RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 VGFO15240 615 aaPredicted RBP20.38■□□□□ 0.85
SF3B1-204ENST00000414963 THEMISQ8N1K5 641 aaPredicted RBP20.38■□□□□ 0.85
SF3B1-204ENST00000414963 NRXN1Q9ULB1 1477 aa20.37■□□□□ 0.85
SF3B1-204ENST00000414963 UBR1Q8IWV7 1749 aa20.37■□□□□ 0.85
SF3B1-204ENST00000414963 IFT172Q9UG01 1749 aa20.37■□□□□ 0.85
SF3B1-204ENST00000414963 TMEM2Q9UHN6 1383 aa20.36■□□□□ 0.85
SF3B1-204ENST00000414963 CEP170BQ9Y4F5 1589 aaPredicted RBP20.35■□□□□ 0.85
SF3B1-204ENST00000414963 HDGFP51858 240 aaKnown RBP20.35■□□□□ 0.85
SF3B1-204ENST00000414963 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.35■□□□□ 0.85
SF3B1-204ENST00000414963 RIMS2Q9UQ26 1411 aa20.35■□□□□ 0.85
SF3B1-204ENST00000414963 PPLO60437 1756 aa20.34■□□□□ 0.85
SF3B1-204ENST00000414963 ADGRF5Q8IZF2 1346 aa20.34■□□□□ 0.85
SF3B1-204ENST00000414963 MYO5BQ9ULV0 1848 aa20.34■□□□□ 0.85
SF3B1-204ENST00000414963 ZNF142P52746 1687 aaPredicted RBP20.33■□□□□ 0.85
SF3B1-204ENST00000414963 ARHGAP23Q9P227 1491 aa20.33■□□□□ 0.85
SF3B1-204ENST00000414963 SLIT1O75093 1534 aa20.32■□□□□ 0.84
SF3B1-204ENST00000414963 PIK3C2GO75747 1445 aa20.3■□□□□ 0.84
SF3B1-204ENST00000414963 RALGAPBQ86X10 1494 aa20.3■□□□□ 0.84
SF3B1-204ENST00000414963 C14orf93Q9H972 538 aaKnown RBP20.28■□□□□ 0.84
SF3B1-204ENST00000414963 GPRASP1Q5JY77 1395 aa20.27■□□□□ 0.84
SF3B1-204ENST00000414963 EID1Q9Y6B2 187 aa20.27■□□□□ 0.84
SF3B1-204ENST00000414963 LTKP29376 864 aa20.26■□□□□ 0.83
SF3B1-204ENST00000414963 NUTM2DQ5VT03 806 aaPredicted RBP20.26■□□□□ 0.83
SF3B1-204ENST00000414963 TRPM1Q7Z4N2 1603 aa20.25■□□□□ 0.83
SF3B1-204ENST00000414963 TXNDC2Q86VQ3 553 aa20.25■□□□□ 0.83
SF3B1-204ENST00000414963 KIAA1210Q9ULL0 1709 aa20.24■□□□□ 0.83
SF3B1-204ENST00000414963 PLEKHG1Q9ULL1 1385 aa20.23■□□□□ 0.83
SF3B1-204ENST00000414963 NBPF1Q3BBV0 1214 aa20.23■□□□□ 0.83
SF3B1-204ENST00000414963 CFAP70Q5T0N1 1121 aa20.23■□□□□ 0.83
SF3B1-204ENST00000414963 ANKLE2Q86XL3 938 aa20.22■□□□□ 0.83
SF3B1-204ENST00000414963 SCAF11Q99590 1463 aaKnown RBP20.22■□□□□ 0.83
SF3B1-204ENST00000414963 ROCK2O75116 1388 aaKnown RBP20.21■□□□□ 0.83
SF3B1-204ENST00000414963 CARD11Q9BXL7 1154 aa20.2■□□□□ 0.82
SF3B1-204ENST00000414963 SETBP1Q9Y6X0 1596 aa20.2■□□□□ 0.82
SF3B1-204ENST00000414963 LAMC1P11047 1609 aa20.19■□□□□ 0.82
SF3B1-204ENST00000414963 LMTK3Q96Q04 1460 aa20.18■□□□□ 0.82
SF3B1-204ENST00000414963 ALKQ9UM73 1620 aa20.16■□□□□ 0.82
SF3B1-204ENST00000414963 EIF4G2P78344 907 aaKnown RBP eCLIP20.16■□□□□ 0.82
SF3B1-204ENST00000414963 MED14O60244 1454 aa20.16■□□□□ 0.82
SF3B1-204ENST00000414963 ADGRB1O14514 1584 aa20.16■□□□□ 0.82
SF3B1-204ENST00000414963 ADAMTS13Q76LX8 1427 aa20.15■□□□□ 0.82
SF3B1-204ENST00000414963 NRXN3Q9Y4C0 1643 aa20.15■□□□□ 0.82
SF3B1-204ENST00000414963 TBX22Q9Y458 520 aa20.14■□□□□ 0.81
SF3B1-204ENST00000414963 USP47Q96K76 1375 aa20.12■□□□□ 0.81
SF3B1-204ENST00000414963 HSPA5P11021 654 aaKnown RBP20.11■□□□□ 0.81
SF3B1-204ENST00000414963 TMEM132EQ6IEE7 984 aa20.11■□□□□ 0.81
SF3B1-204ENST00000414963 BCANQ96GW7 911 aa20.1■□□□□ 0.81
SF3B1-204ENST00000414963 ASXL1Q8IXJ9 1541 aa20.1■□□□□ 0.81
SF3B1-204ENST00000414963 SETD1AO15047 1707 aaKnown RBP20.1■□□□□ 0.81
SF3B1-204ENST00000414963 DIP2AQ14689 1571 aa20.09■□□□□ 0.81
SF3B1-204ENST00000414963 NCKAP5LQ9HCH0 1330 aa20.09■□□□□ 0.81
SF3B1-204ENST00000414963 IQGAP1P46940 1657 aa20.09■□□□□ 0.81
SF3B1-204ENST00000414963 NPHP4O75161 1426 aaPredicted RBP20.09■□□□□ 0.81
SF3B1-204ENST00000414963 METP08581 1390 aa20.08■□□□□ 0.81
SF3B1-204ENST00000414963 HSPA2P54652 639 aa20.08■□□□□ 0.81
SF3B1-204ENST00000414963 LRPPRCP42704 1394 aaKnown RBP20.08■□□□□ 0.8
SF3B1-204ENST00000414963 ZNF316A6NFI3 1004 aaPredicted RBP20.07■□□□□ 0.8
SF3B1-204ENST00000414963 SLC26A8Q96RN1 970 aa20.07■□□□□ 0.8
SF3B1-204ENST00000414963 SENP3Q9H4L4 574 aaPredicted RBP20.07■□□□□ 0.8
SF3B1-204ENST00000414963 YTHDC2Q9H6S0 1430 aaKnown RBP20.07■□□□□ 0.8
SF3B1-204ENST00000414963 ABCC11Q96J66 1382 aa20.07■□□□□ 0.8
SF3B1-204ENST00000414963 PIK3R4Q99570 1358 aa20.07■□□□□ 0.8
SF3B1-204ENST00000414963 POLR1AO95602 1720 aaPredicted RBP20.05■□□□□ 0.8
SF3B1-204ENST00000414963 SIRT1Q96EB6 747 aa20.05■□□□□ 0.8
SF3B1-204ENST00000414963 EIF3AQ14152 1382 aaKnown RBP20.05■□□□□ 0.8
SF3B1-204ENST00000414963 ST20-MTHFSA0A0A6YYL1 179 aa20.04■□□□□ 0.8
SF3B1-204ENST00000414963 TECPR2O15040 1411 aa20.02■□□□□ 0.8
SF3B1-204ENST00000414963 TRAK1Q9UPV9 953 aa20.02■□□□□ 0.8
SF3B1-204ENST00000414963 DLC1Q96QB1 1528 aa20.02■□□□□ 0.79
SF3B1-204ENST00000414963 SLC24A1O60721 1099 aa20■□□□□ 0.79
SF3B1-204ENST00000414963 TESK2Q96S53 571 aa20■□□□□ 0.79
SF3B1-204ENST00000414963 HIRIP3Q9BW71 556 aaPredicted RBP20■□□□□ 0.79
SF3B1-204ENST00000414963 STK26Q9P289 416 aa20■□□□□ 0.79
SF3B1-204ENST00000414963 PTPRUQ92729 1446 aa20■□□□□ 0.79
SF3B1-204ENST00000414963 SBNO2Q9Y2G9 1366 aa19.98■□□□□ 0.79
SF3B1-204ENST00000414963 FAM135BQ49AJ0 1406 aa19.98■□□□□ 0.79
SF3B1-204ENST00000414963 CENPJQ9HC77 1338 aaPredicted RBP19.98■□□□□ 0.79
SF3B1-204ENST00000414963 STRCQ7RTU9 1775 aa19.98■□□□□ 0.79
SF3B1-204ENST00000414963 AMOTL2Q9Y2J4 779 aa19.97■□□□□ 0.79
SF3B1-204ENST00000414963 KNDC1Q76NI1 1749 aa19.96■□□□□ 0.79
SF3B1-204ENST00000414963 ARHGEF28Q8N1W1 1705 aaKnown RBP19.95■□□□□ 0.78
SF3B1-204ENST00000414963 CPS1P31327 1500 aa19.95■□□□□ 0.78
SF3B1-204ENST00000414963 KCNA6P17658 529 aa19.94■□□□□ 0.78
SF3B1-204ENST00000414963 PRAM1Q96QH2 718 aa19.94■□□□□ 0.78
SF3B1-204ENST00000414963 DMRT2Q9Y5R5 561 aa19.94■□□□□ 0.78
SF3B1-204ENST00000414963 PTCH1Q13635 1447 aa19.93■□□□□ 0.78
SF3B1-204ENST00000414963 C11orf95C9JLR9 678 aaPredicted RBP19.93■□□□□ 0.78
SF3B1-204ENST00000414963 POGKQ9P215 609 aa19.93■□□□□ 0.78
SF3B1-204ENST00000414963 ROBO2Q9HCK4 1378 aa19.93■□□□□ 0.78
SF3B1-204ENST00000414963 XRN1Q8IZH2 1706 aaKnown RBP19.93■□□□□ 0.78
SF3B1-204ENST00000414963 CHD2O14647 1828 aaKnown RBP19.91■□□□□ 0.78
SF3B1-204ENST00000414963 TMF1P82094 1093 aa19.91■□□□□ 0.78
SF3B1-204ENST00000414963 WAPLQ7Z5K2 1190 aa19.9■□□□□ 0.78
SF3B1-204ENST00000414963 NWD1Q149M9 1564 aa19.89■□□□□ 0.77
SF3B1-204ENST00000414963 WASHC2AQ641Q2 1341 aa19.89■□□□□ 0.77
SF3B1-204ENST00000414963 CCDC7Q96M83 1385 aa19.89■□□□□ 0.77
SF3B1-204ENST00000414963 PLEKHH1Q9ULM0 1364 aa19.89■□□□□ 0.77
SF3B1-204ENST00000414963 CDCA8Q53HL2 280 aa19.88■□□□□ 0.77
SF3B1-204ENST00000414963 AEBP2Q6ZN18 517 aaPredicted RBP19.88■□□□□ 0.77
SF3B1-204ENST00000414963 PUS7Q96PZ0 661 aaKnown RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms