RNA–Protein interactions for RNA: ENST00000412847.5

PTPRN-203, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-203ENST00000412847 ADGRL2O95490 1459 aa20.3■□□□□ 0.84
PTPRN-203ENST00000412847 PROSER2Q86WR7 435 aaPredicted RBP20.29■□□□□ 0.84
PTPRN-203ENST00000412847 RPRD2Q5VT52 1461 aaKnown RBP20.29■□□□□ 0.84
PTPRN-203ENST00000412847 COL16A1Q07092 1604 aaPredicted RBP20.28■□□□□ 0.84
PTPRN-203ENST00000412847 MSH6P52701 1360 aa20.27■□□□□ 0.84
PTPRN-203ENST00000412847 APLP2Q06481 763 aa20.27■□□□□ 0.84
PTPRN-203ENST00000412847 CHIC2Q9UKJ5 165 aa20.27■□□□□ 0.84
PTPRN-203ENST00000412847 RBM33Q96EV2 1170 aaKnown RBP20.26■□□□□ 0.83
PTPRN-203ENST00000412847 UNC13BO14795 1591 aa20.25■□□□□ 0.83
PTPRN-203ENST00000412847 POTEAQ6S8J7 498 aa20.25■□□□□ 0.83
PTPRN-203ENST00000412847 ZFYVE9O95405 1425 aa20.25■□□□□ 0.83
PTPRN-203ENST00000412847 E9PCH4 1651 aa20.25■□□□□ 0.83
PTPRN-203ENST00000412847 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.24■□□□□ 0.83
PTPRN-203ENST00000412847 SHPRHQ149N8 1683 aa20.23■□□□□ 0.83
PTPRN-203ENST00000412847 SLC52A1Q9NWF4 448 aa20.23■□□□□ 0.83
PTPRN-203ENST00000412847 PLEKHG1Q9ULL1 1385 aa20.22■□□□□ 0.83
PTPRN-203ENST00000412847 DIP2AQ14689 1571 aa20.22■□□□□ 0.83
PTPRN-203ENST00000412847 BCANQ96GW7 911 aa20.22■□□□□ 0.83
PTPRN-203ENST00000412847 JCADQ9P266 1359 aa20.21■□□□□ 0.83
PTPRN-203ENST00000412847 RIMS2Q9UQ26 1411 aa20.2■□□□□ 0.82
PTPRN-203ENST00000412847 ANKRD50Q9ULJ7 1429 aa20.19■□□□□ 0.82
PTPRN-203ENST00000412847 AHDC1Q5TGY3 1603 aaPredicted RBP20.18■□□□□ 0.82
PTPRN-203ENST00000412847 IQGAP3Q86VI3 1631 aa20.17■□□□□ 0.82
PTPRN-203ENST00000412847 SLAIN2Q9P270 581 aa20.17■□□□□ 0.82
PTPRN-203ENST00000412847 PPP1R15AO75807 674 aaPredicted RBP20.16■□□□□ 0.82
PTPRN-203ENST00000412847 NCOA3Q9Y6Q9 1424 aa20.15■□□□□ 0.82
PTPRN-203ENST00000412847 LRP6O75581 1613 aa20.15■□□□□ 0.82
PTPRN-203ENST00000412847 TRPM2O94759 1503 aa20.13■□□□□ 0.81
PTPRN-203ENST00000412847 HDGFP51858 240 aaKnown RBP20.13■□□□□ 0.81
PTPRN-203ENST00000412847 ADAMTS13Q76LX8 1427 aa20.11■□□□□ 0.81
PTPRN-203ENST00000412847 SPHKAPQ2M3C7 1700 aa20.11■□□□□ 0.81
PTPRN-203ENST00000412847 XRN1Q8IZH2 1706 aaKnown RBP20.1■□□□□ 0.81
PTPRN-203ENST00000412847 FAM50AQ14320 339 aaKnown RBP20.1■□□□□ 0.81
PTPRN-203ENST00000412847 TBX22Q9Y458 520 aa20.1■□□□□ 0.81
PTPRN-203ENST00000412847 NHSL1Q5SYE7 1610 aa20.09■□□□□ 0.81
PTPRN-203ENST00000412847 C14orf37Q86TY3 774 aa20.09■□□□□ 0.81
PTPRN-203ENST00000412847 NRXN3Q9Y4C0 1643 aa20.09■□□□□ 0.81
PTPRN-203ENST00000412847 PIK3R4Q99570 1358 aa20.08■□□□□ 0.81
PTPRN-203ENST00000412847 SPATA31A6Q5VVP1 1343 aa20.08■□□□□ 0.81
PTPRN-203ENST00000412847 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.08■□□□□ 0.81
PTPRN-203ENST00000412847 CHGAP10645 457 aaKnown RBP20.07■□□□□ 0.8
PTPRN-203ENST00000412847 MEX3CQ5U5Q3 659 aaKnown RBP20.05■□□□□ 0.8
PTPRN-203ENST00000412847 CADPS2Q86UW7 1296 aa20.05■□□□□ 0.8
PTPRN-203ENST00000412847 NUTM2DQ5VT03 806 aaPredicted RBP20.03■□□□□ 0.8
PTPRN-203ENST00000412847 SETBP1Q9Y6X0 1596 aa20.03■□□□□ 0.8
PTPRN-203ENST00000412847 ASXL1Q8IXJ9 1541 aa20.02■□□□□ 0.8
PTPRN-203ENST00000412847 NALCNQ8IZF0 1738 aa20.02■□□□□ 0.8
PTPRN-203ENST00000412847 ATF3P18847 181 aa20.02■□□□□ 0.8
PTPRN-203ENST00000412847 ZNF772Q68DY9 489 aaPredicted RBP20.02■□□□□ 0.8
PTPRN-203ENST00000412847 DCCP43146 1447 aa20.02■□□□□ 0.79
PTPRN-203ENST00000412847 C19orf44Q9H6X5 657 aa20.01■□□□□ 0.79
PTPRN-203ENST00000412847 PTPRUQ92729 1446 aa20.01■□□□□ 0.79
PTPRN-203ENST00000412847 KIF1BO60333 1816 aa20■□□□□ 0.79
PTPRN-203ENST00000412847 ROCK1Q13464 1354 aa19.99■□□□□ 0.79
PTPRN-203ENST00000412847 TRIM52Q96A61 297 aa19.98■□□□□ 0.79
PTPRN-203ENST00000412847 CDK12Q9NYV4 1490 aaPredicted RBP19.97■□□□□ 0.79
PTPRN-203ENST00000412847 BRINP3Q76B58 766 aa19.96■□□□□ 0.79
PTPRN-203ENST00000412847 AMOTL2Q9Y2J4 779 aa19.96■□□□□ 0.79
PTPRN-203ENST00000412847 MST1RQ04912 1400 aa19.95■□□□□ 0.78
PTPRN-203ENST00000412847 UPF1Q92900 1129 aaKnown RBP eCLIP19.95■□□□□ 0.78
PTPRN-203ENST00000412847 CLTCL1P53675 1640 aa19.94■□□□□ 0.78
PTPRN-203ENST00000412847 SETD5Q9C0A6 1442 aa19.93■□□□□ 0.78
PTPRN-203ENST00000412847 NUP155O75694 1391 aa19.93■□□□□ 0.78
PTPRN-203ENST00000412847 NEXMIFQ5QGS0 1516 aa19.92■□□□□ 0.78
PTPRN-203ENST00000412847 LAMC1P11047 1609 aa19.91■□□□□ 0.78
PTPRN-203ENST00000412847 NUTM2BA6NNL0 878 aaPredicted RBP19.91■□□□□ 0.78
PTPRN-203ENST00000412847 NUTM2EB1AL46 878 aaPredicted RBP19.91■□□□□ 0.78
PTPRN-203ENST00000412847 RXRBP28702 533 aa19.91■□□□□ 0.78
PTPRN-203ENST00000412847 NUTM2AQ8IVF1 878 aaPredicted RBP19.91■□□□□ 0.78
PTPRN-203ENST00000412847 ADGRL3Q9HAR2 1447 aa19.9■□□□□ 0.78
PTPRN-203ENST00000412847 AFF2P51816 1311 aa19.89■□□□□ 0.77
PTPRN-203ENST00000412847 METP08581 1390 aa19.86■□□□□ 0.77
PTPRN-203ENST00000412847 RGS12O14924 1447 aa19.85■□□□□ 0.77
PTPRN-203ENST00000412847 MARF1Q9Y4F3 1742 aaKnown RBP19.85■□□□□ 0.77
PTPRN-203ENST00000412847 PNPLA6Q8IY17 1366 aa19.84■□□□□ 0.77
PTPRN-203ENST00000412847 ZNF326Q5BKZ1 582 aaKnown RBP19.84■□□□□ 0.77
PTPRN-203ENST00000412847 LRRC59Q96AG4 307 aaKnown RBP19.83■□□□□ 0.77
PTPRN-203ENST00000412847 PPLO60437 1756 aa19.83■□□□□ 0.76
PTPRN-203ENST00000412847 ITGAEP38570 1179 aa19.82■□□□□ 0.76
PTPRN-203ENST00000412847 COL22A1Q8NFW1 1626 aaPredicted RBP19.81■□□□□ 0.76
PTPRN-203ENST00000412847 C8orf37Q96NL8 207 aa19.8■□□□□ 0.76
PTPRN-203ENST00000412847 DDX17Q92841 729 aaKnown RBP19.79■□□□□ 0.76
PTPRN-203ENST00000412847 C1orf167Q5SNV9 1468 aa19.79■□□□□ 0.76
PTPRN-203ENST00000412847 PTCH1Q13635 1447 aa19.78■□□□□ 0.76
PTPRN-203ENST00000412847 RBM6P78332 1123 aaKnown RBP19.77■□□□□ 0.76
PTPRN-203ENST00000412847 QTRT2Q9H974 415 aaKnown RBP19.75■□□□□ 0.75
PTPRN-203ENST00000412847 PRAG1Q86YV5 1406 aa19.73■□□□□ 0.75
PTPRN-203ENST00000412847 CDC42BPGQ6DT37 1551 aa19.73■□□□□ 0.75
PTPRN-203ENST00000412847 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.71■□□□□ 0.75
PTPRN-203ENST00000412847 ADAMTS2O95450 1211 aa19.71■□□□□ 0.75
PTPRN-203ENST00000412847 NGLY1Q96IV0 654 aa19.71■□□□□ 0.75
PTPRN-203ENST00000412847 ATAD2Q6PL18 1390 aa19.7■□□□□ 0.74
PTPRN-203ENST00000412847 IFT172Q9UG01 1749 aa19.7■□□□□ 0.74
PTPRN-203ENST00000412847 ROBO2Q9HCK4 1378 aa19.7■□□□□ 0.74
PTPRN-203ENST00000412847 SOS2Q07890 1332 aaPredicted RBP19.69■□□□□ 0.74
PTPRN-203ENST00000412847 KNDC1Q76NI1 1749 aa19.68■□□□□ 0.74
PTPRN-203ENST00000412847 HFM1A2PYH4 1435 aa19.67■□□□□ 0.74
PTPRN-203ENST00000412847 NAIPQ13075 1403 aa19.67■□□□□ 0.74
PTPRN-203ENST00000412847 ORAI2Q96SN7 254 aa19.66■□□□□ 0.74
PTPRN-203ENST00000412847 USP21Q9UK80 565 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms