RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 LMTK2Q8IWU2 1503 aa14.51□□□□□ -0.09
CUX1-205ENST00000425244 ST20-MTHFSA0A0A6YYL1 179 aa14.51□□□□□ -0.09
CUX1-205ENST00000425244 RALGAPBQ86X10 1494 aa14.49□□□□□ -0.09
CUX1-205ENST00000425244 NBPF1Q3BBV0 1214 aa14.49□□□□□ -0.09
CUX1-205ENST00000425244 POLR1AO95602 1720 aaPredicted RBP14.49□□□□□ -0.09
CUX1-205ENST00000425244 UHRF1BP1Q6BDS2 1440 aa14.49□□□□□ -0.09
CUX1-205ENST00000425244 RBM19Q9Y4C8 960 aaKnown RBP14.49□□□□□ -0.09
CUX1-205ENST00000425244 ROCK2O75116 1388 aaKnown RBP14.48□□□□□ -0.09
CUX1-205ENST00000425244 CLTCQ00610 1675 aaKnown RBP14.48□□□□□ -0.09
CUX1-205ENST00000425244 IDI1Q13907 227 aa14.47□□□□□ -0.09
CUX1-205ENST00000425244 STAG3Q9UJ98 1225 aa14.46□□□□□ -0.09
CUX1-205ENST00000425244 AGLP35573 1532 aa14.46□□□□□ -0.09
CUX1-205ENST00000425244 REREQ9P2R6 1566 aa14.45□□□□□ -0.1
CUX1-205ENST00000425244 PRAG1Q86YV5 1406 aa14.45□□□□□ -0.1
CUX1-205ENST00000425244 KIF1BO60333 1816 aa14.45□□□□□ -0.1
CUX1-205ENST00000425244 CEBPAP49715 358 aaPredicted RBP14.45□□□□□ -0.1
CUX1-205ENST00000425244 TMC1Q8TDI8 760 aa14.45□□□□□ -0.1
CUX1-205ENST00000425244 ZC3H13Q5T200 1668 aaKnown RBP14.44□□□□□ -0.1
CUX1-205ENST00000425244 ADGRF5Q8IZF2 1346 aa14.43□□□□□ -0.1
CUX1-205ENST00000425244 PPP4R2Q9NY27 417 aa14.43□□□□□ -0.1
CUX1-205ENST00000425244 NOS1P29475 1434 aa14.43□□□□□ -0.1
CUX1-205ENST00000425244 SYNMO15061 1565 aa14.42□□□□□ -0.1
CUX1-205ENST00000425244 MROH2AA6NES4 1674 aa14.42□□□□□ -0.1
CUX1-205ENST00000425244 ZMYM3Q14202 1370 aa14.42□□□□□ -0.1
CUX1-205ENST00000425244 PPP6R1Q9UPN7 881 aa14.42□□□□□ -0.1
CUX1-205ENST00000425244 ARHGAP31Q2M1Z3 1444 aa14.41□□□□□ -0.1
CUX1-205ENST00000425244 B4GALNT3Q6L9W6 998 aa14.41□□□□□ -0.1
CUX1-205ENST00000425244 PREX1Q8TCU6 1659 aa14.41□□□□□ -0.1
CUX1-205ENST00000425244 CFAP70Q5T0N1 1121 aa14.4□□□□□ -0.1
CUX1-205ENST00000425244 SLC52A1Q9NWF4 448 aa14.4□□□□□ -0.1
CUX1-205ENST00000425244 ERICH6BQ5W0A0 696 aa14.39□□□□□ -0.11
CUX1-205ENST00000425244 PNISRQ8TF01 805 aaKnown RBP14.39□□□□□ -0.11
CUX1-205ENST00000425244 ERVK-7P63135 1459 aa14.38□□□□□ -0.11
CUX1-205ENST00000425244 TRPM1Q7Z4N2 1603 aa14.38□□□□□ -0.11
CUX1-205ENST00000425244 ADGRB3O60242 1522 aa14.37□□□□□ -0.11
CUX1-205ENST00000425244 NUDCQ9Y266 331 aa14.36□□□□□ -0.11
CUX1-205ENST00000425244 MYO5BQ9ULV0 1848 aa14.35□□□□□ -0.11
CUX1-205ENST00000425244 MADDQ8WXG6 1647 aa14.35□□□□□ -0.11
CUX1-205ENST00000425244 MYBBP1AQ9BQG0 1328 aaKnown RBP14.35□□□□□ -0.11
CUX1-205ENST00000425244 TMEM132EQ6IEE7 984 aa14.35□□□□□ -0.11
CUX1-205ENST00000425244 SMG6Q86US8 1419 aaKnown RBP14.35□□□□□ -0.11
CUX1-205ENST00000425244 RALBP1Q15311 655 aa14.34□□□□□ -0.11
CUX1-205ENST00000425244 PIK3C2BO00750 1634 aa14.34□□□□□ -0.11
CUX1-205ENST00000425244 SALL2Q9Y467 1007 aaPredicted RBP14.34□□□□□ -0.11
CUX1-205ENST00000425244 VGFO15240 615 aaPredicted RBP14.33□□□□□ -0.12
CUX1-205ENST00000425244 STAC3Q96MF2 364 aa14.32□□□□□ -0.12
CUX1-205ENST00000425244 BRD4O60885 1362 aaPredicted RBP14.31□□□□□ -0.12
CUX1-205ENST00000425244 KTN1Q86UP2 1357 aaKnown RBP14.31□□□□□ -0.12
CUX1-205ENST00000425244 CC2D1BQ5T0F9 858 aaKnown RBP14.31□□□□□ -0.12
CUX1-205ENST00000425244 TRAK1Q9UPV9 953 aa14.31□□□□□ -0.12
CUX1-205ENST00000425244 TNRQ92752 1358 aa14.31□□□□□ -0.12
CUX1-205ENST00000425244 RPGRIP1LQ68CZ1 1315 aa14.3□□□□□ -0.12
CUX1-205ENST00000425244 IFT172Q9UG01 1749 aa14.3□□□□□ -0.12
CUX1-205ENST00000425244 PPLO60437 1756 aa14.3□□□□□ -0.12
CUX1-205ENST00000425244 TMEM131LA2VDJ0 1609 aa14.29□□□□□ -0.12
CUX1-205ENST00000425244 FER1L4A9Z1Z3 1794 aa14.29□□□□□ -0.12
CUX1-205ENST00000425244 SPATA31D1Q6ZQQ2 1576 aa14.29□□□□□ -0.12
CUX1-205ENST00000425244 DISP3Q9P2K9 1392 aa14.29□□□□□ -0.12
CUX1-205ENST00000425244 MYOM2P54296 1465 aa14.29□□□□□ -0.12
CUX1-205ENST00000425244 GPRASP1Q5JY77 1395 aa14.29□□□□□ -0.12
CUX1-205ENST00000425244 STK26Q9P289 416 aa14.29□□□□□ -0.12
CUX1-205ENST00000425244 NLRP13Q86W25 1043 aa14.28□□□□□ -0.12
CUX1-205ENST00000425244 TESK2Q96S53 571 aa14.28□□□□□ -0.12
CUX1-205ENST00000425244 NEURL4Q96JN8 1562 aa14.28□□□□□ -0.12
CUX1-205ENST00000425244 NEXMIFQ5QGS0 1516 aa14.27□□□□□ -0.12
CUX1-205ENST00000425244 PANK3Q9H999 370 aa14.27□□□□□ -0.12
CUX1-205ENST00000425244 LRPPRCP42704 1394 aaKnown RBP14.27□□□□□ -0.13
CUX1-205ENST00000425244 TMF1P82094 1093 aa14.27□□□□□ -0.13
CUX1-205ENST00000425244 SAFB2Q14151 953 aaKnown RBP eCLIP14.27□□□□□ -0.13
CUX1-205ENST00000425244 PIK3C2GO75747 1445 aa14.27□□□□□ -0.13
CUX1-205ENST00000425244 C14orf93Q9H972 538 aaKnown RBP14.26□□□□□ -0.13
CUX1-205ENST00000425244 A2ML1A8K2U0 1454 aa14.26□□□□□ -0.13
CUX1-205ENST00000425244 CCDC136Q96JN2 1154 aa14.26□□□□□ -0.13
CUX1-205ENST00000425244 C3P01024 1663 aa14.26□□□□□ -0.13
CUX1-205ENST00000425244 PER1O15534 1290 aaPredicted RBP14.25□□□□□ -0.13
CUX1-205ENST00000425244 PARD3Q8TEW0 1356 aa14.25□□□□□ -0.13
CUX1-205ENST00000425244 MSH5O43196 834 aa14.24□□□□□ -0.13
CUX1-205ENST00000425244 SCAF11Q99590 1463 aaKnown RBP14.24□□□□□ -0.13
CUX1-205ENST00000425244 RIMS2Q9UQ26 1411 aa14.23□□□□□ -0.13
CUX1-205ENST00000425244 RIMS1Q86UR5 1692 aaKnown RBP14.23□□□□□ -0.13
CUX1-205ENST00000425244 NRXN1Q9ULB1 1477 aa14.23□□□□□ -0.13
CUX1-205ENST00000425244 RNF123Q5XPI4 1314 aa14.22□□□□□ -0.13
CUX1-205ENST00000425244 DAXXQ9UER7 740 aaPredicted RBP14.22□□□□□ -0.13
CUX1-205ENST00000425244 FANCIQ9NVI1 1328 aa14.21□□□□□ -0.13
CUX1-205ENST00000425244 EIF3AQ14152 1382 aaKnown RBP14.21□□□□□ -0.13
CUX1-205ENST00000425244 LAMC1P11047 1609 aa14.2□□□□□ -0.14
CUX1-205ENST00000425244 IQGAP1P46940 1657 aa14.2□□□□□ -0.14
CUX1-205ENST00000425244 KIAA1210Q9ULL0 1709 aa14.19□□□□□ -0.14
CUX1-205ENST00000425244 TXNDC2Q86VQ3 553 aa14.19□□□□□ -0.14
CUX1-205ENST00000425244 LTKP29376 864 aa14.18□□□□□ -0.14
CUX1-205ENST00000425244 RCAN3Q9UKA8 241 aa14.18□□□□□ -0.14
CUX1-205ENST00000425244 CDCA7LQ96GN5 454 aa14.18□□□□□ -0.14
CUX1-205ENST00000425244 CENPJQ9HC77 1338 aaPredicted RBP14.18□□□□□ -0.14
CUX1-205ENST00000425244 HDGFP51858 240 aaKnown RBP14.17□□□□□ -0.14
CUX1-205ENST00000425244 TMEM2Q9UHN6 1383 aa14.17□□□□□ -0.14
CUX1-205ENST00000425244 RRP1P56182 461 aaKnown RBP14.17□□□□□ -0.14
CUX1-205ENST00000425244 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.17□□□□□ -0.14
CUX1-205ENST00000425244 SLC26A8Q96RN1 970 aa14.17□□□□□ -0.14
CUX1-205ENST00000425244 KNSTRNQ9Y448 316 aa14.17□□□□□ -0.14
CUX1-205ENST00000425244 UBR1Q8IWV7 1749 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms