RNA–Protein interactions for RNA: ENST00000419981.1

PTCD1-202, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 4

Gene PTCD1, Length 533 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-202ENST00000419981 ZFYVE9O95405 1425 aa26.54■■□□□ 1.84
PTCD1-202ENST00000419981 SLC26A8Q96RN1 970 aa26.53■■□□□ 1.84
PTCD1-202ENST00000419981 NKTRP30414 1462 aaKnown RBP26.53■■□□□ 1.84
PTCD1-202ENST00000419981 SPHKAPQ2M3C7 1700 aa26.52■■□□□ 1.84
PTCD1-202ENST00000419981 KCNA6P17658 529 aa26.51■■□□□ 1.83
PTCD1-202ENST00000419981 RIMS2Q9UQ26 1411 aa26.5■■□□□ 1.83
PTCD1-202ENST00000419981 SENP3Q9H4L4 574 aaPredicted RBP26.5■■□□□ 1.83
PTCD1-202ENST00000419981 TMEM94Q12767 1356 aa26.49■■□□□ 1.83
PTCD1-202ENST00000419981 ITGAEP38570 1179 aa26.49■■□□□ 1.83
PTCD1-202ENST00000419981 BCANQ96GW7 911 aa26.49■■□□□ 1.83
PTCD1-202ENST00000419981 ROBO1Q9Y6N7 1651 aa26.49■■□□□ 1.83
PTCD1-202ENST00000419981 PLEKHG1Q9ULL1 1385 aa26.48■■□□□ 1.83
PTCD1-202ENST00000419981 PPARGC1BQ86YN6 1023 aaKnown RBP26.47■■□□□ 1.83
PTCD1-202ENST00000419981 PPP1R15AO75807 674 aaPredicted RBP26.45■■□□□ 1.82
PTCD1-202ENST00000419981 HDGFP51858 240 aaKnown RBP26.45■■□□□ 1.82
PTCD1-202ENST00000419981 PROSER2Q86WR7 435 aaPredicted RBP26.45■■□□□ 1.82
PTCD1-202ENST00000419981 NUP155O75694 1391 aa26.45■■□□□ 1.82
PTCD1-202ENST00000419981 DIP2AQ14689 1571 aa26.44■■□□□ 1.82
PTCD1-202ENST00000419981 CHGAP10645 457 aaKnown RBP26.43■■□□□ 1.82
PTCD1-202ENST00000419981 FAM135BQ49AJ0 1406 aa26.41■■□□□ 1.82
PTCD1-202ENST00000419981 PHF23Q9BUL5 403 aaPredicted RBP26.4■■□□□ 1.82
PTCD1-202ENST00000419981 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.39■■□□□ 1.82
PTCD1-202ENST00000419981 RBM33Q96EV2 1170 aaKnown RBP26.39■■□□□ 1.82
PTCD1-202ENST00000419981 KIF1BO60333 1816 aa26.37■■□□□ 1.81
PTCD1-202ENST00000419981 PHLPP1O60346 1717 aa26.37■■□□□ 1.81
PTCD1-202ENST00000419981 MSH6P52701 1360 aa26.37■■□□□ 1.81
PTCD1-202ENST00000419981 RRBP1Q9P2E9 1410 aaKnown RBP26.35■■□□□ 1.81
PTCD1-202ENST00000419981 TRPM2O94759 1503 aa26.34■■□□□ 1.81
PTCD1-202ENST00000419981 ADAMTS13Q76LX8 1427 aa26.34■■□□□ 1.81
PTCD1-202ENST00000419981 TBX22Q9Y458 520 aa26.34■■□□□ 1.81
PTCD1-202ENST00000419981 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.34■■□□□ 1.81
PTCD1-202ENST00000419981 NUTM2DQ5VT03 806 aaPredicted RBP26.32■■□□□ 1.8
PTCD1-202ENST00000419981 NRXN3Q9Y4C0 1643 aa26.32■■□□□ 1.8
PTCD1-202ENST00000419981 CLTCL1P53675 1640 aa26.31■■□□□ 1.8
PTCD1-202ENST00000419981 PIK3R4Q99570 1358 aa26.29■■□□□ 1.8
PTCD1-202ENST00000419981 NCOA3Q9Y6Q9 1424 aa26.28■■□□□ 1.8
PTCD1-202ENST00000419981 SETBP1Q9Y6X0 1596 aa26.27■■□□□ 1.8
PTCD1-202ENST00000419981 XRN1Q8IZH2 1706 aaKnown RBP26.26■■□□□ 1.79
PTCD1-202ENST00000419981 NAIPQ13075 1403 aa26.25■■□□□ 1.79
PTCD1-202ENST00000419981 SLAIN2Q9P270 581 aa26.23■■□□□ 1.79
PTCD1-202ENST00000419981 COL16A1Q07092 1604 aaPredicted RBP26.21■■□□□ 1.79
PTCD1-202ENST00000419981 NEXMIFQ5QGS0 1516 aa26.21■■□□□ 1.79
PTCD1-202ENST00000419981 C14orf37Q86TY3 774 aa26.21■■□□□ 1.79
PTCD1-202ENST00000419981 ZNF326Q5BKZ1 582 aaKnown RBP26.19■■□□□ 1.78
PTCD1-202ENST00000419981 PTPRUQ92729 1446 aa26.19■■□□□ 1.78
PTCD1-202ENST00000419981 HFM1A2PYH4 1435 aa26.16■■□□□ 1.78
PTCD1-202ENST00000419981 AMOTL2Q9Y2J4 779 aa26.16■■□□□ 1.78
PTCD1-202ENST00000419981 AHDC1Q5TGY3 1603 aaPredicted RBP26.15■■□□□ 1.78
PTCD1-202ENST00000419981 CADPS2Q86UW7 1296 aa26.14■■□□□ 1.78
PTCD1-202ENST00000419981 C19orf44Q9H6X5 657 aa26.14■■□□□ 1.78
PTCD1-202ENST00000419981 RGS17Q9UGC6 210 aaPredicted RBP26.14■■□□□ 1.78
PTCD1-202ENST00000419981 SHPRHQ149N8 1683 aa26.14■■□□□ 1.78
PTCD1-202ENST00000419981 PPLO60437 1756 aa26.14■■□□□ 1.78
PTCD1-202ENST00000419981 SETD1AO15047 1707 aaKnown RBP26.14■■□□□ 1.77
PTCD1-202ENST00000419981 JCADQ9P266 1359 aa26.12■■□□□ 1.77
PTCD1-202ENST00000419981 NALCNQ8IZF0 1738 aa26.12■■□□□ 1.77
PTCD1-202ENST00000419981 ATF3P18847 181 aa26.12■■□□□ 1.77
PTCD1-202ENST00000419981 DCCP43146 1447 aa26.1■■□□□ 1.77
PTCD1-202ENST00000419981 TRIM52Q96A61 297 aa26.09■■□□□ 1.77
PTCD1-202ENST00000419981 METP08581 1390 aa26.07■■□□□ 1.76
PTCD1-202ENST00000419981 NHSL1Q5SYE7 1610 aa26.07■■□□□ 1.76
PTCD1-202ENST00000419981 ASXL1Q8IXJ9 1541 aa26.03■■□□□ 1.76
PTCD1-202ENST00000419981 SLC4A1APQ9BWU0 796 aaKnown RBP26.01■■□□□ 1.75
PTCD1-202ENST00000419981 ADGRL3Q9HAR2 1447 aa26.01■■□□□ 1.75
PTCD1-202ENST00000419981 MST1RQ04912 1400 aa26■■□□□ 1.75
PTCD1-202ENST00000419981 POTEAQ6S8J7 498 aa26■■□□□ 1.75
PTCD1-202ENST00000419981 IFT172Q9UG01 1749 aa26■■□□□ 1.75
PTCD1-202ENST00000419981 LRP6O75581 1613 aa25.99■■□□□ 1.75
PTCD1-202ENST00000419981 SPATA31A6Q5VVP1 1343 aa25.99■■□□□ 1.75
PTCD1-202ENST00000419981 BRINP3Q76B58 766 aa25.99■■□□□ 1.75
PTCD1-202ENST00000419981 VGFO15240 615 aaPredicted RBP25.97■■□□□ 1.75
PTCD1-202ENST00000419981 PTCH1Q13635 1447 aa25.95■■□□□ 1.74
PTCD1-202ENST00000419981 RPGRIP1LQ68CZ1 1315 aa25.94■■□□□ 1.74
PTCD1-202ENST00000419981 MEX3CQ5U5Q3 659 aaKnown RBP25.91■■□□□ 1.74
PTCD1-202ENST00000419981 PRAG1Q86YV5 1406 aa25.9■■□□□ 1.74
PTCD1-202ENST00000419981 LAMC1P11047 1609 aa25.9■■□□□ 1.74
PTCD1-202ENST00000419981 SETD5Q9C0A6 1442 aa25.89■■□□□ 1.74
PTCD1-202ENST00000419981 CCDC144AA2RUR9 1427 aa25.88■■□□□ 1.73
PTCD1-202ENST00000419981 FOXD1Q16676 465 aa25.88■■□□□ 1.73
PTCD1-202ENST00000419981 ROBO2Q9HCK4 1378 aa25.86■■□□□ 1.73
PTCD1-202ENST00000419981 KNDC1Q76NI1 1749 aa25.85■■□□□ 1.73
PTCD1-202ENST00000419981 C1orf167Q5SNV9 1468 aa25.85■■□□□ 1.73
PTCD1-202ENST00000419981 ZNF772Q68DY9 489 aaPredicted RBP25.82■■□□□ 1.72
PTCD1-202ENST00000419981 SPATA31E1Q6ZUB1 1445 aa25.81■■□□□ 1.72
PTCD1-202ENST00000419981 NUTM2BA6NNL0 878 aaPredicted RBP25.81■■□□□ 1.72
PTCD1-202ENST00000419981 NUTM2EB1AL46 878 aaPredicted RBP25.81■■□□□ 1.72
PTCD1-202ENST00000419981 NUTM2AQ8IVF1 878 aaPredicted RBP25.81■■□□□ 1.72
PTCD1-202ENST00000419981 LRRC59Q96AG4 307 aaKnown RBP25.81■■□□□ 1.72
PTCD1-202ENST00000419981 CDC42BPGQ6DT37 1551 aa25.81■■□□□ 1.72
PTCD1-202ENST00000419981 MPHOSPH9Q99550 1183 aa25.8■■□□□ 1.72
PTCD1-202ENST00000419981 DDX17Q92841 729 aaKnown RBP25.79■■□□□ 1.72
PTCD1-202ENST00000419981 ADGRF5Q8IZF2 1346 aa25.77■■□□□ 1.72
PTCD1-202ENST00000419981 PNPLA6Q8IY17 1366 aa25.77■■□□□ 1.72
PTCD1-202ENST00000419981 ANKRD30BQ9BXX2 1392 aa25.77■■□□□ 1.72
PTCD1-202ENST00000419981 RGL3Q3MIN7 710 aa25.76■■□□□ 1.71
PTCD1-202ENST00000419981 ACIN1Q9UKV3 1341 aaKnown RBP25.74■■□□□ 1.71
PTCD1-202ENST00000419981 MARF1Q9Y4F3 1742 aaKnown RBP25.74■■□□□ 1.71
PTCD1-202ENST00000419981 COL22A1Q8NFW1 1626 aaPredicted RBP25.73■■□□□ 1.71
PTCD1-202ENST00000419981 TECPR2O15040 1411 aa25.72■■□□□ 1.71
PTCD1-202ENST00000419981 PIK3C2GO75747 1445 aa25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms