59Q96AG4 307 aaKnown RBP15.7■□□□□ 0.1
LINC01238-202ENST00000426962 RGS17Q9UGC6 210 aaPredicted RBP15.7■□□□□ 0.1
LINC01238-202ENST00000426962 C1orf167Q5SNV9 1468 aa15.7■□□□□ 0.1
LINC01238-202ENST00000426962 SPATA31A6Q5VVP1 1343 aa15.69■□□□□ 0.1
LINC01238-202ENST00000426962 ASXL1Q8IXJ9 1541 aa15.69■□□□□ 0.1
LINC01238-202ENST00000426962 NALCNQ8IZF0 1738 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms