RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 CHGAP10645 457 aaKnown RBP29.26■■■□□ 2.27
SMARCB1-204ENST00000407422 RIMS2Q9UQ26 1411 aa29.24■■■□□ 2.27
SMARCB1-204ENST00000407422 XIRP1Q702N8 1843 aaKnown RBP29.24■■■□□ 2.27
SMARCB1-204ENST00000407422 BCANQ96GW7 911 aa29.21■■■□□ 2.27
SMARCB1-204ENST00000407422 SPHKAPQ2M3C7 1700 aa29.19■■■□□ 2.26
SMARCB1-204ENST00000407422 PPP1R15AO75807 674 aaPredicted RBP29.19■■■□□ 2.26
SMARCB1-204ENST00000407422 HSPA1LP34931 641 aa29.19■■■□□ 2.26
SMARCB1-204ENST00000407422 DISP3Q9P2K9 1392 aa29.18■■■□□ 2.26
SMARCB1-204ENST00000407422 PLEKHG1Q9ULL1 1385 aa29.17■■■□□ 2.26
SMARCB1-204ENST00000407422 KCNA6P17658 529 aa29.17■■■□□ 2.26
SMARCB1-204ENST00000407422 NUTM2DQ5VT03 806 aaPredicted RBP29.17■■■□□ 2.26
SMARCB1-204ENST00000407422 HDGFP51858 240 aaKnown RBP29.16■■■□□ 2.26
SMARCB1-204ENST00000407422 HFM1A2PYH4 1435 aa29.16■■■□□ 2.26
SMARCB1-204ENST00000407422 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.12■■■□□ 2.25
SMARCB1-204ENST00000407422 RBM33Q96EV2 1170 aaKnown RBP29.12■■■□□ 2.25
SMARCB1-204ENST00000407422 TMEM94Q12767 1356 aa29.12■■■□□ 2.25
SMARCB1-204ENST00000407422 NWD1Q149M9 1564 aa29.11■■■□□ 2.25
SMARCB1-204ENST00000407422 PROSER2Q86WR7 435 aaPredicted RBP29.09■■■□□ 2.25
SMARCB1-204ENST00000407422 CHD2O14647 1828 aaKnown RBP29.09■■■□□ 2.25
SMARCB1-204ENST00000407422 TRIM52Q96A61 297 aa29.09■■■□□ 2.25
SMARCB1-204ENST00000407422 NKTRP30414 1462 aaKnown RBP29.06■■■□□ 2.24
SMARCB1-204ENST00000407422 CLTCL1P53675 1640 aa29.06■■■□□ 2.24
SMARCB1-204ENST00000407422 ADAMTS13Q76LX8 1427 aa29.06■■■□□ 2.24
SMARCB1-204ENST00000407422 TBX22Q9Y458 520 aa29.05■■■□□ 2.24
SMARCB1-204ENST00000407422 TRPM2O94759 1503 aa29.04■■■□□ 2.24
SMARCB1-204ENST00000407422 ILDR2Q71H61 639 aa29.01■■■□□ 2.23
SMARCB1-204ENST00000407422 ZNF326Q5BKZ1 582 aaKnown RBP29■■■□□ 2.23
SMARCB1-204ENST00000407422 DIP2AQ14689 1571 aa29■■■□□ 2.23
SMARCB1-204ENST00000407422 SLC4A1APQ9BWU0 796 aaKnown RBP28.99■■■□□ 2.23
SMARCB1-204ENST00000407422 KIF1BO60333 1816 aa28.98■■■□□ 2.23
SMARCB1-204ENST00000407422 NRXN3Q9Y4C0 1643 aa28.96■■■□□ 2.23
SMARCB1-204ENST00000407422 NEXMIFQ5QGS0 1516 aa28.93■■■□□ 2.22
SMARCB1-204ENST00000407422 PIK3R4Q99570 1358 aa28.93■■■□□ 2.22
SMARCB1-204ENST00000407422 MSH6P52701 1360 aa28.92■■■□□ 2.22
SMARCB1-204ENST00000407422 SETBP1Q9Y6X0 1596 aa28.92■■■□□ 2.22
SMARCB1-204ENST00000407422 MED1Q15648 1581 aaPredicted RBP28.91■■■□□ 2.22
SMARCB1-204ENST00000407422 FAM135BQ49AJ0 1406 aa28.91■■■□□ 2.22
SMARCB1-204ENST00000407422 PTPRUQ92729 1446 aa28.91■■■□□ 2.22
SMARCB1-204ENST00000407422 FOXD1Q16676 465 aa28.91■■■□□ 2.22
SMARCB1-204ENST00000407422 ROBO1Q9Y6N7 1651 aa28.89■■■□□ 2.22
SMARCB1-204ENST00000407422 AMOTL2Q9Y2J4 779 aa28.88■■■□□ 2.21
SMARCB1-204ENST00000407422 METP08581 1390 aa28.84■■■□□ 2.21
SMARCB1-204ENST00000407422 NCOA3Q9Y6Q9 1424 aa28.84■■■□□ 2.21
SMARCB1-204ENST00000407422 C14orf37Q86TY3 774 aa28.83■■■□□ 2.21
SMARCB1-204ENST00000407422 SLAIN2Q9P270 581 aa28.83■■■□□ 2.21
SMARCB1-204ENST00000407422 XRN1Q8IZH2 1706 aaKnown RBP28.82■■■□□ 2.2
SMARCB1-204ENST00000407422 MPHOSPH9Q99550 1183 aa28.82■■■□□ 2.2
SMARCB1-204ENST00000407422 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.81■■■□□ 2.2
SMARCB1-204ENST00000407422 C19orf44Q9H6X5 657 aa28.78■■■□□ 2.2
SMARCB1-204ENST00000407422 SETD5Q9C0A6 1442 aa28.77■■■□□ 2.2
SMARCB1-204ENST00000407422 PPLO60437 1756 aa28.77■■■□□ 2.2
SMARCB1-204ENST00000407422 VGFO15240 615 aaPredicted RBP28.76■■■□□ 2.19
SMARCB1-204ENST00000407422 RPGRIP1LQ68CZ1 1315 aa28.74■■■□□ 2.19
SMARCB1-204ENST00000407422 CCDC144AA2RUR9 1427 aa28.73■■■□□ 2.19
SMARCB1-204ENST00000407422 SETD1AO15047 1707 aaKnown RBP28.73■■■□□ 2.19
SMARCB1-204ENST00000407422 ATF3P18847 181 aa28.72■■■□□ 2.19
SMARCB1-204ENST00000407422 CADPS2Q86UW7 1296 aa28.72■■■□□ 2.19
SMARCB1-204ENST00000407422 PHLPP1O60346 1717 aa28.71■■■□□ 2.19
SMARCB1-204ENST00000407422 SOCS7O14512 581 aa28.71■■■□□ 2.19
SMARCB1-204ENST00000407422 PHF23Q9BUL5 403 aaPredicted RBP28.69■■■□□ 2.18
SMARCB1-204ENST00000407422 RAB3GAP2Q9H2M9 1393 aa28.68■■■□□ 2.18
SMARCB1-204ENST00000407422 RGL3Q3MIN7 710 aa28.68■■■□□ 2.18
SMARCB1-204ENST00000407422 SPATA31E1Q6ZUB1 1445 aa28.68■■■□□ 2.18
SMARCB1-204ENST00000407422 DCCP43146 1447 aa28.64■■■□□ 2.18
SMARCB1-204ENST00000407422 ACIN1Q9UKV3 1341 aaKnown RBP28.64■■■□□ 2.17
SMARCB1-204ENST00000407422 NALCNQ8IZF0 1738 aa28.63■■■□□ 2.17
SMARCB1-204ENST00000407422 ADGRF5Q8IZF2 1346 aa28.63■■■□□ 2.17
SMARCB1-204ENST00000407422 COL16A1Q07092 1604 aaPredicted RBP28.63■■■□□ 2.17
SMARCB1-204ENST00000407422 IFT172Q9UG01 1749 aa28.63■■■□□ 2.17
SMARCB1-204ENST00000407422 ADGRL3Q9HAR2 1447 aa28.61■■■□□ 2.17
SMARCB1-204ENST00000407422 ROBO2Q9HCK4 1378 aa28.6■■■□□ 2.17
SMARCB1-204ENST00000407422 BRINP3Q76B58 766 aa28.59■■■□□ 2.17
SMARCB1-204ENST00000407422 MST1RQ04912 1400 aa28.59■■■□□ 2.17
SMARCB1-204ENST00000407422 PTCH1Q13635 1447 aa28.59■■■□□ 2.17
SMARCB1-204ENST00000407422 AHDC1Q5TGY3 1603 aaPredicted RBP28.58■■■□□ 2.17
SMARCB1-204ENST00000407422 RGS17Q9UGC6 210 aaPredicted RBP28.57■■■□□ 2.16
SMARCB1-204ENST00000407422 ANKRD30BQ9BXX2 1392 aa28.56■■■□□ 2.16
SMARCB1-204ENST00000407422 JCADQ9P266 1359 aa28.56■■■□□ 2.16
SMARCB1-204ENST00000407422 PRAG1Q86YV5 1406 aa28.54■■■□□ 2.16
SMARCB1-204ENST00000407422 ASXL1Q8IXJ9 1541 aa28.54■■■□□ 2.16
SMARCB1-204ENST00000407422 PIK3C2GO75747 1445 aa28.5■■■□□ 2.15
SMARCB1-204ENST00000407422 NHSL1Q5SYE7 1610 aa28.47■■■□□ 2.15
SMARCB1-204ENST00000407422 TMEM132EQ6IEE7 984 aa28.47■■■□□ 2.15
SMARCB1-204ENST00000407422 STK26Q9P289 416 aa28.47■■■□□ 2.15
SMARCB1-204ENST00000407422 SHPRHQ149N8 1683 aa28.45■■■□□ 2.15
SMARCB1-204ENST00000407422 DDX17Q92841 729 aaKnown RBP28.45■■■□□ 2.14
SMARCB1-204ENST00000407422 C1orf167Q5SNV9 1468 aa28.44■■■□□ 2.14
SMARCB1-204ENST00000407422 LRP6O75581 1613 aa28.43■■■□□ 2.14
SMARCB1-204ENST00000407422 HRCP23327 699 aa28.43■■■□□ 2.14
SMARCB1-204ENST00000407422 LRPPRCP42704 1394 aaKnown RBP28.43■■■□□ 2.14
SMARCB1-204ENST00000407422 TECPR2O15040 1411 aa28.41■■■□□ 2.14
SMARCB1-204ENST00000407422 SPATA31A6Q5VVP1 1343 aa28.41■■■□□ 2.14
SMARCB1-204ENST00000407422 WAPLQ7Z5K2 1190 aa28.41■■■□□ 2.14
SMARCB1-204ENST00000407422 NRXN1Q9ULB1 1477 aa28.41■■■□□ 2.14
SMARCB1-204ENST00000407422 POTEAQ6S8J7 498 aa28.4■■■□□ 2.14
SMARCB1-204ENST00000407422 MYOM2P54296 1465 aa28.4■■■□□ 2.14
SMARCB1-204ENST00000407422 ORAI2Q96SN7 254 aa28.4■■■□□ 2.14
SMARCB1-204ENST00000407422 KNDC1Q76NI1 1749 aa28.39■■■□□ 2.14
SMARCB1-204ENST00000407422 ABCC11Q96J66 1382 aa28.39■■■□□ 2.14
SMARCB1-204ENST00000407422 C14orf93Q9H972 538 aaKnown RBP28.39■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms