RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 UPF1Q92900 1129 aaKnown RBP eCLIP28.15■■■□□ 2.1
VCP-202ENST00000417448 MYO5BQ9ULV0 1848 aa28.15■■■□□ 2.1
VCP-202ENST00000417448 KANK1Q14678 1352 aa28.14■■■□□ 2.1
VCP-202ENST00000417448 PTPN23Q9H3S7 1636 aa28.12■■■□□ 2.09
VCP-202ENST00000417448 SHPRHQ149N8 1683 aa28.1■■■□□ 2.09
VCP-202ENST00000417448 DAPK1P53355 1430 aa28.09■■■□□ 2.09
VCP-202ENST00000417448 ZFYVE9O95405 1425 aa28.09■■■□□ 2.09
VCP-202ENST00000417448 TRIM52Q96A61 297 aa28.08■■■□□ 2.09
VCP-202ENST00000417448 FGD6Q6ZV73 1430 aa28.08■■■□□ 2.09
VCP-202ENST00000417448 BCANQ96GW7 911 aa28.07■■■□□ 2.08
VCP-202ENST00000417448 SPATA31A6Q5VVP1 1343 aa28.07■■■□□ 2.08
VCP-202ENST00000417448 AHDC1Q5TGY3 1603 aaPredicted RBP28.07■■■□□ 2.08
VCP-202ENST00000417448 GCC2Q8IWJ2 1684 aa28.06■■■□□ 2.08
VCP-202ENST00000417448 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.04■■■□□ 2.08
VCP-202ENST00000417448 PLEKHG1Q9ULL1 1385 aa28.04■■■□□ 2.08
VCP-202ENST00000417448 ZNF772Q68DY9 489 aaPredicted RBP28.04■■■□□ 2.08
VCP-202ENST00000417448 MEX3CQ5U5Q3 659 aaKnown RBP28.02■■■□□ 2.08
VCP-202ENST00000417448 SLC52A1Q9NWF4 448 aa28.02■■■□□ 2.08
VCP-202ENST00000417448 TMEM131LA2VDJ0 1609 aa28■■■□□ 2.07
VCP-202ENST00000417448 DIP2AQ14689 1571 aa28■■■□□ 2.07
VCP-202ENST00000417448 SRCAPQ6ZRS2 3230 aa28■■■□□ 2.07
VCP-202ENST00000417448 RIMS2Q9UQ26 1411 aa27.99■■■□□ 2.07
VCP-202ENST00000417448 NCOA3Q9Y6Q9 1424 aa27.99■■■□□ 2.07
VCP-202ENST00000417448 CHIC2Q9UKJ5 165 aa27.97■■■□□ 2.07
VCP-202ENST00000417448 ANKRD30AQ9BXX3 1397 aa27.97■■■□□ 2.07
VCP-202ENST00000417448 RPRD2Q5VT52 1461 aaKnown RBP27.95■■■□□ 2.07
VCP-202ENST00000417448 CDK12Q9NYV4 1490 aaPredicted RBP27.94■■■□□ 2.06
VCP-202ENST00000417448 ADAMTS13Q76LX8 1427 aa27.93■■■□□ 2.06
VCP-202ENST00000417448 PPP1R15AO75807 674 aaPredicted RBP27.93■■■□□ 2.06
VCP-202ENST00000417448 RXRBP28702 533 aa27.93■■■□□ 2.06
VCP-202ENST00000417448 TBX22Q9Y458 520 aa27.93■■■□□ 2.06
VCP-202ENST00000417448 C14orf37Q86TY3 774 aa27.92■■■□□ 2.06
VCP-202ENST00000417448 CADPS2Q86UW7 1296 aa27.9■■■□□ 2.06
VCP-202ENST00000417448 C19orf44Q9H6X5 657 aa27.89■■■□□ 2.06
VCP-202ENST00000417448 BRINP3Q76B58 766 aa27.87■■■□□ 2.05
VCP-202ENST00000417448 ADGRL2O95490 1459 aa27.87■■■□□ 2.05
VCP-202ENST00000417448 NUTM2BA6NNL0 878 aaPredicted RBP27.86■■■□□ 2.05
VCP-202ENST00000417448 NUTM2EB1AL46 878 aaPredicted RBP27.86■■■□□ 2.05
VCP-202ENST00000417448 ATF3P18847 181 aa27.86■■■□□ 2.05
VCP-202ENST00000417448 APLP2Q06481 763 aa27.86■■■□□ 2.05
VCP-202ENST00000417448 NUTM2AQ8IVF1 878 aaPredicted RBP27.86■■■□□ 2.05
VCP-202ENST00000417448 AFF2P51816 1311 aa27.85■■■□□ 2.05
VCP-202ENST00000417448 NUTM2DQ5VT03 806 aaPredicted RBP27.84■■■□□ 2.05
VCP-202ENST00000417448 NHSL1Q5SYE7 1610 aa27.84■■■□□ 2.05
VCP-202ENST00000417448 ASXL1Q8IXJ9 1541 aa27.83■■■□□ 2.05
VCP-202ENST00000417448 HDGFP51858 240 aaKnown RBP27.83■■■□□ 2.05
VCP-202ENST00000417448 RGS12O14924 1447 aa27.83■■■□□ 2.05
VCP-202ENST00000417448 PTPRUQ92729 1446 aa27.83■■■□□ 2.05
VCP-202ENST00000417448 PIK3R4Q99570 1358 aa27.82■■■□□ 2.04
VCP-202ENST00000417448 E9PCH4 1651 aa27.81■■■□□ 2.04
VCP-202ENST00000417448 SETD5Q9C0A6 1442 aa27.8■■■□□ 2.04
VCP-202ENST00000417448 TRPM2O94759 1503 aa27.8■■■□□ 2.04
VCP-202ENST00000417448 ANKRD50Q9ULJ7 1429 aa27.79■■■□□ 2.04
VCP-202ENST00000417448 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.79■■■□□ 2.04
VCP-202ENST00000417448 UNC13BO14795 1591 aa27.78■■■□□ 2.04
VCP-202ENST00000417448 DCCP43146 1447 aa27.77■■■□□ 2.04
VCP-202ENST00000417448 CHGAP10645 457 aaKnown RBP27.77■■■□□ 2.04
VCP-202ENST00000417448 XRN1Q8IZH2 1706 aaKnown RBP27.77■■■□□ 2.04
VCP-202ENST00000417448 PPARGC1BQ86YN6 1023 aaKnown RBP27.76■■■□□ 2.03
VCP-202ENST00000417448 AMOTL2Q9Y2J4 779 aa27.76■■■□□ 2.03
VCP-202ENST00000417448 MST1RQ04912 1400 aa27.75■■■□□ 2.03
VCP-202ENST00000417448 NRXN3Q9Y4C0 1643 aa27.75■■■□□ 2.03
VCP-202ENST00000417448 C8orf37Q96NL8 207 aa27.71■■■□□ 2.03
VCP-202ENST00000417448 QTRT2Q9H974 415 aaKnown RBP27.7■■■□□ 2.02
VCP-202ENST00000417448 RBM6P78332 1123 aaKnown RBP27.69■■■□□ 2.02
VCP-202ENST00000417448 PNPLA6Q8IY17 1366 aa27.69■■■□□ 2.02
VCP-202ENST00000417448 DDX17Q92841 729 aaKnown RBP27.68■■■□□ 2.02
VCP-202ENST00000417448 LRRC59Q96AG4 307 aaKnown RBP27.66■■■□□ 2.02
VCP-202ENST00000417448 NALCNQ8IZF0 1738 aa27.65■■■□□ 2.02
VCP-202ENST00000417448 IQGAP3Q86VI3 1631 aa27.65■■■□□ 2.02
VCP-202ENST00000417448 SETBP1Q9Y6X0 1596 aa27.65■■■□□ 2.02
VCP-202ENST00000417448 EP400Q96L91 3159 aa27.64■■■□□ 2.01
VCP-202ENST00000417448 FAM50AQ14320 339 aaKnown RBP27.6■■■□□ 2.01
VCP-202ENST00000417448 ADGRL3Q9HAR2 1447 aa27.59■■■□□ 2.01
VCP-202ENST00000417448 METP08581 1390 aa27.59■■■□□ 2.01
VCP-202ENST00000417448 LAMC1P11047 1609 aa27.58■■■□□ 2.01
VCP-202ENST00000417448 ADAMTS2O95450 1211 aa27.57■■■□□ 2
VCP-202ENST00000417448 ATAD2Q6PL18 1390 aa27.57■■■□□ 2
VCP-202ENST00000417448 NGLY1Q96IV0 654 aa27.55■■■□□ 2
VCP-202ENST00000417448 SPHKAPQ2M3C7 1700 aa27.51■■□□□ 1.99
VCP-202ENST00000417448 C1orf167Q5SNV9 1468 aa27.51■■□□□ 1.99
VCP-202ENST00000417448 USP21Q9UK80 565 aa27.49■■□□□ 1.99
VCP-202ENST00000417448 ATRNO75882 1429 aa27.46■■□□□ 1.99
VCP-202ENST00000417448 NUP155O75694 1391 aa27.46■■□□□ 1.99
VCP-202ENST00000417448 COL22A1Q8NFW1 1626 aaPredicted RBP27.45■■□□□ 1.99
VCP-202ENST00000417448 SOS2Q07890 1332 aaPredicted RBP27.45■■□□□ 1.99
VCP-202ENST00000417448 ZRANB1Q9UGI0 708 aa27.45■■□□□ 1.98
VCP-202ENST00000417448 TRPC5Q9UL62 973 aaPredicted RBP27.45■■□□□ 1.98
VCP-202ENST00000417448 NEXMIFQ5QGS0 1516 aa27.45■■□□□ 1.98
VCP-202ENST00000417448 FNBP4Q8N3X1 1017 aaPredicted RBP27.44■■□□□ 1.98
VCP-202ENST00000417448 PTCH1Q13635 1447 aa27.43■■□□□ 1.98
VCP-202ENST00000417448 ROCK1Q13464 1354 aa27.43■■□□□ 1.98
VCP-202ENST00000417448 ORAI2Q96SN7 254 aa27.42■■□□□ 1.98
VCP-202ENST00000417448 ZNF326Q5BKZ1 582 aaKnown RBP27.41■■□□□ 1.98
VCP-202ENST00000417448 MARF1Q9Y4F3 1742 aaKnown RBP27.4■■□□□ 1.98
VCP-202ENST00000417448 CLTCL1P53675 1640 aa27.39■■□□□ 1.98
VCP-202ENST00000417448 MYOM2P54296 1465 aa27.37■■□□□ 1.97
VCP-202ENST00000417448 BCL9LQ86UU0 1499 aa27.37■■□□□ 1.97
VCP-202ENST00000417448 ROBO2Q9HCK4 1378 aa27.35■■□□□ 1.97
VCP-202ENST00000417448 FOXD1Q16676 465 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms