RNA–Protein interactions for RNA: ENST00000413232.5

CPSF7-204, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 3

Gene CPSF7, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-204ENST00000413232 MED1Q15648 1581 aaPredicted RBP29.54■■■□□ 2.32
CPSF7-204ENST00000413232 ZFYVE9O95405 1425 aa29.53■■■□□ 2.32
CPSF7-204ENST00000413232 IQGAP3Q86VI3 1631 aa29.53■■■□□ 2.32
CPSF7-204ENST00000413232 KCNA6P17658 529 aa29.51■■■□□ 2.31
CPSF7-204ENST00000413232 RBM33Q96EV2 1170 aaKnown RBP29.5■■■□□ 2.31
CPSF7-204ENST00000413232 TMEM94Q12767 1356 aa29.48■■■□□ 2.31
CPSF7-204ENST00000413232 RIMS2Q9UQ26 1411 aa29.46■■■□□ 2.31
CPSF7-204ENST00000413232 NUP155O75694 1391 aa29.45■■■□□ 2.31
CPSF7-204ENST00000413232 NWD1Q149M9 1564 aa29.44■■■□□ 2.3
CPSF7-204ENST00000413232 CHD2O14647 1828 aaKnown RBP29.44■■■□□ 2.3
CPSF7-204ENST00000413232 BCANQ96GW7 911 aa29.44■■■□□ 2.3
CPSF7-204ENST00000413232 PROSER2Q86WR7 435 aaPredicted RBP29.43■■■□□ 2.3
CPSF7-204ENST00000413232 PLEKHG1Q9ULL1 1385 aa29.42■■■□□ 2.3
CPSF7-204ENST00000413232 CHGAP10645 457 aaKnown RBP29.42■■■□□ 2.3
CPSF7-204ENST00000413232 NUTM2DQ5VT03 806 aaPredicted RBP29.4■■■□□ 2.3
CPSF7-204ENST00000413232 NKTRP30414 1462 aaKnown RBP29.37■■■□□ 2.29
CPSF7-204ENST00000413232 PPP1R15AO75807 674 aaPredicted RBP29.37■■■□□ 2.29
CPSF7-204ENST00000413232 FAM135BQ49AJ0 1406 aa29.35■■■□□ 2.29
CPSF7-204ENST00000413232 HDGFP51858 240 aaKnown RBP29.34■■■□□ 2.29
CPSF7-204ENST00000413232 ADAMTS13Q76LX8 1427 aa29.33■■■□□ 2.29
CPSF7-204ENST00000413232 RRBP1Q9P2E9 1410 aaKnown RBP29.33■■■□□ 2.29
CPSF7-204ENST00000413232 ROBO1Q9Y6N7 1651 aa29.32■■■□□ 2.28
CPSF7-204ENST00000413232 TBX22Q9Y458 520 aa29.32■■■□□ 2.28
CPSF7-204ENST00000413232 SPHKAPQ2M3C7 1700 aa29.31■■■□□ 2.28
CPSF7-204ENST00000413232 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.31■■■□□ 2.28
CPSF7-204ENST00000413232 MSH6P52701 1360 aa29.26■■■□□ 2.27
CPSF7-204ENST00000413232 PHF23Q9BUL5 403 aaPredicted RBP29.25■■■□□ 2.27
CPSF7-204ENST00000413232 NAIPQ13075 1403 aa29.25■■■□□ 2.27
CPSF7-204ENST00000413232 DIP2AQ14689 1571 aa29.22■■■□□ 2.27
CPSF7-204ENST00000413232 NRXN3Q9Y4C0 1643 aa29.21■■■□□ 2.27
CPSF7-204ENST00000413232 SLAIN2Q9P270 581 aa29.21■■■□□ 2.27
CPSF7-204ENST00000413232 PTPRUQ92729 1446 aa29.2■■■□□ 2.27
CPSF7-204ENST00000413232 RGS17Q9UGC6 210 aaPredicted RBP29.2■■■□□ 2.26
CPSF7-204ENST00000413232 CLTCL1P53675 1640 aa29.19■■■□□ 2.26
CPSF7-204ENST00000413232 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.17■■■□□ 2.26
CPSF7-204ENST00000413232 PIK3R4Q99570 1358 aa29.17■■■□□ 2.26
CPSF7-204ENST00000413232 TRPM2O94759 1503 aa29.15■■■□□ 2.26
CPSF7-204ENST00000413232 PHLPP1O60346 1717 aa29.14■■■□□ 2.26
CPSF7-204ENST00000413232 NCOA3Q9Y6Q9 1424 aa29.14■■■□□ 2.26
CPSF7-204ENST00000413232 AMOTL2Q9Y2J4 779 aa29.14■■■□□ 2.26
CPSF7-204ENST00000413232 ZNF326Q5BKZ1 582 aaKnown RBP29.13■■■□□ 2.25
CPSF7-204ENST00000413232 SETBP1Q9Y6X0 1596 aa29.13■■■□□ 2.25
CPSF7-204ENST00000413232 KIF1BO60333 1816 aa29.11■■■□□ 2.25
CPSF7-204ENST00000413232 C14orf37Q86TY3 774 aa29.11■■■□□ 2.25
CPSF7-204ENST00000413232 XRN1Q8IZH2 1706 aaKnown RBP29.1■■■□□ 2.25
CPSF7-204ENST00000413232 NEXMIFQ5QGS0 1516 aa29.1■■■□□ 2.25
CPSF7-204ENST00000413232 HFM1A2PYH4 1435 aa29.09■■■□□ 2.25
CPSF7-204ENST00000413232 C19orf44Q9H6X5 657 aa29.08■■■□□ 2.25
CPSF7-204ENST00000413232 METP08581 1390 aa29.08■■■□□ 2.25
CPSF7-204ENST00000413232 COL16A1Q07092 1604 aaPredicted RBP29.06■■■□□ 2.24
CPSF7-204ENST00000413232 TRIM52Q96A61 297 aa29.06■■■□□ 2.24
CPSF7-204ENST00000413232 CADPS2Q86UW7 1296 aa29.03■■■□□ 2.24
CPSF7-204ENST00000413232 ATF3P18847 181 aa29.02■■■□□ 2.24
CPSF7-204ENST00000413232 POTEAQ6S8J7 498 aa29■■■□□ 2.23
CPSF7-204ENST00000413232 JCADQ9P266 1359 aa28.99■■■□□ 2.23
CPSF7-204ENST00000413232 SLC4A1APQ9BWU0 796 aaKnown RBP28.98■■■□□ 2.23
CPSF7-204ENST00000413232 AHDC1Q5TGY3 1603 aaPredicted RBP28.97■■■□□ 2.23
CPSF7-204ENST00000413232 SETD1AO15047 1707 aaKnown RBP28.97■■■□□ 2.23
CPSF7-204ENST00000413232 FOXD1Q16676 465 aa28.95■■■□□ 2.22
CPSF7-204ENST00000413232 BRINP3Q76B58 766 aa28.95■■■□□ 2.22
CPSF7-204ENST00000413232 DCCP43146 1447 aa28.93■■■□□ 2.22
CPSF7-204ENST00000413232 PPLO60437 1756 aa28.92■■■□□ 2.22
CPSF7-204ENST00000413232 NALCNQ8IZF0 1738 aa28.91■■■□□ 2.22
CPSF7-204ENST00000413232 MST1RQ04912 1400 aa28.91■■■□□ 2.22
CPSF7-204ENST00000413232 LRP6O75581 1613 aa28.91■■■□□ 2.22
CPSF7-204ENST00000413232 VGFO15240 615 aaPredicted RBP28.88■■■□□ 2.21
CPSF7-204ENST00000413232 SHPRHQ149N8 1683 aa28.88■■■□□ 2.21
CPSF7-204ENST00000413232 ADGRL3Q9HAR2 1447 aa28.87■■■□□ 2.21
CPSF7-204ENST00000413232 ASXL1Q8IXJ9 1541 aa28.87■■■□□ 2.21
CPSF7-204ENST00000413232 NHSL1Q5SYE7 1610 aa28.84■■■□□ 2.21
CPSF7-204ENST00000413232 RPGRIP1LQ68CZ1 1315 aa28.84■■■□□ 2.21
CPSF7-204ENST00000413232 SPATA31A6Q5VVP1 1343 aa28.83■■■□□ 2.21
CPSF7-204ENST00000413232 ROBO2Q9HCK4 1378 aa28.83■■■□□ 2.21
CPSF7-204ENST00000413232 DDX17Q92841 729 aaKnown RBP28.82■■■□□ 2.2
CPSF7-204ENST00000413232 MPHOSPH9Q99550 1183 aa28.8■■■□□ 2.2
CPSF7-204ENST00000413232 PTCH1Q13635 1447 aa28.78■■■□□ 2.2
CPSF7-204ENST00000413232 SETD5Q9C0A6 1442 aa28.77■■■□□ 2.2
CPSF7-204ENST00000413232 ADGRF5Q8IZF2 1346 aa28.76■■■□□ 2.19
CPSF7-204ENST00000413232 SPATA31E1Q6ZUB1 1445 aa28.76■■■□□ 2.19
CPSF7-204ENST00000413232 IFT172Q9UG01 1749 aa28.75■■■□□ 2.19
CPSF7-204ENST00000413232 RGL3Q3MIN7 710 aa28.75■■■□□ 2.19
CPSF7-204ENST00000413232 PRAG1Q86YV5 1406 aa28.75■■■□□ 2.19
CPSF7-204ENST00000413232 C1orf167Q5SNV9 1468 aa28.74■■■□□ 2.19
CPSF7-204ENST00000413232 CCDC144AA2RUR9 1427 aa28.74■■■□□ 2.19
CPSF7-204ENST00000413232 NUTM2BA6NNL0 878 aaPredicted RBP28.73■■■□□ 2.19
CPSF7-204ENST00000413232 NUTM2EB1AL46 878 aaPredicted RBP28.73■■■□□ 2.19
CPSF7-204ENST00000413232 MEX3CQ5U5Q3 659 aaKnown RBP28.73■■■□□ 2.19
CPSF7-204ENST00000413232 NUTM2AQ8IVF1 878 aaPredicted RBP28.73■■■□□ 2.19
CPSF7-204ENST00000413232 ORAI2Q96SN7 254 aa28.69■■■□□ 2.18
CPSF7-204ENST00000413232 LRRC59Q96AG4 307 aaKnown RBP28.68■■■□□ 2.18
CPSF7-204ENST00000413232 LAMC1P11047 1609 aa28.67■■■□□ 2.18
CPSF7-204ENST00000413232 PNPLA6Q8IY17 1366 aa28.65■■■□□ 2.18
CPSF7-204ENST00000413232 ZNF772Q68DY9 489 aaPredicted RBP28.64■■■□□ 2.18
CPSF7-204ENST00000413232 ANKRD30BQ9BXX2 1392 aa28.62■■■□□ 2.17
CPSF7-204ENST00000413232 TMEM132EQ6IEE7 984 aa28.62■■■□□ 2.17
CPSF7-204ENST00000413232 STK26Q9P289 416 aa28.62■■■□□ 2.17
CPSF7-204ENST00000413232 WAPLQ7Z5K2 1190 aa28.61■■■□□ 2.17
CPSF7-204ENST00000413232 SOS2Q07890 1332 aaPredicted RBP28.6■■■□□ 2.17
CPSF7-204ENST00000413232 PIK3C2GO75747 1445 aa28.6■■■□□ 2.17
CPSF7-204ENST00000413232 AFF2P51816 1311 aa28.59■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms