RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 JCADQ9P266 1359 aa26.27■■□□□ 1.8
CHCHD3-202ENST00000423635 BCANQ96GW7 911 aa26.26■■□□□ 1.79
CHCHD3-202ENST00000423635 FGD6Q6ZV73 1430 aa26.25■■□□□ 1.79
CHCHD3-202ENST00000423635 PLEKHG1Q9ULL1 1385 aa26.23■■□□□ 1.79
CHCHD3-202ENST00000423635 HDGFP51858 240 aaKnown RBP26.23■■□□□ 1.79
CHCHD3-202ENST00000423635 ZFYVE9O95405 1425 aa26.23■■□□□ 1.79
CHCHD3-202ENST00000423635 NCOA3Q9Y6Q9 1424 aa26.22■■□□□ 1.79
CHCHD3-202ENST00000423635 PHLPP1O60346 1717 aa26.22■■□□□ 1.79
CHCHD3-202ENST00000423635 APLP2Q06481 763 aa26.21■■□□□ 1.79
CHCHD3-202ENST00000423635 RPRD2Q5VT52 1461 aaKnown RBP26.21■■□□□ 1.79
CHCHD3-202ENST00000423635 TBX22Q9Y458 520 aa26.2■■□□□ 1.79
CHCHD3-202ENST00000423635 CHD2O14647 1828 aaKnown RBP26.2■■□□□ 1.78
CHCHD3-202ENST00000423635 ADGRL2O95490 1459 aa26.17■■□□□ 1.78
CHCHD3-202ENST00000423635 RIMS2Q9UQ26 1411 aa26.17■■□□□ 1.78
CHCHD3-202ENST00000423635 SPATA31A6Q5VVP1 1343 aa26.16■■□□□ 1.78
CHCHD3-202ENST00000423635 COL16A1Q07092 1604 aaPredicted RBP26.15■■□□□ 1.78
CHCHD3-202ENST00000423635 PPP1R15AO75807 674 aaPredicted RBP26.14■■□□□ 1.78
CHCHD3-202ENST00000423635 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.13■■□□□ 1.77
CHCHD3-202ENST00000423635 SETD1AO15047 1707 aaKnown RBP26.12■■□□□ 1.77
CHCHD3-202ENST00000423635 ZNF772Q68DY9 489 aaPredicted RBP26.12■■□□□ 1.77
CHCHD3-202ENST00000423635 C19orf44Q9H6X5 657 aa26.12■■□□□ 1.77
CHCHD3-202ENST00000423635 ANKRD50Q9ULJ7 1429 aa26.11■■□□□ 1.77
CHCHD3-202ENST00000423635 TMEM131LA2VDJ0 1609 aa26.11■■□□□ 1.77
CHCHD3-202ENST00000423635 CADPS2Q86UW7 1296 aa26.11■■□□□ 1.77
CHCHD3-202ENST00000423635 LRP6O75581 1613 aa26.09■■□□□ 1.77
CHCHD3-202ENST00000423635 MYO5BQ9ULV0 1848 aa26.09■■□□□ 1.77
CHCHD3-202ENST00000423635 UPF1Q92900 1129 aaKnown RBP eCLIP26.09■■□□□ 1.77
CHCHD3-202ENST00000423635 PIK3R4Q99570 1358 aa26.08■■□□□ 1.77
CHCHD3-202ENST00000423635 ADAMTS13Q76LX8 1427 aa26.08■■□□□ 1.77
CHCHD3-202ENST00000423635 C14orf37Q86TY3 774 aa26.07■■□□□ 1.76
CHCHD3-202ENST00000423635 GCC2Q8IWJ2 1684 aa26.06■■□□□ 1.76
CHCHD3-202ENST00000423635 ATF3P18847 181 aa26.06■■□□□ 1.76
CHCHD3-202ENST00000423635 MEX3CQ5U5Q3 659 aaKnown RBP26.06■■□□□ 1.76
CHCHD3-202ENST00000423635 AHDC1Q5TGY3 1603 aaPredicted RBP26.06■■□□□ 1.76
CHCHD3-202ENST00000423635 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.03■■□□□ 1.76
CHCHD3-202ENST00000423635 CHGAP10645 457 aaKnown RBP26.02■■□□□ 1.76
CHCHD3-202ENST00000423635 FAM50AQ14320 339 aaKnown RBP26.01■■□□□ 1.75
CHCHD3-202ENST00000423635 DIP2AQ14689 1571 aa26.01■■□□□ 1.75
CHCHD3-202ENST00000423635 SHPRHQ149N8 1683 aa26.01■■□□□ 1.75
CHCHD3-202ENST00000423635 NUTM2DQ5VT03 806 aaPredicted RBP26.01■■□□□ 1.75
CHCHD3-202ENST00000423635 TRIM52Q96A61 297 aa26■■□□□ 1.75
CHCHD3-202ENST00000423635 RXRBP28702 533 aa25.99■■□□□ 1.75
CHCHD3-202ENST00000423635 BRINP3Q76B58 766 aa25.99■■□□□ 1.75
CHCHD3-202ENST00000423635 AMOTL2Q9Y2J4 779 aa25.99■■□□□ 1.75
CHCHD3-202ENST00000423635 PTPRUQ92729 1446 aa25.95■■□□□ 1.74
CHCHD3-202ENST00000423635 UNC13BO14795 1591 aa25.94■■□□□ 1.74
CHCHD3-202ENST00000423635 CDK12Q9NYV4 1490 aaPredicted RBP25.94■■□□□ 1.74
CHCHD3-202ENST00000423635 TRPM2O94759 1503 aa25.93■■□□□ 1.74
CHCHD3-202ENST00000423635 DCCP43146 1447 aa25.92■■□□□ 1.74
CHCHD3-202ENST00000423635 E9PCH4 1651 aa25.92■■□□□ 1.74
CHCHD3-202ENST00000423635 SETD5Q9C0A6 1442 aa25.91■■□□□ 1.74
CHCHD3-202ENST00000423635 NUTM2BA6NNL0 878 aaPredicted RBP25.9■■□□□ 1.74
CHCHD3-202ENST00000423635 NUTM2EB1AL46 878 aaPredicted RBP25.9■■□□□ 1.74
CHCHD3-202ENST00000423635 NUTM2AQ8IVF1 878 aaPredicted RBP25.9■■□□□ 1.74
CHCHD3-202ENST00000423635 LRRC59Q96AG4 307 aaKnown RBP25.88■■□□□ 1.73
CHCHD3-202ENST00000423635 AFF2P51816 1311 aa25.87■■□□□ 1.73
CHCHD3-202ENST00000423635 ROCK1Q13464 1354 aa25.87■■□□□ 1.73
CHCHD3-202ENST00000423635 ASXL1Q8IXJ9 1541 aa25.86■■□□□ 1.73
CHCHD3-202ENST00000423635 IQGAP3Q86VI3 1631 aa25.85■■□□□ 1.73
CHCHD3-202ENST00000423635 MST1RQ04912 1400 aa25.85■■□□□ 1.73
CHCHD3-202ENST00000423635 NUP155O75694 1391 aa25.83■■□□□ 1.73
CHCHD3-202ENST00000423635 XRN1Q8IZH2 1706 aaKnown RBP25.81■■□□□ 1.72
CHCHD3-202ENST00000423635 SETBP1Q9Y6X0 1596 aa25.8■■□□□ 1.72
CHCHD3-202ENST00000423635 NHSL1Q5SYE7 1610 aa25.8■■□□□ 1.72
CHCHD3-202ENST00000423635 NRXN3Q9Y4C0 1643 aa25.8■■□□□ 1.72
CHCHD3-202ENST00000423635 RBM6P78332 1123 aaKnown RBP25.8■■□□□ 1.72
CHCHD3-202ENST00000423635 QTRT2Q9H974 415 aaKnown RBP25.8■■□□□ 1.72
CHCHD3-202ENST00000423635 METP08581 1390 aa25.78■■□□□ 1.72
CHCHD3-202ENST00000423635 C8orf37Q96NL8 207 aa25.77■■□□□ 1.72
CHCHD3-202ENST00000423635 PNPLA6Q8IY17 1366 aa25.76■■□□□ 1.71
CHCHD3-202ENST00000423635 DDX17Q92841 729 aaKnown RBP25.75■■□□□ 1.71
CHCHD3-202ENST00000423635 RGS12O14924 1447 aa25.74■■□□□ 1.71
CHCHD3-202ENST00000423635 ADGRL3Q9HAR2 1447 aa25.73■■□□□ 1.71
CHCHD3-202ENST00000423635 ZNF326Q5BKZ1 582 aaKnown RBP25.73■■□□□ 1.71
CHCHD3-202ENST00000423635 NGLY1Q96IV0 654 aa25.69■■□□□ 1.7
CHCHD3-202ENST00000423635 C1orf167Q5SNV9 1468 aa25.67■■□□□ 1.7
CHCHD3-202ENST00000423635 SRCAPQ6ZRS2 3230 aa25.66■■□□□ 1.7
CHCHD3-202ENST00000423635 SPHKAPQ2M3C7 1700 aa25.65■■□□□ 1.7
CHCHD3-202ENST00000423635 SOS2Q07890 1332 aaPredicted RBP25.65■■□□□ 1.7
CHCHD3-202ENST00000423635 ADAMTS2O95450 1211 aa25.64■■□□□ 1.7
CHCHD3-202ENST00000423635 LAMC1P11047 1609 aa25.63■■□□□ 1.69
CHCHD3-202ENST00000423635 NALCNQ8IZF0 1738 aa25.63■■□□□ 1.69
CHCHD3-202ENST00000423635 NEXMIFQ5QGS0 1516 aa25.62■■□□□ 1.69
CHCHD3-202ENST00000423635 FNBP4Q8N3X1 1017 aaPredicted RBP25.62■■□□□ 1.69
CHCHD3-202ENST00000423635 USP21Q9UK80 565 aa25.62■■□□□ 1.69
CHCHD3-202ENST00000423635 ATAD2Q6PL18 1390 aa25.61■■□□□ 1.69
CHCHD3-202ENST00000423635 ITGAEP38570 1179 aa25.61■■□□□ 1.69
CHCHD3-202ENST00000423635 ORAI2Q96SN7 254 aa25.61■■□□□ 1.69
CHCHD3-202ENST00000423635 TRPC5Q9UL62 973 aaPredicted RBP25.61■■□□□ 1.69
CHCHD3-202ENST00000423635 PTCH1Q13635 1447 aa25.59■■□□□ 1.69
CHCHD3-202ENST00000423635 VGFO15240 615 aaPredicted RBP25.56■■□□□ 1.68
CHCHD3-202ENST00000423635 ROBO2Q9HCK4 1378 aa25.55■■□□□ 1.68
CHCHD3-202ENST00000423635 CLTCL1P53675 1640 aa25.55■■□□□ 1.68
CHCHD3-202ENST00000423635 PRAG1Q86YV5 1406 aa25.55■■□□□ 1.68
CHCHD3-202ENST00000423635 FOXD1Q16676 465 aa25.54■■□□□ 1.68
CHCHD3-202ENST00000423635 ATRNO75882 1429 aa25.53■■□□□ 1.68
CHCHD3-202ENST00000423635 CCDC125Q86Z20 511 aa25.5■■□□□ 1.67
CHCHD3-202ENST00000423635 RPGRIP1LQ68CZ1 1315 aa25.49■■□□□ 1.67
CHCHD3-202ENST00000423635 ZRANB1Q9UGI0 708 aa25.49■■□□□ 1.67
CHCHD3-202ENST00000423635 COL22A1Q8NFW1 1626 aaPredicted RBP25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms