RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 MED14O60244 1454 aa29.8■■■□□ 2.36
TPM1-208ENST00000404484 EID1Q9Y6B2 187 aa29.8■■■□□ 2.36
TPM1-208ENST00000404484 POLR1AO95602 1720 aaPredicted RBP29.8■■■□□ 2.36
TPM1-208ENST00000404484 NPHP4O75161 1426 aaPredicted RBP29.79■■■□□ 2.36
TPM1-208ENST00000404484 CHGAP10645 457 aaKnown RBP29.78■■■□□ 2.36
TPM1-208ENST00000404484 ZNF335Q9H4Z2 1342 aaPredicted RBP29.78■■■□□ 2.36
TPM1-208ENST00000404484 SPATA31E1Q6ZUB1 1445 aa29.78■■■□□ 2.36
TPM1-208ENST00000404484 KDM5AP29375 1690 aaKnown RBP29.78■■■□□ 2.36
TPM1-208ENST00000404484 CERKQ8TCT0 537 aa29.77■■■□□ 2.36
TPM1-208ENST00000404484 ADGRB3O60242 1522 aa29.77■■■□□ 2.36
TPM1-208ENST00000404484 SCAF11Q99590 1463 aaKnown RBP29.77■■■□□ 2.36
TPM1-208ENST00000404484 NBPF8Q3BBV2 869 aa29.75■■■□□ 2.35
TPM1-208ENST00000404484 DCAF11Q8TEB1 546 aa29.74■■■□□ 2.35
TPM1-208ENST00000404484 STAC3Q96MF2 364 aa29.73■■■□□ 2.35
TPM1-208ENST00000404484 TMEM131LA2VDJ0 1609 aa29.72■■■□□ 2.35
TPM1-208ENST00000404484 RGL3Q3MIN7 710 aa29.72■■■□□ 2.35
TPM1-208ENST00000404484 KIF1BO60333 1816 aa29.71■■■□□ 2.35
TPM1-208ENST00000404484 LTBP4Q8N2S1 1624 aa29.71■■■□□ 2.35
TPM1-208ENST00000404484 RALGAPBQ86X10 1494 aa29.69■■■□□ 2.34
TPM1-208ENST00000404484 MYO5BQ9ULV0 1848 aa29.68■■■□□ 2.34
TPM1-208ENST00000404484 IQGAP1P46940 1657 aa29.68■■■□□ 2.34
TPM1-208ENST00000404484 ZNF326Q5BKZ1 582 aaKnown RBP29.67■■■□□ 2.34
TPM1-208ENST00000404484 KDM2AQ9Y2K7 1162 aa29.67■■■□□ 2.34
TPM1-208ENST00000404484 DIEXFQ68CQ4 756 aaKnown RBP29.66■■■□□ 2.34
TPM1-208ENST00000404484 ZFYVE9O95405 1425 aa29.66■■■□□ 2.34
TPM1-208ENST00000404484 PRAG1Q86YV5 1406 aa29.66■■■□□ 2.34
TPM1-208ENST00000404484 RIMS2Q9UQ26 1411 aa29.65■■■□□ 2.34
TPM1-208ENST00000404484 HDGFP51858 240 aaKnown RBP29.65■■■□□ 2.34
TPM1-208ENST00000404484 EIF4G2P78344 907 aaKnown RBP eCLIP29.65■■■□□ 2.34
TPM1-208ENST00000404484 ILDR1Q86SU0 546 aaPredicted RBP29.65■■■□□ 2.34
TPM1-208ENST00000404484 NUTM2DQ5VT03 806 aaPredicted RBP29.64■■■□□ 2.33
TPM1-208ENST00000404484 SENP3Q9H4L4 574 aaPredicted RBP29.62■■■□□ 2.33
TPM1-208ENST00000404484 FBXO41Q8TF61 875 aa29.61■■■□□ 2.33
TPM1-208ENST00000404484 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.6■■■□□ 2.33
TPM1-208ENST00000404484 SLC26A8Q96RN1 970 aa29.6■■■□□ 2.33
TPM1-208ENST00000404484 BCANQ96GW7 911 aa29.58■■■□□ 2.33
TPM1-208ENST00000404484 TRPM1Q7Z4N2 1603 aa29.57■■■□□ 2.32
TPM1-208ENST00000404484 HSPA5P11021 654 aaKnown RBP29.56■■■□□ 2.32
TPM1-208ENST00000404484 PLEKHG1Q9ULL1 1385 aa29.55■■■□□ 2.32
TPM1-208ENST00000404484 MYOM2P54296 1465 aa29.55■■■□□ 2.32
TPM1-208ENST00000404484 ROCK2O75116 1388 aaKnown RBP29.52■■■□□ 2.32
TPM1-208ENST00000404484 IFT172Q9UG01 1749 aa29.52■■■□□ 2.32
TPM1-208ENST00000404484 RPGRIP1LQ68CZ1 1315 aa29.52■■■□□ 2.32
TPM1-208ENST00000404484 LAMC1P11047 1609 aa29.5■■■□□ 2.31
TPM1-208ENST00000404484 CARD11Q9BXL7 1154 aa29.5■■■□□ 2.31
TPM1-208ENST00000404484 GPRASP1Q5JY77 1395 aa29.49■■■□□ 2.31
TPM1-208ENST00000404484 USP47Q96K76 1375 aa29.49■■■□□ 2.31
TPM1-208ENST00000404484 CPS1P31327 1500 aa29.49■■■□□ 2.31
TPM1-208ENST00000404484 HIRIP3Q9BW71 556 aaPredicted RBP29.47■■■□□ 2.31
TPM1-208ENST00000404484 TBX22Q9Y458 520 aa29.47■■■□□ 2.31
TPM1-208ENST00000404484 STRCP1A6NGW2 1772 aa29.46■■■□□ 2.31
TPM1-208ENST00000404484 IQSEC2Q5JU85 1478 aa29.46■■■□□ 2.31
TPM1-208ENST00000404484 KCNA6P17658 529 aa29.45■■■□□ 2.31
TPM1-208ENST00000404484 KIAA1210Q9ULL0 1709 aa29.44■■■□□ 2.3
TPM1-208ENST00000404484 ADAMTS13Q76LX8 1427 aa29.44■■■□□ 2.3
TPM1-208ENST00000404484 PPLO60437 1756 aa29.44■■■□□ 2.3
TPM1-208ENST00000404484 NRXN1Q9ULB1 1477 aa29.42■■■□□ 2.3
TPM1-208ENST00000404484 NEXMIFQ5QGS0 1516 aa29.41■■■□□ 2.3
TPM1-208ENST00000404484 LRRC7Q96NW7 1537 aa29.4■■■□□ 2.3
TPM1-208ENST00000404484 VGFO15240 615 aaPredicted RBP29.39■■■□□ 2.29
TPM1-208ENST00000404484 UBAP1LF5GYI3 381 aa29.36■■■□□ 2.29
TPM1-208ENST00000404484 NBPF1Q3BBV0 1214 aa29.35■■■□□ 2.29
TPM1-208ENST00000404484 ADGRF5Q8IZF2 1346 aa29.34■■■□□ 2.29
TPM1-208ENST00000404484 PROSER2Q86WR7 435 aaPredicted RBP29.33■■■□□ 2.29
TPM1-208ENST00000404484 RBM33Q96EV2 1170 aaKnown RBP29.32■■■□□ 2.28
TPM1-208ENST00000404484 PIK3C2GO75747 1445 aa29.31■■■□□ 2.28
TPM1-208ENST00000404484 SETBP1Q9Y6X0 1596 aa29.31■■■□□ 2.28
TPM1-208ENST00000404484 NRXN3Q9Y4C0 1643 aa29.31■■■□□ 2.28
TPM1-208ENST00000404484 DIP2AQ14689 1571 aa29.3■■■□□ 2.28
TPM1-208ENST00000404484 PIK3R4Q99570 1358 aa29.3■■■□□ 2.28
TPM1-208ENST00000404484 DDX10Q13206 875 aaKnown RBP29.29■■■□□ 2.28
TPM1-208ENST00000404484 CHD2O14647 1828 aaKnown RBP29.28■■■□□ 2.28
TPM1-208ENST00000404484 TMEM94Q12767 1356 aa29.28■■■□□ 2.28
TPM1-208ENST00000404484 WASHC2AQ641Q2 1341 aa29.28■■■□□ 2.28
TPM1-208ENST00000404484 AMOTL2Q9Y2J4 779 aa29.28■■■□□ 2.28
TPM1-208ENST00000404484 METP08581 1390 aa29.28■■■□□ 2.28
TPM1-208ENST00000404484 CCDC7Q96M83 1385 aa29.28■■■□□ 2.28
TPM1-208ENST00000404484 NWD1Q149M9 1564 aa29.27■■■□□ 2.28
TPM1-208ENST00000404484 TOM1O60784 492 aa29.27■■■□□ 2.28
TPM1-208ENST00000404484 PTPRUQ92729 1446 aa29.26■■■□□ 2.27
TPM1-208ENST00000404484 ST20-MTHFSA0A0A6YYL1 179 aa29.26■■■□□ 2.27
TPM1-208ENST00000404484 NKTRP30414 1462 aaKnown RBP29.25■■■□□ 2.27
TPM1-208ENST00000404484 EIF3AQ14152 1382 aaKnown RBP29.24■■■□□ 2.27
TPM1-208ENST00000404484 CFAP70Q5T0N1 1121 aa29.22■■■□□ 2.27
TPM1-208ENST00000404484 C14orf93Q9H972 538 aaKnown RBP29.22■■■□□ 2.27
TPM1-208ENST00000404484 XIRP1Q702N8 1843 aaKnown RBP29.22■■■□□ 2.27
TPM1-208ENST00000404484 PIP4K2BP78356 416 aa29.21■■■□□ 2.27
TPM1-208ENST00000404484 KIF7Q2M1P5 1343 aa29.2■■■□□ 2.26
TPM1-208ENST00000404484 C11orf95C9JLR9 678 aaPredicted RBP29.18■■■□□ 2.26
TPM1-208ENST00000404484 ALKQ9UM73 1620 aa29.17■■■□□ 2.26
TPM1-208ENST00000404484 SCAF1Q9H7N4 1312 aaKnown RBP29.16■■■□□ 2.26
TPM1-208ENST00000404484 MIER1Q8N108 512 aa29.14■■■□□ 2.26
TPM1-208ENST00000404484 ADGRB1O14514 1584 aa29.13■■■□□ 2.25
TPM1-208ENST00000404484 SLC24A1O60721 1099 aa29.13■■■□□ 2.25
TPM1-208ENST00000404484 NCOA3Q9Y6Q9 1424 aa29.11■■■□□ 2.25
TPM1-208ENST00000404484 SETD1AO15047 1707 aaKnown RBP29.1■■■□□ 2.25
TPM1-208ENST00000404484 C14orf37Q86TY3 774 aa29.1■■■□□ 2.25
TPM1-208ENST00000404484 XRN1Q8IZH2 1706 aaKnown RBP29.1■■■□□ 2.25
TPM1-208ENST00000404484 MSH6P52701 1360 aa29.1■■■□□ 2.25
TPM1-208ENST00000404484 TESK2Q96S53 571 aa29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms