RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 ZNF142P52746 1687 aaPredicted RBP17.77■□□□□ 0.44
LINC00339-201ENST00000404210 MYO5BQ9ULV0 1848 aa17.77■□□□□ 0.44
LINC00339-201ENST00000404210 POTEDQ86YR6 584 aa17.74■□□□□ 0.43
LINC00339-201ENST00000404210 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.74■□□□□ 0.43
LINC00339-201ENST00000404210 DCAF11Q8TEB1 546 aa17.74■□□□□ 0.43
LINC00339-201ENST00000404210 TMEM2Q9UHN6 1383 aa17.74■□□□□ 0.43
LINC00339-201ENST00000404210 VGFO15240 615 aaPredicted RBP17.73■□□□□ 0.43
LINC00339-201ENST00000404210 ZEB1P37275 1124 aaPredicted RBP17.72■□□□□ 0.43
LINC00339-201ENST00000404210 SLIT1O75093 1534 aa17.72■□□□□ 0.43
LINC00339-201ENST00000404210 RIMS2Q9UQ26 1411 aa17.72■□□□□ 0.43
LINC00339-201ENST00000404210 ARHGAP23Q9P227 1491 aa17.71■□□□□ 0.43
LINC00339-201ENST00000404210 PPP1R15AO75807 674 aaPredicted RBP17.71■□□□□ 0.43
LINC00339-201ENST00000404210 KDM2AQ9Y2K7 1162 aa17.71■□□□□ 0.43
LINC00339-201ENST00000404210 EID1Q9Y6B2 187 aa17.71■□□□□ 0.43
LINC00339-201ENST00000404210 TXNDC2Q86VQ3 553 aa17.7■□□□□ 0.42
LINC00339-201ENST00000404210 NEXMIFQ5QGS0 1516 aa17.7■□□□□ 0.42
LINC00339-201ENST00000404210 PPLO60437 1756 aa17.7■□□□□ 0.42
LINC00339-201ENST00000404210 ZFYVE9O95405 1425 aa17.7■□□□□ 0.42
LINC00339-201ENST00000404210 ANKLE2Q86XL3 938 aa17.69■□□□□ 0.42
LINC00339-201ENST00000404210 IFT172Q9UG01 1749 aa17.69■□□□□ 0.42
LINC00339-201ENST00000404210 LMTK3Q96Q04 1460 aa17.69■□□□□ 0.42
LINC00339-201ENST00000404210 LTKP29376 864 aa17.68■□□□□ 0.42
LINC00339-201ENST00000404210 NUTM2DQ5VT03 806 aaPredicted RBP17.67■□□□□ 0.42
LINC00339-201ENST00000404210 MYOM2P54296 1465 aa17.66■□□□□ 0.42
LINC00339-201ENST00000404210 ADGRF5Q8IZF2 1346 aa17.66■□□□□ 0.42
LINC00339-201ENST00000404210 HSPA2P54652 639 aa17.64■□□□□ 0.41
LINC00339-201ENST00000404210 NRXN1Q9ULB1 1477 aa17.63■□□□□ 0.41
LINC00339-201ENST00000404210 SCAF11Q99590 1463 aaKnown RBP17.63■□□□□ 0.41
LINC00339-201ENST00000404210 NBPF8Q3BBV2 869 aa17.62■□□□□ 0.41
LINC00339-201ENST00000404210 PLEKHG1Q9ULL1 1385 aa17.62■□□□□ 0.41
LINC00339-201ENST00000404210 NCKAP5LQ9HCH0 1330 aa17.61■□□□□ 0.41
LINC00339-201ENST00000404210 PRAG1Q86YV5 1406 aa17.61■□□□□ 0.41
LINC00339-201ENST00000404210 C14orf93Q9H972 538 aaKnown RBP17.6■□□□□ 0.41
LINC00339-201ENST00000404210 MED14O60244 1454 aa17.59■□□□□ 0.41
LINC00339-201ENST00000404210 PIK3C2GO75747 1445 aa17.59■□□□□ 0.41
LINC00339-201ENST00000404210 BCANQ96GW7 911 aa17.59■□□□□ 0.41
LINC00339-201ENST00000404210 ADRA2BP18089 450 aa17.58■□□□□ 0.4
LINC00339-201ENST00000404210 POLR1AO95602 1720 aaPredicted RBP17.58■□□□□ 0.4
LINC00339-201ENST00000404210 CFAP70Q5T0N1 1121 aa17.57■□□□□ 0.4
LINC00339-201ENST00000404210 TBX22Q9Y458 520 aa17.57■□□□□ 0.4
LINC00339-201ENST00000404210 SETBP1Q9Y6X0 1596 aa17.56■□□□□ 0.4
LINC00339-201ENST00000404210 NPHP4O75161 1426 aaPredicted RBP17.55■□□□□ 0.4
LINC00339-201ENST00000404210 STRCQ7RTU9 1775 aa17.55■□□□□ 0.4
LINC00339-201ENST00000404210 KIAA1210Q9ULL0 1709 aa17.55■□□□□ 0.4
LINC00339-201ENST00000404210 DMRT2Q9Y5R5 561 aa17.54■□□□□ 0.4
LINC00339-201ENST00000404210 ADAMTS13Q76LX8 1427 aa17.54■□□□□ 0.4
LINC00339-201ENST00000404210 ALKQ9UM73 1620 aa17.54■□□□□ 0.4
LINC00339-201ENST00000404210 NBPF1Q3BBV0 1214 aa17.53■□□□□ 0.4
LINC00339-201ENST00000404210 NRXN3Q9Y4C0 1643 aa17.53■□□□□ 0.4
LINC00339-201ENST00000404210 TRPM1Q7Z4N2 1603 aa17.52■□□□□ 0.4
LINC00339-201ENST00000404210 SLC26A8Q96RN1 970 aa17.52■□□□□ 0.4
LINC00339-201ENST00000404210 IQGAP1P46940 1657 aa17.52■□□□□ 0.39
LINC00339-201ENST00000404210 LAMC1P11047 1609 aa17.51■□□□□ 0.39
LINC00339-201ENST00000404210 RALGAPBQ86X10 1494 aa17.5■□□□□ 0.39
LINC00339-201ENST00000404210 DIP2AQ14689 1571 aa17.49■□□□□ 0.39
LINC00339-201ENST00000404210 TMEM132EQ6IEE7 984 aa17.49■□□□□ 0.39
LINC00339-201ENST00000404210 ROCK2O75116 1388 aaKnown RBP17.49■□□□□ 0.39
LINC00339-201ENST00000404210 SETD1AO15047 1707 aaKnown RBP17.48■□□□□ 0.39
LINC00339-201ENST00000404210 GPRASP1Q5JY77 1395 aa17.48■□□□□ 0.39
LINC00339-201ENST00000404210 PIK3R4Q99570 1358 aa17.48■□□□□ 0.39
LINC00339-201ENST00000404210 CARD11Q9BXL7 1154 aa17.47■□□□□ 0.39
LINC00339-201ENST00000404210 METP08581 1390 aa17.47■□□□□ 0.39
LINC00339-201ENST00000404210 ADGRB1O14514 1584 aa17.45■□□□□ 0.38
LINC00339-201ENST00000404210 LRPPRCP42704 1394 aaKnown RBP17.43■□□□□ 0.38
LINC00339-201ENST00000404210 ABCC11Q96J66 1382 aa17.43■□□□□ 0.38
LINC00339-201ENST00000404210 KCNA6P17658 529 aa17.43■□□□□ 0.38
LINC00339-201ENST00000404210 SIRT1Q96EB6 747 aa17.43■□□□□ 0.38
LINC00339-201ENST00000404210 AMOTL2Q9Y2J4 779 aa17.43■□□□□ 0.38
LINC00339-201ENST00000404210 YTHDC2Q9H6S0 1430 aaKnown RBP17.43■□□□□ 0.38
LINC00339-201ENST00000404210 CHD2O14647 1828 aaKnown RBP17.42■□□□□ 0.38
LINC00339-201ENST00000404210 ASXL1Q8IXJ9 1541 aa17.42■□□□□ 0.38
LINC00339-201ENST00000404210 PTPRUQ92729 1446 aa17.41■□□□□ 0.38
LINC00339-201ENST00000404210 STK26Q9P289 416 aa17.41■□□□□ 0.38
LINC00339-201ENST00000404210 TRAK1Q9UPV9 953 aa17.41■□□□□ 0.38
LINC00339-201ENST00000404210 EIF4G2P78344 907 aaKnown RBP eCLIP17.39■□□□□ 0.37
LINC00339-201ENST00000404210 TECPR2O15040 1411 aa17.38■□□□□ 0.37
LINC00339-201ENST00000404210 DLC1Q96QB1 1528 aa17.37■□□□□ 0.37
LINC00339-201ENST00000404210 KNDC1Q76NI1 1749 aa17.36■□□□□ 0.37
LINC00339-201ENST00000404210 EIF3AQ14152 1382 aaKnown RBP17.35■□□□□ 0.37
LINC00339-201ENST00000404210 USP47Q96K76 1375 aa17.35■□□□□ 0.37
LINC00339-201ENST00000404210 FAM135BQ49AJ0 1406 aa17.35■□□□□ 0.37
LINC00339-201ENST00000404210 XRN1Q8IZH2 1706 aaKnown RBP17.35■□□□□ 0.37
LINC00339-201ENST00000404210 ST20-MTHFSA0A0A6YYL1 179 aa17.34■□□□□ 0.37
LINC00339-201ENST00000404210 HSPA5P11021 654 aaKnown RBP17.34■□□□□ 0.37
LINC00339-201ENST00000404210 NWD1Q149M9 1564 aa17.34■□□□□ 0.37
LINC00339-201ENST00000404210 POGKQ9P215 609 aa17.34■□□□□ 0.37
LINC00339-201ENST00000404210 SLC24A1O60721 1099 aa17.33■□□□□ 0.36
LINC00339-201ENST00000404210 PRAM1Q96QH2 718 aa17.33■□□□□ 0.36
LINC00339-201ENST00000404210 ARHGEF28Q8N1W1 1705 aaKnown RBP17.33■□□□□ 0.36
LINC00339-201ENST00000404210 CPS1P31327 1500 aa17.32■□□□□ 0.36
LINC00339-201ENST00000404210 PTCH1Q13635 1447 aa17.32■□□□□ 0.36
LINC00339-201ENST00000404210 ROBO2Q9HCK4 1378 aa17.32■□□□□ 0.36
LINC00339-201ENST00000404210 ZNF335Q9H4Z2 1342 aaPredicted RBP17.32■□□□□ 0.36
LINC00339-201ENST00000404210 CENPJQ9HC77 1338 aaPredicted RBP17.32■□□□□ 0.36
LINC00339-201ENST00000404210 WAPLQ7Z5K2 1190 aa17.32■□□□□ 0.36
LINC00339-201ENST00000404210 PROSER2Q86WR7 435 aaPredicted RBP17.32■□□□□ 0.36
LINC00339-201ENST00000404210 STRCP1A6NGW2 1772 aa17.31■□□□□ 0.36
LINC00339-201ENST00000404210 NKTRP30414 1462 aaKnown RBP17.31■□□□□ 0.36
LINC00339-201ENST00000404210 NCOA3Q9Y6Q9 1424 aa17.29■□□□□ 0.36
LINC00339-201ENST00000404210 PLEKHH1Q9ULM0 1364 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms