RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 ZFYVE9O95405 1425 aa16.11■□□□□ 0.17
CHMP3-205ENST00000409810 PPP1R15AO75807 674 aaPredicted RBP16.1■□□□□ 0.17
CHMP3-205ENST00000409810 TRIM26Q12899 539 aaPredicted RBP16.09■□□□□ 0.17
CHMP3-205ENST00000409810 FOXD1Q16676 465 aa16.08■□□□□ 0.16
CHMP3-205ENST00000409810 ZNF326Q5BKZ1 582 aaKnown RBP16.08■□□□□ 0.16
CHMP3-205ENST00000409810 LTBP4Q8N2S1 1624 aa16.07■□□□□ 0.16
CHMP3-205ENST00000409810 PLEKHG1Q9ULL1 1385 aa16.06■□□□□ 0.16
CHMP3-205ENST00000409810 CPS1P31327 1500 aa16.05■□□□□ 0.16
CHMP3-205ENST00000409810 ZNF335Q9H4Z2 1342 aaPredicted RBP16.05■□□□□ 0.16
CHMP3-205ENST00000409810 BCANQ96GW7 911 aa16.05■□□□□ 0.16
CHMP3-205ENST00000409810 CERKQ8TCT0 537 aa16.04■□□□□ 0.16
CHMP3-205ENST00000409810 DIP2AQ14689 1571 aa16.04■□□□□ 0.16
CHMP3-205ENST00000409810 NEXMIFQ5QGS0 1516 aa16.04■□□□□ 0.16
CHMP3-205ENST00000409810 IQSEC2Q5JU85 1478 aa16.03■□□□□ 0.16
CHMP3-205ENST00000409810 PPLO60437 1756 aa16.03■□□□□ 0.16
CHMP3-205ENST00000409810 RPGRIP1LQ68CZ1 1315 aa16.01■□□□□ 0.15
CHMP3-205ENST00000409810 NUTM2DQ5VT03 806 aaPredicted RBP16■□□□□ 0.15
CHMP3-205ENST00000409810 STRCP1A6NGW2 1772 aa16■□□□□ 0.15
CHMP3-205ENST00000409810 SETBP1Q9Y6X0 1596 aa15.99■□□□□ 0.15
CHMP3-205ENST00000409810 IFT172Q9UG01 1749 aa15.99■□□□□ 0.15
CHMP3-205ENST00000409810 ANKRD30BQ9BXX2 1392 aa15.99■□□□□ 0.15
CHMP3-205ENST00000409810 SPATA31E1Q6ZUB1 1445 aa15.98■□□□□ 0.15
CHMP3-205ENST00000409810 SLC26A8Q96RN1 970 aa15.98■□□□□ 0.15
CHMP3-205ENST00000409810 CHD2O14647 1828 aaKnown RBP15.98■□□□□ 0.15
CHMP3-205ENST00000409810 NWD1Q149M9 1564 aa15.97■□□□□ 0.15
CHMP3-205ENST00000409810 VGFO15240 615 aaPredicted RBP15.97■□□□□ 0.15
CHMP3-205ENST00000409810 ADAMTS13Q76LX8 1427 aa15.96■□□□□ 0.15
CHMP3-205ENST00000409810 NRXN3Q9Y4C0 1643 aa15.96■□□□□ 0.15
CHMP3-205ENST00000409810 PIK3R4Q99570 1358 aa15.96■□□□□ 0.15
CHMP3-205ENST00000409810 TBX22Q9Y458 520 aa15.95■□□□□ 0.14
CHMP3-205ENST00000409810 NKTRP30414 1462 aaKnown RBP15.95■□□□□ 0.14
CHMP3-205ENST00000409810 KCNA6P17658 529 aa15.94■□□□□ 0.14
CHMP3-205ENST00000409810 RGL3Q3MIN7 710 aa15.94■□□□□ 0.14
CHMP3-205ENST00000409810 FBXO41Q8TF61 875 aa15.94■□□□□ 0.14
CHMP3-205ENST00000409810 SENP3Q9H4L4 574 aaPredicted RBP15.94■□□□□ 0.14
CHMP3-205ENST00000409810 LRRC7Q96NW7 1537 aa15.93■□□□□ 0.14
CHMP3-205ENST00000409810 SETD1AO15047 1707 aaKnown RBP15.9■□□□□ 0.14
CHMP3-205ENST00000409810 MYOM2P54296 1465 aa15.9■□□□□ 0.14
CHMP3-205ENST00000409810 XIRP1Q702N8 1843 aaKnown RBP15.89■□□□□ 0.13
CHMP3-205ENST00000409810 ALKQ9UM73 1620 aa15.89■□□□□ 0.13
CHMP3-205ENST00000409810 XRN1Q8IZH2 1706 aaKnown RBP15.88■□□□□ 0.13
CHMP3-205ENST00000409810 LAMC1P11047 1609 aa15.87■□□□□ 0.13
CHMP3-205ENST00000409810 DHX57Q6P158 1386 aaKnown RBP15.87■□□□□ 0.13
CHMP3-205ENST00000409810 PIK3C2GO75747 1445 aa15.86■□□□□ 0.13
CHMP3-205ENST00000409810 PROSER2Q86WR7 435 aaPredicted RBP15.86■□□□□ 0.13
CHMP3-205ENST00000409810 STAC3Q96MF2 364 aa15.86■□□□□ 0.13
CHMP3-205ENST00000409810 ADGRF5Q8IZF2 1346 aa15.86■□□□□ 0.13
CHMP3-205ENST00000409810 ILDR1Q86SU0 546 aaPredicted RBP15.85■□□□□ 0.13
CHMP3-205ENST00000409810 TMEM94Q12767 1356 aa15.85■□□□□ 0.13
CHMP3-205ENST00000409810 NRXN1Q9ULB1 1477 aa15.84■□□□□ 0.13
CHMP3-205ENST00000409810 UBAP1LF5GYI3 381 aa15.84■□□□□ 0.13
CHMP3-205ENST00000409810 TOM1O60784 492 aa15.84■□□□□ 0.13
CHMP3-205ENST00000409810 AMOTL2Q9Y2J4 779 aa15.84■□□□□ 0.13
CHMP3-205ENST00000409810 METP08581 1390 aa15.84■□□□□ 0.13
CHMP3-205ENST00000409810 PTPRUQ92729 1446 aa15.84■□□□□ 0.13
CHMP3-205ENST00000409810 NCOA3Q9Y6Q9 1424 aa15.84■□□□□ 0.13
CHMP3-205ENST00000409810 MSH6P52701 1360 aa15.82■□□□□ 0.12
CHMP3-205ENST00000409810 DCAF11Q8TEB1 546 aa15.81■□□□□ 0.12
CHMP3-205ENST00000409810 PCGF6Q9BYE7 350 aa15.81■□□□□ 0.12
CHMP3-205ENST00000409810 KNDC1Q76NI1 1749 aa15.8■□□□□ 0.12
CHMP3-205ENST00000409810 PTCH1Q13635 1447 aa15.8■□□□□ 0.12
CHMP3-205ENST00000409810 PRAG1Q86YV5 1406 aa15.79■□□□□ 0.12
CHMP3-205ENST00000409810 C14orf37Q86TY3 774 aa15.79■□□□□ 0.12
CHMP3-205ENST00000409810 KDM2AQ9Y2K7 1162 aa15.78■□□□□ 0.12
CHMP3-205ENST00000409810 C14orf93Q9H972 538 aaKnown RBP15.77■□□□□ 0.12
CHMP3-205ENST00000409810 ASXL1Q8IXJ9 1541 aa15.77■□□□□ 0.11
CHMP3-205ENST00000409810 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.77■□□□□ 0.11
CHMP3-205ENST00000409810 SCAF1Q9H7N4 1312 aaKnown RBP15.76■□□□□ 0.11
CHMP3-205ENST00000409810 RBM33Q96EV2 1170 aaKnown RBP15.76■□□□□ 0.11
CHMP3-205ENST00000409810 KIAA1210Q9ULL0 1709 aa15.76■□□□□ 0.11
CHMP3-205ENST00000409810 LRPPRCP42704 1394 aaKnown RBP15.75■□□□□ 0.11
CHMP3-205ENST00000409810 SIN3AQ96ST3 1273 aa15.75■□□□□ 0.11
CHMP3-205ENST00000409810 TECPR2O15040 1411 aa15.75■□□□□ 0.11
CHMP3-205ENST00000409810 DCCP43146 1447 aa15.75■□□□□ 0.11
CHMP3-205ENST00000409810 NALCNQ8IZF0 1738 aa15.74■□□□□ 0.11
CHMP3-205ENST00000409810 PIP4K2BP78356 416 aa15.74■□□□□ 0.11
CHMP3-205ENST00000409810 NEUROD1Q13562 356 aa15.74■□□□□ 0.11
CHMP3-205ENST00000409810 CFAP70Q5T0N1 1121 aa15.74■□□□□ 0.11
CHMP3-205ENST00000409810 C19orf44Q9H6X5 657 aa15.74■□□□□ 0.11
CHMP3-205ENST00000409810 YTHDC2Q9H6S0 1430 aaKnown RBP15.74■□□□□ 0.11
CHMP3-205ENST00000409810 CADPS2Q86UW7 1296 aa15.73■□□□□ 0.11
CHMP3-205ENST00000409810 ADGRL3Q9HAR2 1447 aa15.73■□□□□ 0.11
CHMP3-205ENST00000409810 ABCC11Q96J66 1382 aa15.73■□□□□ 0.11
CHMP3-205ENST00000409810 ROBO2Q9HCK4 1378 aa15.73■□□□□ 0.11
CHMP3-205ENST00000409810 ATF3P18847 181 aa15.72■□□□□ 0.11
CHMP3-205ENST00000409810 TMEM132EQ6IEE7 984 aa15.72■□□□□ 0.11
CHMP3-205ENST00000409810 STK26Q9P289 416 aa15.71■□□□□ 0.11
CHMP3-205ENST00000409810 ADGRB1O14514 1584 aa15.7■□□□□ 0.1
CHMP3-205ENST00000409810 DLC1Q96QB1 1528 aa15.7■□□□□ 0.1
CHMP3-205ENST00000409810 L3MBTL2Q969R5 705 aa15.7■□□□□ 0.1
CHMP3-205ENST00000409810 TONSLQ96HA7 1378 aa15.7■□□□□ 0.1
CHMP3-205ENST00000409810 FAM135BQ49AJ0 1406 aa15.69■□□□□ 0.1
CHMP3-205ENST00000409810 ROBO1Q9Y6N7 1651 aa15.69■□□□□ 0.1
CHMP3-205ENST00000409810 SIRT1Q96EB6 747 aa15.68■□□□□ 0.1
CHMP3-205ENST00000409810 CLSPNQ9HAW4 1339 aa15.68■□□□□ 0.1
CHMP3-205ENST00000409810 SLAIN2Q9P270 581 aa15.67■□□□□ 0.1
CHMP3-205ENST00000409810 CDC42BPGQ6DT37 1551 aa15.66■□□□□ 0.1
CHMP3-205ENST00000409810 ARHGEF28Q8N1W1 1705 aaKnown RBP15.65■□□□□ 0.1
CHMP3-205ENST00000409810 TRPM1Q7Z4N2 1603 aa15.65■□□□□ 0.1
CHMP3-205ENST00000409810 MST1RQ04912 1400 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms