RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 RRBP1Q9P2E9 1410 aaKnown RBP22.45■■□□□ 1.18
CBX3-203ENST00000409747 RIMS2Q9UQ26 1411 aa22.45■■□□□ 1.18
CBX3-203ENST00000409747 KCNA6P17658 529 aa22.45■■□□□ 1.18
CBX3-203ENST00000409747 BCANQ96GW7 911 aa22.45■■□□□ 1.18
CBX3-203ENST00000409747 PLEKHG1Q9ULL1 1385 aa22.45■■□□□ 1.18
CBX3-203ENST00000409747 NWD1Q149M9 1564 aa22.44■■□□□ 1.18
CBX3-203ENST00000409747 PPP1R15AO75807 674 aaPredicted RBP22.44■■□□□ 1.18
CBX3-203ENST00000409747 SLC26A8Q96RN1 970 aa22.44■■□□□ 1.18
CBX3-203ENST00000409747 NKTRP30414 1462 aaKnown RBP22.44■■□□□ 1.18
CBX3-203ENST00000409747 ILDR2Q71H61 639 aa22.43■■□□□ 1.18
CBX3-203ENST00000409747 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.42■■□□□ 1.18
CBX3-203ENST00000409747 TMEM94Q12767 1356 aa22.4■■□□□ 1.18
CBX3-203ENST00000409747 CHGAP10645 457 aaKnown RBP22.4■■□□□ 1.18
CBX3-203ENST00000409747 MED1Q15648 1581 aaPredicted RBP22.39■■□□□ 1.17
CBX3-203ENST00000409747 SPHKAPQ2M3C7 1700 aa22.38■■□□□ 1.17
CBX3-203ENST00000409747 PROSER2Q86WR7 435 aaPredicted RBP22.37■■□□□ 1.17
CBX3-203ENST00000409747 DIP2AQ14689 1571 aa22.37■■□□□ 1.17
CBX3-203ENST00000409747 CHD2O14647 1828 aaKnown RBP22.35■■□□□ 1.17
CBX3-203ENST00000409747 SOCS7O14512 581 aa22.34■■□□□ 1.17
CBX3-203ENST00000409747 TBX22Q9Y458 520 aa22.33■■□□□ 1.17
CBX3-203ENST00000409747 NAIPQ13075 1403 aa22.33■■□□□ 1.16
CBX3-203ENST00000409747 FAM135BQ49AJ0 1406 aa22.32■■□□□ 1.16
CBX3-203ENST00000409747 MSH6P52701 1360 aa22.32■■□□□ 1.16
CBX3-203ENST00000409747 SENP3Q9H4L4 574 aaPredicted RBP22.31■■□□□ 1.16
CBX3-203ENST00000409747 PIK3R4Q99570 1358 aa22.3■■□□□ 1.16
CBX3-203ENST00000409747 ADAMTS13Q76LX8 1427 aa22.29■■□□□ 1.16
CBX3-203ENST00000409747 HFM1A2PYH4 1435 aa22.28■■□□□ 1.16
CBX3-203ENST00000409747 TRPM2O94759 1503 aa22.28■■□□□ 1.16
CBX3-203ENST00000409747 NCOA3Q9Y6Q9 1424 aa22.27■■□□□ 1.16
CBX3-203ENST00000409747 NUTM2DQ5VT03 806 aaPredicted RBP22.27■■□□□ 1.16
CBX3-203ENST00000409747 RBM33Q96EV2 1170 aaKnown RBP22.27■■□□□ 1.16
CBX3-203ENST00000409747 ROBO1Q9Y6N7 1651 aa22.27■■□□□ 1.16
CBX3-203ENST00000409747 PHF23Q9BUL5 403 aaPredicted RBP22.25■■□□□ 1.15
CBX3-203ENST00000409747 CLTCL1P53675 1640 aa22.23■■□□□ 1.15
CBX3-203ENST00000409747 SETBP1Q9Y6X0 1596 aa22.23■■□□□ 1.15
CBX3-203ENST00000409747 ZNF326Q5BKZ1 582 aaKnown RBP22.23■■□□□ 1.15
CBX3-203ENST00000409747 KIF1BO60333 1816 aa22.21■■□□□ 1.15
CBX3-203ENST00000409747 NRXN3Q9Y4C0 1643 aa22.2■■□□□ 1.14
CBX3-203ENST00000409747 C14orf37Q86TY3 774 aa22.2■■□□□ 1.14
CBX3-203ENST00000409747 TRIM52Q96A61 297 aa22.2■■□□□ 1.14
CBX3-203ENST00000409747 SLAIN2Q9P270 581 aa22.2■■□□□ 1.14
CBX3-203ENST00000409747 NEXMIFQ5QGS0 1516 aa22.18■■□□□ 1.14
CBX3-203ENST00000409747 AMOTL2Q9Y2J4 779 aa22.16■■□□□ 1.14
CBX3-203ENST00000409747 XRN1Q8IZH2 1706 aaKnown RBP22.16■■□□□ 1.14
CBX3-203ENST00000409747 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.15■■□□□ 1.14
CBX3-203ENST00000409747 CADPS2Q86UW7 1296 aa22.15■■□□□ 1.14
CBX3-203ENST00000409747 SLC4A1APQ9BWU0 796 aaKnown RBP22.14■■□□□ 1.14
CBX3-203ENST00000409747 C19orf44Q9H6X5 657 aa22.14■■□□□ 1.14
CBX3-203ENST00000409747 PHLPP1O60346 1717 aa22.14■■□□□ 1.14
CBX3-203ENST00000409747 PTPRUQ92729 1446 aa22.14■■□□□ 1.13
CBX3-203ENST00000409747 ATF3P18847 181 aa22.13■■□□□ 1.13
CBX3-203ENST00000409747 DCCP43146 1447 aa22.11■■□□□ 1.13
CBX3-203ENST00000409747 METP08581 1390 aa22.08■■□□□ 1.13
CBX3-203ENST00000409747 VGFO15240 615 aaPredicted RBP22.08■■□□□ 1.12
CBX3-203ENST00000409747 RPGRIP1LQ68CZ1 1315 aa22.07■■□□□ 1.12
CBX3-203ENST00000409747 JCADQ9P266 1359 aa22.07■■□□□ 1.12
CBX3-203ENST00000409747 COL16A1Q07092 1604 aaPredicted RBP22.07■■□□□ 1.12
CBX3-203ENST00000409747 AHDC1Q5TGY3 1603 aaPredicted RBP22.05■■□□□ 1.12
CBX3-203ENST00000409747 ACIN1Q9UKV3 1341 aaKnown RBP22.04■■□□□ 1.12
CBX3-203ENST00000409747 PPLO60437 1756 aa22.03■■□□□ 1.12
CBX3-203ENST00000409747 SETD1AO15047 1707 aaKnown RBP22.02■■□□□ 1.12
CBX3-203ENST00000409747 CCDC144AA2RUR9 1427 aa22.02■■□□□ 1.11
CBX3-203ENST00000409747 ADGRL3Q9HAR2 1447 aa22.02■■□□□ 1.11
CBX3-203ENST00000409747 PTCH1Q13635 1447 aa22.01■■□□□ 1.11
CBX3-203ENST00000409747 NALCNQ8IZF0 1738 aa21.99■■□□□ 1.11
CBX3-203ENST00000409747 RGS17Q9UGC6 210 aaPredicted RBP21.99■■□□□ 1.11
CBX3-203ENST00000409747 MST1RQ04912 1400 aa21.98■■□□□ 1.11
CBX3-203ENST00000409747 PRAG1Q86YV5 1406 aa21.98■■□□□ 1.11
CBX3-203ENST00000409747 ASXL1Q8IXJ9 1541 aa21.98■■□□□ 1.11
CBX3-203ENST00000409747 SPATA31A6Q5VVP1 1343 aa21.98■■□□□ 1.11
CBX3-203ENST00000409747 SHPRHQ149N8 1683 aa21.98■■□□□ 1.11
CBX3-203ENST00000409747 BRINP3Q76B58 766 aa21.97■■□□□ 1.11
CBX3-203ENST00000409747 MPHOSPH9Q99550 1183 aa21.97■■□□□ 1.11
CBX3-203ENST00000409747 FOXD1Q16676 465 aa21.97■■□□□ 1.11
CBX3-203ENST00000409747 NHSL1Q5SYE7 1610 aa21.94■■□□□ 1.1
CBX3-203ENST00000409747 SPATA31E1Q6ZUB1 1445 aa21.93■■□□□ 1.1
CBX3-203ENST00000409747 SETD5Q9C0A6 1442 aa21.93■■□□□ 1.1
CBX3-203ENST00000409747 ANKRD30BQ9BXX2 1392 aa21.92■■□□□ 1.1
CBX3-203ENST00000409747 IFT172Q9UG01 1749 aa21.92■■□□□ 1.1
CBX3-203ENST00000409747 ROBO2Q9HCK4 1378 aa21.91■■□□□ 1.1
CBX3-203ENST00000409747 LRP6O75581 1613 aa21.89■■□□□ 1.1
CBX3-203ENST00000409747 MEX3CQ5U5Q3 659 aaKnown RBP21.89■■□□□ 1.09
CBX3-203ENST00000409747 POTEAQ6S8J7 498 aa21.89■■□□□ 1.09
CBX3-203ENST00000409747 RGL3Q3MIN7 710 aa21.88■■□□□ 1.09
CBX3-203ENST00000409747 C1orf167Q5SNV9 1468 aa21.87■■□□□ 1.09
CBX3-203ENST00000409747 ADGRF5Q8IZF2 1346 aa21.86■■□□□ 1.09
CBX3-203ENST00000409747 LRRC59Q96AG4 307 aaKnown RBP21.86■■□□□ 1.09
CBX3-203ENST00000409747 PIK3C2GO75747 1445 aa21.84■■□□□ 1.09
CBX3-203ENST00000409747 LAMC1P11047 1609 aa21.83■■□□□ 1.09
CBX3-203ENST00000409747 RAB3GAP2Q9H2M9 1393 aa21.83■■□□□ 1.09
CBX3-203ENST00000409747 CDC42BPGQ6DT37 1551 aa21.83■■□□□ 1.08
CBX3-203ENST00000409747 TECPR2O15040 1411 aa21.82■■□□□ 1.08
CBX3-203ENST00000409747 KNDC1Q76NI1 1749 aa21.82■■□□□ 1.08
CBX3-203ENST00000409747 ZNF772Q68DY9 489 aaPredicted RBP21.82■■□□□ 1.08
CBX3-203ENST00000409747 LRPPRCP42704 1394 aaKnown RBP21.81■■□□□ 1.08
CBX3-203ENST00000409747 NUTM2BA6NNL0 878 aaPredicted RBP21.78■■□□□ 1.08
CBX3-203ENST00000409747 NUTM2EB1AL46 878 aaPredicted RBP21.78■■□□□ 1.08
CBX3-203ENST00000409747 NUTM2AQ8IVF1 878 aaPredicted RBP21.78■■□□□ 1.08
CBX3-203ENST00000409747 MYOM2P54296 1465 aa21.78■■□□□ 1.08
CBX3-203ENST00000409747 PNPLA6Q8IY17 1366 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms